BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69020.1
Length=2337
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476030 jgi|Araly1|476030|fgenesh2_kg.2__1160__AT1G69020.1 3607 0.0
> Ahg476030 jgi|Araly1|476030|fgenesh2_kg.2__1160__AT1G69020.1
Length=2319
Score = 3607 bits (1953), Expect = 0.0
Identities = 2207/2330 (95%), Gaps = 16/2330 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGTAACATATCTTCTCCGGCGTTACAAGCCGGCGACAATATCATCAGTTTTGTCT 60
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCAGTAACATCTCTTCTCCGGCGTTACAAGCCGGCGACAATATCATCTGTTTTGTCT 60
Query 61 TTCTCGACGAAATGTTTTGTTGGACGAACATCATCACTCTCTGTTCCAACGGAAGCTCCT 120
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 TTCTCGACGCAATGTTTTGTTGGACGAACATCATCACTCTCTGTTCCAGCGGAAGCTCCT 120
Query 121 CCGGTTCCAAAGAAGATCCCATTCGCAATCTCATCTCATGGGATCACAAGACAAGATCCT 180
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 121 CCGGTTCCAAAGAAGATCCCATTAGCAATCTCATCTCATGGGATCACAAGGCAAGATCCT 180
Query 181 TTCCATTGGATGAAGAATACGGACGACACCGATTTCGTCGACTTCCTCAAGCGTGAGAAC 240
| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 TACCGTTGGATGAAGAATACGGACGACTCCGATTTCGTCGACTTCCTCAAGCGTGAGAAC 240
Query 241 TCATACTCTCAAGCTTTCATGGCTGACACAGAAACCCTGAGGCGTGATTTATTCTCCGAG 300
|||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 241 TCATACGCTCAAGCTTTCATGGCAGACACAGAAACCCTGAGGCGTGATTTAGTCTCCGAG 300
Query 301 ATGAAAACTCGTATTCCAGAAGAGATTTTCACTCCTCCTGAGCGTTGGGGACAATGGTTA 360
||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||| |
Sbjct 301 ATGAAAACTCGCATTCCTGAAGAGCTTTTCACTCCTCCTGAGCGTTGGGGACAATGGTCA 360
Query 361 TATAGACAATACATACCCAAAGGAAAAGAGTATCCTCTTCTATGTAGGAGATTGGAGAAG 420
||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 361 TATAGGCAATACATACCCAAAGCAAAAGAGTATCCTCTTCTGTGTAGGAGATTGGAGAAG 420
Query 421 GGTAAAACAAATTGGCTCTCTGGTCTTTTTCGTGGAGAAGAAGAAGAAGTTGTGCTTGAC 480
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 421 GTTAAAACAAATTGGCTCTCTGGTCTTTTTCGTGGAGGAGAAGAAGAAGTTGTGCTTGAC 480
Query 481 TGGAATCAAATTGCAGAGCAGTTTGGTTATGTTCATGTTGGAGTTTGTCGGGTTTCACCT 540
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 TGGAATCAAGTTGCAGAGCAGTTTGGTTATGTTCATGTTGGGGTTTGTCGGGTTTCACCT 540
Query 541 GATCATAACTATCTGGCGTACACGGTTGATCCCGAAGGAGATGGAATCACCTTGTTTTAC 600
|||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 541 GATCATAACTATCTTGCGTATACGGTTGATCCCGAGGGAGATGGAATCACATTGTTTTAC 600
Query 601 ACTGTTACAGATGAAAACCAAAGACCTCACAGGGTTGTTGTCACAAATGTTGAATCAGAT 660
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 601 ACTGTTACAGATGAACACCAAAGACCTCACAGGGTTGTTGTTACAAATGTTGAATCAGAT 660
Query 661 GGGAGAGATGATGCCGTAGTGTTTACCGAAAGAGATTCCAGTTTCTGTGTAGACATAACG 720
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGGAGAGATGATGCTGTAGTGTTTACCGAAAGAGATTCCAGTTTCTGTGTAGACATAACG 720
