BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68940.3
Length=3525
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339138 jgi|Araly1|339138|fgenesh1_pg.C_scaffold_2001237 4859 0.0
Ahg926190 jgi|Araly1|926190|scaffold_201751.1 211 3e-53
Ahg315925 jgi|Araly1|315925|fgenesh1_pm.C_scaffold_2000958 119 2e-25
> Ahg339138 jgi|Araly1|339138|fgenesh1_pg.C_scaffold_2001237
Length=3099
Score = 4859 bits (2631), Expect = 0.0
Identities = 2876/2996 (96%), Gaps = 9/2996 (0%)
Strand=Plus/Plus
Query 340 ATGGAGATACAGACAGCAGAGAGCAACGTCATATGTTCAATTGATATTTTTGAATCACTA 399
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGAGATACAGACAGCAGAGAGCAACGTCGTATGTTCAATTGATATTTTTGAATCACTA 60
Query 400 TCCGATAGTGTAGATGTTGCCAAGAAACTGGTTGAGAAATCTCAAGAAAGCAACGAAGCC 459
||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| |||
Sbjct 61 TCCGATAGTGTAGATGTGGCCAAGAATCTGGTTGAGAAATCTCAAGAAAGTAACGGAGCT 120
Query 460 GAATCAACTACTGATCTGAGAAGCATTGAGGCAGGTTTTGAAGGCGTTGTAAAGCAGATG 519
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 121 GAATCAACTACTGATCTGAGAAGCATTGAGGCAGGTTTTGAAGGTGTTGTGAAGCAGATG 180
Query 520 GGTGAAACTTTGCAGTCCATACCTGAATCAACATTCGACGAGGAAGAATATATAGGAGTT 579
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 GGTGAAACTTTGCAGTCCATACCCGAATCAACATTCGACGAGGAAGAATATATAGGAGTG 240
Query 580 GTTATTCAGTCTCTTTCAAATGAGATGCAAAATGCTACCATTGGAGATGGTAGTAAAAGT 639
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 241 GTTATTCAGTCTCTTTCAAATGAGATGCAGAATGCTAACATTGGAGATGGTAGTAAAAGT 300
Query 640 GAGATGATAAACAATGGGCAGCAGAAGATTTCTGCAAAGCATACACCGGATATTGTGTCT 699
||||||||| | |||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 301 GAGATGATACAGAATGGGCAGCAGAAGATTTCTGCAAAGCATTCACCGGAAATTGTGTCA 360
Query 700 GAGCAAATGGAGGAAGACCTCTATCCCACTGATCCTGAATTTTCCTATGAAAGTTACATG 759
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGCAAATGGAGGAAGATCTCTATCCCACTGATCCTGAATTTTCCTATGAAAGTTACATG 420
Query 760 ATGTATAGTGAATCACAATCACAAATGACTGATATACCAGATATCCCAAGCAAGAGCACA 819
||||||||||||||||||| | |||||| || |||||||||||||||||| ||||||||
Sbjct 421 ATGTATAGTGAATCACAAT--C-AATGACCGAAATACCAGATATCCCAAGCCAGAGCACA 477
Query 820 GATGTTAGCCGCCAGAGAAAGCATGGAAATCATAGTGAATCACAATCACTAGTAACCGAA 879
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 478 GATGTTAGCCGCCAGAGAAAGCATGGAAATCATAGTGAATCACAATCACAAGTAACCGAA 537
Query 880 ATACCAGATATCCCAAGCCAGAGCACAAATGTTAGCAGCCAGAGAAAGCATGGGA-ATCT 938
||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||
Sbjct 538 ATACCAGATATCCCAAGCCAGAGCACATATGTTAGCAGCCAGAGAGAGCAT-GGAGATCT 596
Query 939 CAGTAAATCACAATCACAAAGTACCGAAATACCAGATATCCCAAGCCAGAGCTCGAATGC 998
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 597 CAGTAAATCACAATCACAAATTACCGAAATACCAGATATCCCAAGCCAGAGCTCGAATGC 656
Query 999 TAGCAGCCAGAGAAAGTATGGAAATCTTAGTGAATCATTGTCAATGTTACCACAGGTGAC 1058
