BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69010.1
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476029 jgi|Araly1|476029|fgenesh2_kg.2__1159__AT1G69010.1 1895 0.0
Ahg947945 jgi|Araly1|947945|scaffold_704174.1 97.1 3e-19
> Ahg476029 jgi|Araly1|476029|fgenesh2_kg.2__1159__AT1G69010.1
Length=1178
Score = 1895 bits (1026), Expect = 0.0
Identities = 1132/1183 (96%), Gaps = 7/1183 (1%)
Strand=Plus/Plus
Query 114 AAATTCTCCGGCGAAGATGAGAACCGGAAAAGGAAATCAAGAGGAAGAAGATTACGGAGA 173
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAACTCTCCGGCGAAGATGAGAACCGGAAAAGGAAATCAAGAGGAAGAAGATTACGGAGA 60
Query 174 AGAAGACTTTAACTCTAAACGTGAAGGTCCTTCTTCCAACACTACTGTTCATAGCAACAG 233
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAAGACTTTAGCTCGAAACGTGAAGGTCCTTCTTCCAACACTACTGTTCATAGCAACAC 120
Query 234 AGATTCAAAGGAAAATGATAAAGCTAGTGCGATACGTTCTAAACATTCGGTCACTGAGCA 293
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 AGATTCAAAGGAAAATGATAAAGCTAGTGCGATACGTTCGAAACATTCGGTCACTGAGCA 180
Query 294 ACGTAGAAGAAGCAAAATCAATGAAAGATTTCAGATATTGAGAGAACTAATTCCCAACAG 353
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 ACGGAGAAGAAGCAAAATCAATGAAAGATTTCAGATATTGAGAGAACTGATTCCCAACAG 240
Query 354 TGAACA-AAAACGTGACACTGCTTCATTCCTTTTAGAGGTGATAGATTATGTTCAGTATT 412
|||||| |||| | || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 TGAACAGAAAA-GAGATACTGCTTCCTTCCTTTTAGAGGTGATAGATTATGTTCAGTATT 299
Query 413 TACAAGAGAAGGTGCAAAAGTATGAAGGATCGTATCCAGGTTGGAGTCAGGAACCAACAA 472
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 300 TACAAGAGAAGGTGCAAAAGTATGAAGGATCGTATCCAGGATGGAGTCAGGAACCAACAA 359
Query 473 AGTTGACGCCATGGAGGAATAATCATTGGCGAGTTCAAAGTTTGGGGAACCACCCAGTAG 532
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 360 AGTTGACGCCATGGAGGAATAATCATTGGCGAGTTCAAAGTTTGGGGAATCATCCAGTAG 419
Query 533 CTATAAATAATGGATCTGGTCCAGGGATACCTTTTCCTGGAAAGTTTGAAGACAACACTG 592
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 420 CTATAAATAATGGATCTGGTTCAGGGATACCTTTTCCTGGAAAGTTTGAAGAAAACACTG 479
Query 593 TGACTTCGACACCTGCAATTATTGCAGAACCGCAAATCCCGATTGAATCTGACAAAGCAA 652
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 480 TGACTTCGACACCTGCAATTGTTGCAGAACCGCAAATCCCGATTGAATCTGACAAAGGAA 539
Query 653 GAGCTATAACCGGCATATCGATTGAAAGTCAACCTGAGTTAGACGACAAAGGATTACCAC 712
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 540 GAGCTACAACCGGCATATCGATTGAAAGTCAACCTGAGTTAGACAACAAAGGATTACCAC 599
Query 713 CACTACAACCAATTCTTCCAATGGTACAAGGCGAACAAGCTAATGAATGTCCTGCAACTA 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CACTACAACCAATTCTTCCAATGGTACAAGGCGAACAAGCTAATGAATGTCCTGCAACTA 659
Query 773 GTGATGGGCTAGGCCAAAGTAATGACCTGGTTATTGAAGGTGGAACCATTAGCATCTCTA 832
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GTGATGGGCTAGGCCAAATTAATGACCTGGTTATTGAAGGTGGAACCATTAGCATCTCTA 719
