BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G69050.1 Length=425 Score E Sequences producing significant alignments: (Bits) Value Ahg476034 jgi|Araly1|476034|fgenesh2_kg.2__1164__AT1G69050.1 604 1e-172 > Ahg476034 jgi|Araly1|476034|fgenesh2_kg.2__1164__AT1G69050.1 Length=440 Score = 604 bits (327), Expect = 1e-172 Identities = 408/443 (92%), Gaps = 21/443 (5%) Strand=Plus/Plus Query 1 CACACACAAAACAAGACTTGATACA-T-T-A---T-TATCAAGAAGCAAGAAGCAAGAAT 53 ||||||||||||||||||||||||| | | | | ||||||||| |||||| ||||||| Sbjct 1 CACACACAAAACAAGACTTGATACATTATCAGTTTGTATCAAGAATCAAGAACCAAGAAT 60 Query 54 GGAGGATTCAGGACGTAAAGGAGATCCATTTCCAGGTTTTGAGATGAGAGTTCACAACGA 113 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GGAGGATTCAGGGCGTAAAGGAGATCCATTTCCAGGTTTTGAGATGAGAGTTCACAACGA 120 Query 114 CGATTGCGTTTTCCGACGATCTCTTAGCTGCCGGCTTCAGAGAAGAGCTCCTTGTCCTCT 173 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CGATTGCGTTTTCCGGCGATCTCTTAGCTGCCGGCTTCAGAGAAGAGCTCCTTGTCCTCT 180 Query 174 TCTCTTACCACCAAGACCTCCTCCTTCAGCGGAGGCTCCTTCTACTACGA-CAGGTGTTT 232 ||||||||||||||||||||||||||| |||||||||||||||||||||| || |||| Sbjct 181 TCTCTTACCACCAAGACCTCCTCCTTCTGCGGAGGCTCCTTCTACTACGACCA-ACGTTT 239 Query 233 CTACGTCTACGTTTTGTCAAAACGGCACAGATCCGATCCCTCTCTTGTCTCCTCTCGTCC 292 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 CTGCGTCTACGTTTTGTCAAAACGGCACAGATCCGATCCCTCTCTTGTCTCCTCTCGTCC 299 Query 293 TTCCTTCGATGCTTCAACCTAATCCAACCACCACCTCTCACTAATTCTTCTTT-TGT--C 349 ||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | | | Sbjct 300 TTCCTTCAATGCTTCAACCTAATCCAACCACCACCTCTCACTAATTCTTTTTTCTCTTTC 359 Query 350 --T-----AGATTCCTTCTTCTTTCTTCTGTAATGACTATTTTGAAACTCttttttttAT 402 | || ||||||||||||||||||||||||||||||||| |||| |||||| || Sbjct 360 CATTTTTTAGGTTCCTTCTTCTTTCTTCTGTAATGACTATTTTGGAACT-TTTTTTA-AT 417 Query 403 TGAAATTTTCAACATATTAACGT 425 ||||||||||||||||||||||| Sbjct 418 TGAAATTTTCAACATATTAACGT 440 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15300391189 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5