||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||
Sbjct 657 TAGCAGCCAGAGAAAGTATGGAATTCTTAGCGAATCCTTGTCAATGTTACCACAGGTGAC 716
Query 1059 ACAGTTCATGGAACCTCCATACCAAGCTTTCATCTGCCCGTTGACCAAAGAGATAATGGA 1118
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 717 ACAGTTCATGGAGCCTCCATACCAAGCTTTCATCTGCCCATTGACCAAAGAGATAATGGA 776
Query 1119 AGATCCAGTCACCACAGAAACAGGAGTAACCTGCGAAAGACAAGCAGTAATAGAGTGGTT 1178
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGATCCTGTCACCACAGAAACAGGAGTAACCTGCGAAAGACAAGCAGTAATAGAGTGGTT 836
Query 1179 TGACAGTTTTGGAAACTCCGATGAGATCAACTGTCCAGTTA-CGGGTCAAAAGTTGACCA 1237
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 837 TGACAGTTTTGGAAACTCCGATGAGATCAACTGTCCAGTTACCGGG-CAAAAGTTGACCA 895
Query 1238 CTGAATTAAGTGCAAATGTTGTCTTGAAAACCATCATTCAGGAATGGAAAGTACGTAACG 1297
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 CTGAATTAAGTGAAAATGTTGTCTTGAAAACCATCATTCAGGAATGGAAAGTACGTAACG 955
Query 1298 AGGCAGCAAGAATCAAAGTGGCTCATGCAGCTTTATCCTTAGGCGGTTCAGAAAGTATGG 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 AGGCAGCAAGAATCAAAGTGGCTCATGCAGCTTTATCCTTAGGCGGTTCAGAAAGTATGG 1015
Query 1358 TCATCGACGCGTTAAGAGATCTGCAAATGACCTGTGAAGGGAAAGAGTACAACAAGGTAC 1417
| |||||||| || |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1016 TTATCGACGCATTCAGAGATCTGCAAATGACCTGTGAAGGGAAACAGTACAACAAGGTAC 1075
Query 1418 AAGTCCGTGAAGCTGGGATCATTCAGCTGCTTGATAGATACCTGACGTACAGAAGTAAAG 1477
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1076 GGGTCCGTGAAGCTGGGATCATTCAGCTGCTTGATAGATACCTGACATACAGAAGTAAAG 1135
Query 1478 ATGTGAGGTTTGAACTACTAAAGTTCTTAAGGACACTGGCAGATGAAGAAACTGATGACG 1537
||||||||| ||| || ||| ||| |||||||||||||| |||||||| ||||||||||
Sbjct 1136 ATGTGAGGTATGAGCTGCTACGGTTGTTAAGGACACTGGCGGATGAAGACACTGATGACG 1195
Query 1538 GAAAGGAAATGATTGTGAAGACAATAACTATGTCATGCGTAATCAAACTTTTGGGAAGCA 1597
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1196 GAAAGGAAATGATTACAAAGACAATAACTATGTCATGCATAATCAAACTTTTGGGAAGCA 1255
Query 1598 GTCACCAGCCTGTAAGACATGCAGCACAAGCCTTACTGCTTGAGCTTTCAAAATCCCAAC 1657
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1256 GTCACCAGCCTGTAAGACATGCAGCACAAGCCTTACTGCTTGAGCTTTCGAAATCCCAAC 1315
Query 1658 ATGCATGTGAGAAGATTGGGACTGCTAGAGGGGCGATACTAATGTTAGTTACCGCAAAGT 1717
|||| |||||||||||||||||||||| |||||||||| | |||||||||||||||||||
Sbjct 1316 ATGCGTGTGAGAAGATTGGGACTGCTACAGGGGCGATATTGATGTTAGTTACCGCAAAGT 1375
Query 1718 ATAACAGGGAGTTGGATTCCTTTGCATCTGAAACATCAGACCAAATCTTAAGAAATTTAG 1777
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1376 ATAACAGAGAGTTGGATGCCTTTGCATCTGAAACATCAGACCAAATCTTAAGAAATCTAG 1435
Query 1778 AGAAGTGTCCTGAGAACATCAAGCAAATGGCAGAGAGTGGACTATTGGAACCTCTTCTGG 1837
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1436 AGAAGTGTCCTGAGAATATCAAGCAAATGGCAGAGAGTGGGCTATTGGAACCTCTTCTGG 1495
