BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G69050.1

Length=425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg476034 jgi|Araly1|476034|fgenesh2_kg.2__1164__AT1G69050.1         604    1e-172


> Ahg476034 jgi|Araly1|476034|fgenesh2_kg.2__1164__AT1G69050.1
Length=440

 Score =  604 bits (327),  Expect = 1e-172
 Identities = 408/443 (92%), Gaps = 21/443 (5%)
 Strand=Plus/Plus

Query  1    CACACACAAAACAAGACTTGATACA-T-T-A---T-TATCAAGAAGCAAGAAGCAAGAAT  53
            ||||||||||||||||||||||||| | | |   | ||||||||| |||||| |||||||
Sbjct  1    CACACACAAAACAAGACTTGATACATTATCAGTTTGTATCAAGAATCAAGAACCAAGAAT  60

Query  54   GGAGGATTCAGGACGTAAAGGAGATCCATTTCCAGGTTTTGAGATGAGAGTTCACAACGA  113
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GGAGGATTCAGGGCGTAAAGGAGATCCATTTCCAGGTTTTGAGATGAGAGTTCACAACGA  120

Query  114  CGATTGCGTTTTCCGACGATCTCTTAGCTGCCGGCTTCAGAGAAGAGCTCCTTGTCCTCT  173
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CGATTGCGTTTTCCGGCGATCTCTTAGCTGCCGGCTTCAGAGAAGAGCTCCTTGTCCTCT  180

Query  174  TCTCTTACCACCAAGACCTCCTCCTTCAGCGGAGGCTCCTTCTACTACGA-CAGGTGTTT  232
            ||||||||||||||||||||||||||| |||||||||||||||||||||| ||   ||||
Sbjct  181  TCTCTTACCACCAAGACCTCCTCCTTCTGCGGAGGCTCCTTCTACTACGACCA-ACGTTT  239

Query  233  CTACGTCTACGTTTTGTCAAAACGGCACAGATCCGATCCCTCTCTTGTCTCCTCTCGTCC  292
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  CTGCGTCTACGTTTTGTCAAAACGGCACAGATCCGATCCCTCTCTTGTCTCCTCTCGTCC  299

Query  293  TTCCTTCGATGCTTCAACCTAATCCAACCACCACCTCTCACTAATTCTTCTTT-TGT--C  349
            ||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | |  |
Sbjct  300  TTCCTTCAATGCTTCAACCTAATCCAACCACCACCTCTCACTAATTCTTTTTTCTCTTTC  359

Query  350  --T-----AGATTCCTTCTTCTTTCTTCTGTAATGACTATTTTGAAACTCttttttttAT  402
              |     || ||||||||||||||||||||||||||||||||| |||| ||||||  ||
Sbjct  360  CATTTTTTAGGTTCCTTCTTCTTTCTTCTGTAATGACTATTTTGGAACT-TTTTTTA-AT  417

Query  403  TGAAATTTTCAACATATTAACGT  425
            |||||||||||||||||||||||
Sbjct  418  TGAAATTTTCAACATATTAACGT  440



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15300391189


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5