BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69030.1
Length=1118
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926196 jgi|Araly1|926196|scaffold_201757.1 1471 0.0
Ahg472789 jgi|Araly1|472789|fgenesh2_kg.1__2743__AT1G26300.1 603 1e-171
> Ahg926196 jgi|Araly1|926196|scaffold_201757.1
Length=1005
Score = 1471 bits (796), Expect = 0.0
Identities = 927/988 (94%), Gaps = 18/988 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGATCTATGGAAGAGAGCGAAATCGTTTGCAGAAGAAGCAGCGAAGAAATCACAA 60
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 23 ATGGAAGATCTGTGGAAGAGAGCGAAATCATTTGCAGAAGAAGCAGCGAAGAAATCACAA 82
Query 61 ACCATAACACTACAATCATCTTCAACAACATTCGTCAATCTCGTCACCGAAACCGCTAAA 120
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 83 ACCATAACACTACAATCATCTTCAACAACCTTCGTCAATCTCGTCTCCGAAACCGCTAAA 142
Query 121 AAATCCAAAGAGTTCGCTCTCGAAGCTTCTAAGAAAGCTGATTCGATCAATGTCTCCGAG 180
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 143 AAATCCAAAGAGTTCGCTCTCGAAGCTTCTAAGAAAGCCGATTCGCTCAATGTCTCCGAA 202
Query 181 TTCGTCGCCGAGACGGCGAAGAAGTCAAAGGAATTCGCTGCTGAGGTTTCAACGAAAGCG 240
|| || ||||||||||||||||| || ||||||||||| || ||||||||||||||||||
Sbjct 203 TTTGTAGCCGAGACGGCGAAGAAATCTAAGGAATTCGCCGCCGAGGTTTCAACGAAAGCG 262
Query 241 GATCAGCTCAAAGTCGTAGCATTGAAACAAGCTGATCAGATCCAGAATATAAAATCGATT 300
|||||||| |||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 263 GATCAGCTTAAAGTCGTTGCGTTGAAACAAGCTGATCAGATCCAGAATATTAAATCGATT 322
Query 301 GCCGACATTATACCTGGAGGATTAGGAGGATCAGGATCTGGTGGTGGTGGTTCTGAGATT 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 323 GCCGACATTATACCTGGAGGATT---AGGATCAGGATCTGGTGGTGGTGGTTCTGTGATC 379
Query 361 TCTGAATCTGAGCTTGTTAGTTTTGGTATTACTGATGATTTGAGAGAGTTTGTTAAAGGT 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 380 TCTGAATCTGAGCTTGTTAGCTTTGGTATTACTGATGATTTGAGAGAGTTTGTTAAAGGT 439
Query 421 TTGACATCTGCTACGTTCCAGGCTTTTCCTGAACAAGATGAATCGTCGGAAGTTTCTGAT 480
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 440 TTGACATCTGCTACGTTTCAGGCTTTTCCTGTACAAGATGAATCGTCGGAAGTTTCTGAT 499
Query 481 TTGGAAACAAGTGCGTCGAATGTTCGGAAGGATCTTTCTGAGTGGCAGGAGAGACATGCC 540
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 TTGGAAACTAGTGCGTCGAATGTTCGGAAGGATCTTTCTGAGTGGCAGGAGAGACATGCC 559
Query 541 ACTCTTGTTCTTGGTTCTGTCAAGCAAATTTCGAAGTTGAGATATGAACTATGCCCACGA 600
||||||||||||||||| || ||||||||||||||||||||||||||| ||||||| |||
Sbjct 560 ACTCTTGTTCTTGGTTCCGTTAAGCAAATTTCGAAGTTGAGATATGAATTATGCCCGCGA 619
Query 601 GTTATGAAAGAAAGGAGGTTCTGGAGGATATACTTTACCTTAGTGAGCACTCATGTTGCA 660