Query 833 GTGCCTACTCGCATGAGTTATTGAGCTCATTAACACAAGCACTCCAGAATGCAGGCATTG 892
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || |
Sbjct 720 GTGCCTACTCGCATGAGTTATTGAGCTCATTAACACAAGCTCTCCAGAACGCAGGAATCG 779
Query 893 ATCTGTCGCAAGCAAAGCTTTCTGTGCAGATCGATCTTGGGAAGCGAGCCAATCAAGGTC 952
|||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 780 ATCTGTCGCATGCAAAACTTTCTGTGCAGATTGATCTTGGGAAACGAGCCAATCAAGGAC 839
Query 953 TAACTCATGAAGAGCCATCAAGTAAGAATCCATTATCATATGATACGCAAGGAAGGGATT 1012
|||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||
Sbjct 840 TAACTCATGACGAGCCATCAAGTAAGAATCCATTGTCATCTGATACGCAAGCAAGGGATC 899
Query 1013 CAAGCGTTGAGGAAGAATCTGAACATTCTCACAAGCGGATGAAAACACTGTGACATTTCT 1072
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CAAGCGTCGACGAAGAATCTGAACATTCTCACAAGCGGATGAAAACACTGTGACATTTCT 959
Query 1073 CTCTCAGGCTCCACGGCGCTGGAATATATAAATGTATTGACAGATTCCTTGTATCGTGTA 1132
|||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||
Sbjct 960 CTCTCAGGCTCCACCGCTTTGGAATATATAAATGTATTGACAGATTCCTTCTATCGTGTA 1019
Query 1133 CATTGTTCGGCTTCTAGGGG-TTCCTATAGTACTCGTTAAGATAAACTTTGGTTAGTAGA 1191
|||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||
Sbjct 1020 CATTGTTCGGCTTCTAGGGGCTTCCTATAGT-C--GTTAAGATAAACTTTGGTTAGTAGA 1076
Query 1192 TTCTGCGtttttttGTGGTTCTGAGTTTGTATCATCTTCTGCATCATTCATGTAACCTAT 1251
|||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TTCTACGTTTTTT-GTGGTACTGAGTTTGTATCATCTTCTGCATCATTCATGTAACCTAT 1135
Query 1252 CAAATATGATCTCTTGTGGTTTCAAGTTATTGCATCAtttttt 1294
||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1136 CAAATATAATCTCTTGTGGTTTCAAGTTATTGCATTATTTTTT 1178
> Ahg947945 jgi|Araly1|947945|scaffold_704174.1
Length=928
Score = 97.1 bits (52), Expect = 3e-19
Identities = 172/225 (76%), Gaps = 27/225 (12%)
Strand=Plus/Plus
Query 289 GAGCAACGTAGAAGAAGCAAAATCAATGAAAGATTTCAGA-TATTGA-GAGA-ACTAATT 345
|||||||| ||||||||||||||||||||||||||||||| | || | | || | ||||
Sbjct 144 GAGCAACGAAGAAGAAGCAAAATCAATGAAAGATTTCAGAGT-TTAATG-GATA-TAATA 200
Query 346 CC-CA-A--CAG--TGAACAAAAACGTGACACTGCTTCATTCCTT-TTAGAGGTGATAGA 398
|| || | ||| ||| || ||||| || | ||||| ||| || || ||||| |||||
Sbjct 201 CCTCAGAATCAGAATGATCAGAAACGAGATAAAGCTTCTTTC-TTATTGGAGGTTATAGA 259
Query 399 TTATGTTCAGTATT-TACAAGAGAAGGTGCAAAAGTATGAAGGATC-GTATC-C-AGGT- 453
||| |||| | || ||||||| || || || | |||||||||||| | ||| | | |
Sbjct 260 GTATATTCACT-TTCTACAAGAAAAAGTTCACATGTATGAAGGATCTG-ATCACCAAATG 317
Query 454 TGG-AGTCA-GGAACCAAC-AAAGTTGACGCCATGGAGGAATAAT 495
||| | ||| || ||||| ||| |||| |||||||| ||||||
Sbjct 318 TGGTA-TCAAGGG-CCAACCAAA-TTGATTCCATGGAGAAATAAT 359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48682965009
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5