Query 1838 GCCATCTAGCAGAAGGGAGTGAGGAGACTCAGGTGGCAATGGCTGCGTACCTTGTGGAAA 1897
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1496 GGCATCTAGCAGAAGGGAGTGAAGAGACTCAGGTGGCAATGGCTGCGTACCTTGTGGAAA 1555
Query 1898 TTGATATTGGACATGAGaaaaaaaCTTATGTAGCTGAGAAGGCTTGCCCTGCGCTCATTG 1957
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1556 TTGATATTGGACATGAGAAAAAAACTTACGTAGCTGAGAAGGCTTGCCCTGCGCTCATTG 1615
Query 1958 GGCTGGTGCAAAGTGAAAATATTGACGCTAGAAGAGCCGCCTTCAAAGCTCTTGCTCATA 2017
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1616 GGCTGGTGCAAAGTGAAAATACTGACGCTAGAAGAGCCGCCTTCAAAGCTCTAGCTCATA 1675
Query 2018 TTTCATTGTATCACCCCAACAACAAGATACTGGTAGAGGTCGGCATCATCAAGATCATGG 2077
||||||||||||||||||||||| ||||| ||||||| || |||||||||||||||||||
Sbjct 1676 TTTCATTGTATCACCCCAACAACCAGATATTGGTAGAAGTTGGCATCATCAAGATCATGG 1735
Query 2078 TCGAAGAAATGTTCACGAAGCGAGTGTTTAGTGATCTGATGAACTCCAGGAACGAAGCTG 2137
||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1736 TCGAAGAGATGTTCACCAAGCGAGTTTTTAGTGATCTGATGAACTCCAGGAACGAAGCTG 1795
Query 2138 CTACAATACTTGCAAACATACTGGAATCTGGGCTGGAACATGAGACCTTTGAGGTGAATA 2197
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 CTACAATACTTGCAAATATACTGGAATCTGGGCTGGAACATGAGACCTTTGAGGTGAATA 1855
Query 2198 CTCATGGCCACACATTAGGCTCGGATTACTTTGTATACAACATCATCCACATGCTCAAGA 2257
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1856 CTCATGGCCACACATTAGGCTCGGATTACTTTGTATACAACATCATCCAAATGCTCAAGA 1915
Query 2258 ACTCAAGCCCAGATGATCTTAACATTGATTTGATCAGGATTCTCCTATCCTTGTCCAAAT 2317
||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1916 ACTCAAGCCCAGACGATCTTAACATTAATTTGATCAGGATACTCCTATCCTTGTCCAAAT 1975
Query 2318 CACCTAGAGCGATGGCAACAATCGTCTCAGTGATCAAAGAAACCGACGCAAGCTTTGCCA 2377
|||| || |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1976 CACCCAGGGCGATGGCAACAATTGTCTCAGTGATCAAAGAAACCGACGCAAGCTTCGCCA 2035
Query 2378 TGATAGAACTCATCAACAATCCTCATGACGAATTAGGGGTTGGAGCATTAAAACTTCTAA 2437
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 2036 TGATAGAACTCATCAACAATCCTCATGAAGAATTGGGGGTTGGAGCATTAAAACTTCTGA 2095
Query 2438 TAGCCCTTACCCCCTACATCGGTCACACGCTATCAGAGAGACTATGTAAAACTAGAGGTC 2497
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2096 TAGCACTTACCCCCTACATCGGTCACACGCTATCAGAGAGACTATGTAAAACTAGAGGCC 2155
Query 2498 AGCCAGAGAATCTTATCCAGTGCCCAGTAGAAGCAAATCAAATAACAGAAAAGCATGCTG 2557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2156 AGCCAGAGAATCTTATCCAGTGCCCAGTAGAAGCAAATCAAATAACAGAAAAGCATGCTG 2215
Query 2558 TTTCAGCCAAGTTACTTGCTAAACTTCCTCATCAGAATCTGACTCTTAATTTAGCACTGG 2617
||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 2216 TTTCAGCTAAGTTACTTGCTAAACTGCCTCATCAAAATCTGACTCTTAATTTAGCACTGG 2275
Query 2618 TCAACGAGAGCATAGTGTCTGAAATTCTGCATGCAATCCATCTGATTCAAAGAAGTGGAG 2677
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2276 TCAACGAGAGCATAGTGTCTGAAATTCTGCATGCAATCCATCTGATTCAAAGAAGTGGAA 2335