Query 721 ACCACAAAAGATGGCAAGTTTGTTACTATCAATTCAAACTCAAGGACTTCATCCGAGGTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ACCACAAAAGATGGCAAGTTTGTTACTATCAATTCAAACTCAAGGACTTCATCCGAGGTT 780
Query 781 TATATTGTAAATGCTGATAAGCCAATGGCTGGTTTGCAAAGAACTCGCGAACGAGTTCCT 840
||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||
Sbjct 781 TATATTGTAAATGCTGATAAGCCAATGACTGGTTTGCAAAGAGCTCGTGAGCGAGTTCCT 840
Query 841 GGCGTGCAGTGTTTTCTTGAACATCACAATGGGTTCTTTTACATTCTTACAAATTCTCCC 900
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GGTGTGCAGTGTTTTCTTGAACATCACAATGGGTTCTTTTACATTCTTACAAATTCTCCC 900
Query 901 TCAAATGCAATTAGTGAGTGGTCTGGTGAAGGCTACTATTTGACTAGATGCTTAGTAGAG 960
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 901 TCAAATGCAATTAGTGAGTGGTCTGGTGAAGGCTATTATTTAACTAGATGCTTAGTGGAG 960
Query 961 G-AAATTGAAGCATCTGACTGGCAGACTGTTTTCCGTCCAGATGATGATGTGGTTATACA 1019
| ||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 961 GGAAAA-GAAGCATCTGACTGGCAGACTGTTTTCTGTCCAGATGATGATGTGGTAATACA 1019
Query 1020 AGATATGGACATGTTCAATGACTACTTAGTGCTTTATC-TTAATAAGAAAGGCTTACCTA 1078
||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||
Sbjct 1020 AGATATGGACATGTTCAATGACTACTTAGTGCTTT-TCCTTAATAAGAACGGCTTACCTA 1078
Query 1079 TGCTCTGTTCCATTGATATGCCCATAAAAGCAAATACGAAGCATATGGATGATCTTGTTC 1138
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1079 TGCTCTGTTCCATTGATATGCCCATAAAAGCACATACAAAGCATATGGATGATCTTGTTC 1138
Query 1139 CCTGGTATTTTCCACTTCCAGTTGATTCATGCAGTGTTGCCCCTGGTTCAAACCACGACT 1198
| ||||||||||| |||||| |||||||||||||||||| ||| |||||||||||| |||
Sbjct 1139 CTTGGTATTTTCCTCTTCCATTTGATTCATGCAGTGTTGTCCCGGGTTCAAACCACAACT 1198
Query 1199 TCCAGAGCTCTATATACCGAGTGGTGCTTTCGTCTCCTGTGATTCCTGACACTATCGTTG 1258
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1199 TCCAGAGCTCTATATACCGAGTTGTGCTTTCGTCTCCTGTGATTCCTGACACTATCGTCG 1258
Query 1259 ACTATGACGTGTCAAGAAGATTGTTCTCAATTGTGCAGCAGGAGGGAGGGGTTGTAGATA 1318
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1259 ACTATGATGTGTCAAGAAGATTGTTCTCAATTGTGCAGCAGGAGGGAGGGGTTTTAGATA 1318
Query 1319 ATTCTGATAGTAGTAAGCCATGGTACACAGCAGATCGCTCTACAGAGAATAACGGTCAAC 1378
|||||||||||||||||||||||||| | |||||||||||| |||||||| || | |||
Sbjct 1319 ATTCTGATAGTAGTAAGCCATGGTACTCTTCAGATCGCTCTATAGAGAATAGCGATAAAC 1378
Query 1379 TTAATGATAGAACCAGCGAGGGAGAAGATGGTCAGTTAGATTCTCGAATGCCTAAATGGG 1438
||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1379 TTAATGATAGAACAAGCGAGGGAGAAGATGGTC---------CTCGAATGCCTAAATGGG 1429
Query 1439 AGGACTTATCTGATACATATGTTTGTGAAAGACAAGAAGTTTCTTCACATGACGGAGTTG 1498
|||||||||||||| ||||| ||||||||||| ||||||||||||| || ||||||||||
Sbjct 1430 AGGACTTATCTGATGCATATTTTTGTGAAAGAAAAGAAGTTTCTTCGCACGACGGAGTTG 1489
Query 1499 AAGTCCCTCTTACAATTCTGTATTCACGAGAAGCATGGAAGAAGAGTGAGTCACCGGGAA 1558
||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||
Sbjct 1490 AAGTCCCTCTTACAATTTTGTATTCACGAGAAGCATGGAAGAAGAGTGAATCCCCGGGAA 1549