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 GTGATGAAAGAAAGGAGGTTCTGGAGGATATACTTTACCTTAGTGAGCACTCATGTTGCA 679
Query 661 CCATATGAAAGGAAGTACATGGAGGAACTTAGGAACAAAGCAGAGAGTAAAGATGAAGAA 720
|||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 680 CCATATGAGAGAAAGTACATGGAGGAACTTAGGAGCAAAGCAGAGAGTAAAGATGAAGAA 739
Query 721 GCTAAGAAGAGTCCAGGGCTTGGAAGGACAGAATCAGCTGAAAAGAACA-GA-A-T-A-- 774
|||||||||||||||||| ||||| ||||||||| ||||||||||||| || | | |
Sbjct 740 GCTAAGAAGAGTCCAGGGGTTGGAGGGACAGAATTAGCTGAAAAGAACGTGACAATGAAC 799
Query 775 ------TCTACTGCATCGTCTGAGCAAGATCTCGATACATTCCTGCTGGGAGATCTAGAA 828
||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 800 AGAACATCTACTGCATCATCTGAGCAAGATCTCGATACATTCCTTCTGGGAGATCTAGAA 859
Query 829 GACAGTGACGAAGCTCCTGATGATGGTGATGGTGATGATGGA-GGAAGCCTGGGTGATGA 887
||||| |||||||||||||||||||||||||||||||||| | |||||| ||||||||||
Sbjct 860 GACAGCGACGAAGCTCCTGATGATGGTGATGGTGATGATG-ATGGAAGCTTGGGTGATGA 918
Query 888 TGACTTTGACAAGATTGGCAACTCTGATGTTGAGGAAGAGAAAGAATCAAATGCAGCAAA 947
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 919 TGACTTTGACAAGATTGGCAACTCTGATGTTGAAGAAGAGAAAGAAACAAATGCAGCAAA 978
Query 948 AAATTAGAAATATTATTAAGTTTTGTTA 975
|||||||| |||| ||||||||| ||||
Sbjct 979 AAATTAGAGATAT-ATTAAGTTTGGTTA 1005
> Ahg472789 jgi|Araly1|472789|fgenesh2_kg.1__2743__AT1G26300.1
Length=1049
Score = 603 bits (326), Expect = 1e-171
Identities = 768/967 (79%), Gaps = 87/967 (9%)
Strand=Plus/Plus
Query 1 ATGGAAGATCTATGGAAGAGAGCGAAATCGTTTGCAGAAGAAGCAGCG-AAGAAATCACA 59
||||| ||||||||||||||||| |||||||| ||||||||||| | | |||||||| ||
Sbjct 6 ATGGAGGATCTATGGAAGAGAGCCAAATCGTTCGCAGAAGAAGC-GGGTAAGAAATCTCA 64
Query 60 AACCATAACACTACAATCATCTTCAACAACATTCGTCAATCTCGTCACCGAAACCGCTAA 119
||||| ||| |||||||| || | || |||||||||||||||||||| || |||||
Sbjct 65 GACCAT--CAC-CCAATCATCCTCCGCGACGTTCGTCAATCTCGTCACCGAGACTGCTAA 121
Query 120 AAAATCCAAAGAGTTCGCTCTCGAAGCTTCTAAGAAAGCTGATTCGA-TCAATGTCTCCG 178
|||||||| || ||||||||||||||||||||||||| || || | ||||||| ||||
Sbjct 122 GAAATCCAAGGAACTCGCTCTCGAAGCTTCTAAGAAAGCCGA-TCAATTCAATGTTTCCG 180
Query 179 AGTTCGTCGCCGAGACGGCGAAGAAGTC-AAAGGAATTCGCTGCTGAGGTTTCAACGAAA 237
| ||||| ||||| ||||| || || || ||| ||||||||||| || | ||||| |||
Sbjct 181 ATTTCGTTGCCGAAACGGCTAAAAAATCTAAA-GAATTCGCTGCCGAAGCTTCAAAGAAG 239
Query 238 GCGGATCAGCTCAAAGTCGTAGCATTGAAACAAGCTGATCAGATCCAGAATATAAAATCG 297
||||||||| ||||||||| || |||| |||||||||||||||||||| || ||||||
Sbjct 240 GCGGATCAGTTCAAAGTCGCCGCGCTGAAGCAAGCTGATCAGATCCAGAACATCAAATCG 299