Query 2678 CACGAACAAGCAGGTATGCAACTGATTT-CTTGGAAGGTCTCGTTGGCATCTTAGTGAGA 2736
||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 2336 CACGAACAAGCAGGTATGCTACTGATTTTCT-GGAAGGTCTCGTTGGCATCTTAGTGAGA 2394
Query 2737 TTCACAACTACACTGTACGAGCCCCAAATGATGTACCTAGCCAGAAACCACGATTTGACA 2796
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2395 TTCACAACTACATTGTACGAGCCCCAAATGATGTACCTAGCCAGAAACCATGATTTGACA 2454
Query 2797 TCAGTGTTTGTTGATTTATTGATGAAAACATCAAGCGACGAAGTTCAAAGGTTATCAGCA 2856
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2455 TCAGTGTTTGTTGATTTATTGATGAAAACATCAAGCGACGAAGTTCAAAGGTTATCAGCG 2514
Query 2857 ACTGGACTAGAAAATCTATCATCTACAACTATGACTTTATCGAGGCCACCCCAACCTAGG 2916
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2515 ACTGGACTAGAAAATCTATCATCTACAACTATGACTTTATCGAGGCCACCTCAACCTAGG 2574
Query 2917 AGCACAAAATTCATGGGATCACTGAGTATGCCTAGGTCTTTCTCCCTCCGTTCATCCAAA 2976
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 2575 AGCACGAAATTCATGGGATCCCTGAGTATGCCTAGGTCTTTTTCCCTCCGTTCATCCAAA 2634
Query 2977 AAGAAGCAGATAGAGATCTGTGCAATCCACAGAGGCGTATGTTCTGCAAAAAACACATTT 3036
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2635 AAGAAGCAAATAGAAATCTGTGCAATCCACAGAGGGGTATGTTCTGCAAAAAACACATTT 2694
Query 3037 TGCTTGGTTGAAGCAAATGCAATCACAAAGCTTCTAGCATGTTTGCAGAGTGATAAAGTG 3096
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 2695 TGCTTGGTTGAAGCAAATGCAATCACGAAGCTACTAGCATGTTTGCAGAGTGATAAAGTA 2754
Query 3097 GAGGTAGTGGAGTCAGCATTAGCTGCTATATGCACGCTATTAGATGACAAGGTCGAAGTG 3156
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2755 GAGGTAGTGGAGTCAGCATTAGCTGCTATATGCACGCTATTAGATGACAAGGTCGATGTG 2814
Query 3157 GAGAAGAGTTTAAGCATGCTGAGTGAAATGAATGCAGTACAACTAATTCTAAATGCAGTC 3216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2815 GAGAAGAGTTTAAGCATGCTGAGTGAAATGAATGCAGTACAACTAATTCTAAATGCAGTC 2874
Query 3217 AAGGAACACAAGAAAGAGTCTCTATTGCAGAAAGCATTTTGGATGATTGACAAGTTCATT 3276
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2875 AAAGAACACAAGAAAGAGTCTCTATTGCAGAAAGCATTTTGGATGATTGACAAGTTCATA 2934
Query 3277 ATTAGAGGCGGAGATAAGTATGCCAGCGAAATATCACAAGATAGGATGTTGTCAGG 3332
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 2935 ATTAGAGGCGGAGATAAGTATGCCAGTGAAATATCACAAGATAGGATGCTGTCAGG 2990
Score = 222 bits (120), Expect = 1e-56
Identities = 167/188 (89%), Gaps = 9/188 (5%)
Strand=Plus/Plus
Query 851 ATAGTGAATCACAATCACTAGTAACCGAAATACCAGATATCCCAAGCCAGAGCACAAATG 910
||||||||||||||||| | | ||||||||||||||||||||||||||||||||| |||
Sbjct 425 ATAGTGAATCACAATCA--A-TGACCGAAATACCAGATATCCCAAGCCAGAGCACAGATG 481
Query 911 TTAGCAGCCAGAGAAAGCATGGGAATC-TCAGTAAATCACAATCACAAAGTA-CCGAAAT 968
||||| |||||||||||||||| |||| | ||| |||||||||||||| ||| |||||||
Sbjct 482 TTAGCCGCCAGAGAAAGCATGGAAATCAT-AGTGAATCACAATCACAA-GTAACCGAAAT 539