Query 1559 TGTTGATAGGTTATGGCGCTTATGGAGAAGTTTTGGACAAAAGCTGGTGCACAAATCGAT 1618
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1550 TGTTGATAGGTTATGGCGCTTATGGAGAATTTTTGGACAAAAGCTGGTGCACAAATCGAT 1609
Query 1619 TGAGTATGCTTGATCGTGGTTGGGTGATTGCTTTTGCTGATGTGAGGGGAGGAGGCAGTG 1678
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1610 TGAGTATGCTTGATCGTGGTTGGGTGATTGCCTTTGCTGATGTGAGAGGAGGAGGCAGTG 1669
Query 1679 GGGAGTTTTCATGGCACAAATCCGGAACTAGATCGTTGAAACAAAATTCAATCCAAGATT 1738
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 GGGATTTTTCATGGCACAAATCCGGAACTAGATCGTTGAAACAAAATTCAATCCAAGATT 1729
Query 1739 TCATATACAGTGCTAAATATCTAGTCGAAAAAGGCTATGTGCATAGACATCATCTTGCTG 1798
|| |||||||||| ||||||||| ||||||| |||||||| |||||||||||||||||||
Sbjct 1730 TCGTATACAGTGCGAAATATCTAATCGAAAAGGGCTATGTTCATAGACATCATCTTGCTG 1789
Query 1799 CTGTTGGGTACAGTGCAGGAGCTATTCTTCCAGCTGCAGCTATGAATATGCACCCGAGTC 1858
|| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1790 CTATTGGGTACAGCGCAGGAGCTATTCTTCCAGCTGCAGCCATGAATATGCACCCGAGTC 1849
Query 1859 TATTTCAAGCTGTGATTTTGAAGGTTCCTTTTGTAGATGTATTAAACACATTATCGGATC 1918
|||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1850 TATTTCAAGCTGCGATTTTAAAGGTTCCTTTTGTAGATGTGTTAAACACATTATCGGATC 1909
Query 1919 CAAATTTACCTCTCACACTCCTGGACCATGAAGAATTCGGGAACCCAGACAACCAAACTG 1978
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
Sbjct 1910 CAAATTTACCTCTCACACTCCTGGACCATGAAGAATTCGGTAACCCAGACAACTTAACCG 1969
Query 1979 ACTTCGGATCGATCCTTAGCTATTCTCCATATGATAAGATACGAAAAGATGTTTGCTATC 2038
||||| || | |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1970 ACTTCCGAACCATCCTTAGCTATTCTCCATATGATAACATCCGAAAAGATGTTTGCTATC 2029
Query 2039 CGTCCATGCTTGTCACTACTTCGTTTCATGACTCAAGGGTTGGAGTATGGGAAGGTGCAA 2098
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2030 CGTCCATGCTTGTCACAACTTCGTTTCATGACTCAAGGGTTGGAGTATGGGAAGGCGCAA 2089
Query 2099 AATGGGTGGCTAAGATAAGGGATAGTACGTGCCACGACTGCTCCCGAGCTGTGATTCTGA 2158
||||||||||||||||| |||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 2090 AATGGGTGGCTAAGATACGGGACAGTACGTGCCACGACTGCTCACGAGCAGTGATTCTGA 2149
Query 2159 AAACAAATATGAACGGAGGGCATTTTGGTGAAGGTGGTCGCTATGCTCAATGCGAAGAGA 2218
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 2150 GAACAAATATGAACGGAGGCCATTTTGGTGAAGGTGGTCGCTATGCTCAGTGCGAAGAGA 2209
Query 2219 CTGCCTTTGATTATGCTTTTCTTCTCAAAGTTATGGGTCATCACAACAATAGATAAAAGC 2278
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2210 CTGCCTTTGATTATGCTTTTCTTCTCAAAGTTATGGGTTATCACAACAATAGATAAAAGA 2269
Query 2279 ATCA---CATCATCTTTGGTTTAGCATCAAATGATTTTATAATAGTCTTT 2325
|||| |||||||||||||||||| |||||||||| |||||||||||||
Sbjct 2270 ATCATATCATCATCTTTGGTTTAGCTTCAAATGATTCTATAATAGTCTTT 2319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88026556195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5