BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G68960.1
Length=1292
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926191 jgi|Araly1|926191|scaffold_201752.1 1602 0.0
> Ahg926191 jgi|Araly1|926191|scaffold_201752.1
Length=1168
Score = 1602 bits (867), Expect = 0.0
Identities = 1078/1178 (92%), Gaps = 21/1178 (2%)
Strand=Plus/Plus
Query 29 AAATTAGGGTTTTAAAACAATGTCTCAGC---TCTTGTGCCGAATCTCGAAGCTTTCAAC 85
|||||||||||||| |||||||||||||| | |||||||||||||| ||||| ||| |
Sbjct 2 AAATTAGGGTTTTACAACAATGTCTCAGCTTTTGTTGTGCCGAATCTCAAAGCTCTCATC 61
Query 86 ATCCCGGAA-CAGGATCCTCTGTTTCCGACGGTCCGAATTCTCTACGGTCACGGCGGAGG 144
| ||||||| || ||||||||||||||||||| |||||||||||| |||||||| ||
Sbjct 62 AGCCCGGAACCA-TTTCCTCTGTTTCCGACGGTCAAAATTCTCTACGGCCACGGCGGCGG 120
Query 145 CAACGACACCTTATCTTCTCCTCGGCAG-CGATCTTGTCGGAAAATCTCCTTGCGATGGG 203
| | |||||||| || ||||||||| | |||| ||||||||| ||||||||||| |||
Sbjct 121 C-A--ACACCTTACCTCCTCCTCGGC-GACGATGTTGTCGGAATATCTCCTTGCGGTGGA 176
Query 204 AAAGTCGTCAACTTTAACCTCTACGACCCAAGGAAG-CAAGAGCAAGTGAAGATCGAAAA 262
||||| |||||||||||||| ||||| || ||| || |||||||||||||||||||||||
Sbjct 177 AAAGTTGTCAACTTTAACCTATACGATCCGAGG-AGACAAGAGCAAGTGAAGATCGAAAA 235
Query 263 CAAGATTCTATCAAAGGAAGTCTACGAATCCCACAAGTTAGGATCCTCACGAGGATGGTT 322
||||||| |||||||||| ||||| |||| | | | ||||||| ||| ||||||||||
Sbjct 236 CAAGATTTTATCAAAGGAGGTCTATAAATCTCGTAGGATAGGATCATCAAGAGGATGGTT 295
Query 323 AGCTTTGTTGAACAAGAAAGATTCAACAGTGCGTCTCACTAACATCTTAAACCCTTCTAA 382
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 296 AGCTTTGGTGAACAAGAAAGATTCAACAGTGCGTCTCACTAACATCTTAAACCCTTCGAA 355
Query 383 GAAAATCATATCTTTACCTTCACTAACCAGAGACAAATATGAATC-CCATGTTAATGTCT 441
||| ||||| ||||||||| || |||||||||||||||||||| | ||||||||||||||
Sbjct 356 GAAGATCATTTCTTTACCTCCAATAACCAGAGACAAATATGAA-CACCATGTTAATGTCT 414
Query 442 CTGTCTCATCTTCAAATGAAGAAGACTGTGTGGTCGCCGTCAAGTTTTACGGGTCACGAG 501
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 415 CTGTCTCATCTTCAAATGAAGAAGACTGTGTTGTCGCCGTCAAGTTTTACGGGTCACGAG 474
Query 502 TTAGTCTTTGTCGACCTGGTGACTCCGAGTGGACTCGCATTGACGTGCCTTGTCCATCTT 561
| |||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 475 TCAGTCTTTGTCGAACTGGTGACTCCGAGTGGACTCGCATCAACGTGCCTTGCCCATCTT 534
Query 562 TCCATTCTTCTACCGTCATTTACTCGGAGAGAGACCGGAGATTTTACTTGAACAATTGTA 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TCCATTCTTCTACCGTCATTTACTCGGAGAGAGACCGGAGATTTTACTTGAACAATTGTA 594
Query 622 ACCCTGACTATACCGGTCCGACCGATTTCACACCGAAATCCGGTTTACACACTCCGGTTA 681
|||||||||| || ||||| || ||||||||||||||| ||||||| | |||||||||||
Sbjct 595 ACCCTGACTACACTGGTCCAACAGATTTCACACCGAAAACCGGTTTTCCCACTCCGGTTA 654
Query 682 GTGGCTACAAGAGATTCCTCTTCTCTAACTTTCTTGAAGAAATGCCAGAGTTGGAGAACG 741
||||||||||||||||||||||||||||||||||||| ||| | ||||||||| ||||||
Sbjct 655 GTGGCTACAAGAGATTCCTCTTCTCTAACTTTCTTGACGAATTACCAGAGTTGAAGAACG 714
Query 742 AAAGGCGTCTCTCTCGTTTCAGGATCCAACAACAACTAGTCGAGTCAGCTTCGGGCCAAT 801
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 AAATGCGTCTCTCTCGTTTCAGGATCCAACAACAACTAGTCGAGTCAGCTTCGGGCCAAT 774
Query 802 CCTTCATCGTTGCATGGTTTGTTGAGAG-TCTTACGGACAAAGGAGAAGTTGCGACATGG 860
|||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||
Sbjct 775 CCTTCATCGTTGCATGGTTTGTGGAGAGAT-TTACGGACAAAGGAGAAGTTGCGACATGG 833
Query 861 GGAGACACACGTTACAATAA-CA-ACAAAGACCTTTGCAAGAAGACCCACAAGATCATGG 918
|||||| ||||||||| ||| || | ||||||||||||| ||||||||||||||||||||
Sbjct 834 GGAGACGCACGTTACA-TAAACAGA-AAAGACCTTTGCAGGAAGACCCACAAGATCATGG 891
Query 919 TGATTAGGCAAGACGAAGAGCAAGGGATTGGTCCTTACACCGATGACATTGGCGATCTCT 978
|| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 892 TGTTTCGGCAAGACGAAGAGCAAGGGATTGGTCCTTATACCGATGACATTGGCGATCTCT 951
Query 979 GCATTTTCTTGGGCGAGAATGAATCTTTCTGTCTCTCTGCTAAGGACTTCCCTGGTCTTA 1038
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 952 GCATTTTCTTGGGCGAGAATGAATCTTTCTGTCTCTCTGCCAAGGACTTCCCTGGTCTTA 1011
Query 1039 ACCCTAACTCAGTCTACTTTGCCGGCCATGGTTCCGGTTATGGCATATGGGATCTCGCCT 1098
|||||||||| ||||||||||| || ||| ||||||||| ||||||||| ||||||||||
Sbjct 1012 ACCCTAACTCTGTCTACTTTGCTGGACATAGTTCCGGTTTTGGCATATGTGATCTCGCCT 1071
Query 1099 CTTGCACCATTCGTTATCTCTCTGACTCTACTCCACCACCCGGTCGCATGTTTTGGCTTC 1158
|| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1072 CTCGCACCATACGTTATCTCTCCGACTCTACTCCACCACCCGGTCGCATGTTTTGGCTTC 1131
Query 1159 CTCCCACAATATCCCAATAGGAGAGAAGATATCTTGTC 1196
|||||||||| | | |||| |||||||| | | |||||
Sbjct 1132 CTCCCACAATGTGCTAATAAGAGAGAAGGTTT-TTGTC 1168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48301735839
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5