Query 969 ACCAGATATCCCAAGCCAGAGCTCGA-ATGCTAGCAGCCAGAGAAAGTATGGAAATCTTA 1027
|||||||||||||||||||||| | | ||| ||||||||||||| || ||||| |||| |
Sbjct 540 ACCAGATATCCCAAGCCAGAGCAC-ATATGTTAGCAGCCAGAGAGAGCATGGAGATCTCA 598
Query 1028 GTGAATCA 1035
|| |||||
Sbjct 599 GTAAATCA 606
Score = 207 bits (112), Expect = 3e-52
Identities = 154/174 (89%), Gaps = 3/174 (2%)
Strand=Plus/Plus
Query 764 ATAGTGAATCACAATCACAAATGACTGATATACCAGATATCCCAAGCAAGAGCACAGATG 823
|||||||||||||||||||| | || || |||||||||||||||||| |||||||| |||
Sbjct 509 ATAGTGAATCACAATCACAAGTAACCGAAATACCAGATATCCCAAGCCAGAGCACATATG 568
Query 824 TTAGCCGCCAGAGAAAGCATGGAAATCAT-AGTGAATCACAATCACTAGTAACCGAAATA 882
||||| |||||||| |||||||| ||| | ||| |||||||||||| | | |||||||||
Sbjct 569 TTAGCAGCCAGAGAGAGCATGGAGATC-TCAGTAAATCACAATCACAAATTACCGAAATA 627
Query 883 CCAGATATCCCAAGCCAGAGCACAAATGTTAGCAGCCAGAGAAAGCATGGGAAT 936
||||||||||||||||||||| | |||| |||||||||||||||| |||| |||
Sbjct 628 CCAGATATCCCAAGCCAGAGCTCGAATGCTAGCAGCCAGAGAAAGTATGG-AAT 680
Score = 108 bits (58), Expect = 4e-22
Identities = 85/97 (88%), Gaps = 5/97 (5%)
Strand=Plus/Plus
Query 940 AGTAAATCACAATCACAAAGTACCGAAATACCAGATATCCCAAGCCAGAGCTC-GAATGC 998
||| ||||||||| ||| | |||||||||||||||||||||||||||||| | || ||
Sbjct 427 AGTGAATCACAAT--CAATG-ACCGAAATACCAGATATCCCAAGCCAGAGCACAGA-TGT 482
Query 999 TAGCAGCCAGAGAAAGTATGGAAATCTTAGTGAATCA 1035
|||| ||||||||||| ||||||||| ||||||||||
Sbjct 483 TAGCCGCCAGAGAAAGCATGGAAATCATAGTGAATCA 519
> Ahg926190 jgi|Araly1|926190|scaffold_201751.1
Length=866
Score = 211 bits (114), Expect = 3e-53
Identities = 132/140 (94%), Gaps = 3/140 (2%)
Strand=Plus/Minus
Query 56 CTTTAGTGGGTTCCAACTTCTCTGAAACAGAGGACCAAGTGTGTCCTTCAAGTCTTCTGC 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 213 CTTTAGTGGGTTCCAACTTCTCTGAAACAGAGGACCAAGTGTGTCCTTCAAGTCTTTTGC 154
Query 116 TTGATGAAGTTA-CAGTTGGAGACTTGGTAAGCAGAGTAAGACAAGACCAGCTTTGAACA 174
| |||||||||| | ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 153 TAGATGAAGTTAACTGTTGGAGACTTGGTAAGCAGAGTGAGACAAGACCATCTTTGAACA 94
Query 175 AATGGGATGTCGAGTCAAGA 194
|||||||||||| || ||||
Sbjct 93 AATGGGATGTCG-GT-AAGA 76
> Ahg315925 jgi|Araly1|315925|fgenesh1_pm.C_scaffold_2000958
Length=654
Score = 119 bits (64), Expect = 2e-25
Identities = 90/103 (87%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 3381 TTGGTGTGCTGAGATTTCCGTGGAGAGAGGCGATGGAGGCGAGATTTGGGGGAAGATTGT 3440
||||| ||| ||| ||||| |||||||| |||| ||| || | ||| ||||||||||||
Sbjct 546 TTGGTCTGCCGAGGTTTCCTTGGAGAGACGCGAGGGATGCAAAATTCGGGGGAAGATTGA 605
Query 3441 GTGGTCCGGTGCTGTCTACAAACTTGATCCTCTCTCACACTCA 3483
||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 606 GTGGTCCAGTGCTATCTACAAACTTGATCCTCTCTCACACTCA 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133125390354
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5