Query 298 ATTGCCGACATTATACCTGGAGGATTAGGAGGATCAGGATCTGGTGGTGGTGGTTCTGAG 357
|| || || ||||| | | || | | || |||||||| || || | |
Sbjct 300 ATCGCTGATATTAT--C--G-GG--TCCG-GG-TCAGGATC---------AGGATCCG-G 340
Query 358 ATTTCTGAATCTGAGCTTGTTAG-TTTTGGTATTACTGATGATTTGAGAGAGTTTGTTAA 416
||| ||| | |||||| | | || ||| | || ||||||||||||||||| ||| |
Sbjct 341 --TTCCGAAGCAGAGCTT-CTCGAATTCGGTGTAACGGATGATTTGAGAGAGTTCGTTGA 397
Query 417 AGGTTTGACATCTGCTACGTTCCAGGCTTTTCCTGAACAAGATGAATCGTCGGAAGTTTC 476
||| ||||| |||||||| ||||| |||||||||||||||||| || || |||||| |
Sbjct 398 AGGCTTGACCTCTGCTACATTCCAAGCTTTTCCTGAACAAGATCAACCGGATGAAGTTGC 457
Query 477 TGATTTGGA-AAC-AAGTGCGTCGAATGTTCGGAAGGATCTTTCTGAGTGGCAGGAGAGA 534
|||| | || ||| || | | ||||||||||| |||||||| || || ||||| ||||||
Sbjct 458 TGATGT-GACAACGAA-TTCTTCGAATGTTCGAAAGGATCTATCGGATTGGCAAGAGAGA 515
Query 535 CATGCCACTCTTGTTCTTGGTTCTGTCAAGCAAATTTCGAAGTTGAGATATGAACTATGC 594
||||||||||| ||||| |||||||||||||| || ||||| ||||| ||||| |||
Sbjct 516 CATGCCACTCTGGTTCTAACCTCTGTCAAGCAAATCTCCAAGTTAAGATACGAACTTTGC 575
Query 595 CCACGAGTT-ATGAAAGAAAGGAGGTTCTGGAGGATATACTTT-AC-CTTAGTGAGCACT 651
|| ||| || ||||||||||||||||||||||||||||| ||| || || ||||||||||
Sbjct 576 CCGCGA-TTCATGAAAGAAAGGAGGTTCTGGAGGATATA-TTTCACACT-AGTGAGCACT 632
Query 652 CATGTTGCACCATATGAAAGGAAGTACATGGAGGAACTTAGGAACAAAGCAGAG-A-GTA 709
|||||| |||||||||| |||| ||||||||||| ||||| || ||||||||| | | |
Sbjct 633 CATGTTTCACCATATGAGAGGAGGTACATGGAGGCACTTAAGACCAAAGCAGAACATG-A 691
Query 710 AAGATGAAGAAGCTAAGAAGAGTCC-AGGG-CTTGGA-AGGACAGAATCAGCTG-AAAAG 765
|| ||||||||||||||||| | || || | || ||| || |||||| ||| || |||||
Sbjct 692 AA-ATGAAGAAGCTAAGAAG-GCCCCAGCGACT-GGAGAG-ACAGAAACAG-TGGAAAAG 746
Query 766 AA-----CA----G-A-AT-ATCTACTGC-ATCGTCTGAGCAAGATCTCGATACATTCCT 812
|| || | | | ||||||||| | | |||||||| ||||| |||||||||||
Sbjct 747 AATGTTGCAATCAGTAGAACATCTACTGCGA-CTTCTGAGCAGGATCTGGATACATTCCT 805
Query 813 GCTGGGAGATCTAGAAGACAGTGACG-AAGCTCCTGATGATGGTGATGGTGATGATGGAG 871
|||||||||| ||||||||||| | || |||| | |||| ||||||||| | |
Sbjct 806 TTTGGGAGATCTCGAAGACAGTGATGGAA-CTCC--A-GATG---ATGGTGATG--G-A- 854
Query 872 GAAGCCTGGGTGATGATGACTTTGACAAGATTGGCAACTCTGATGTTGAGGAAGAGAAAG 931
| |||| ||| |||||||||||||||||||| ||||| |||||||| || ||||| |
Sbjct 855 -A-GCCT---TGAGGATGACTTTGACAAGATTGGAAACTCAGATGTTGAAGACGAGAA-G 908
Query 932 -AATCAA 937
||||||
Sbjct 909 CAATCAA 915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41668348281
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5