BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G69060.1 Length=2309 Score E Sequences producing significant alignments: (Bits) Value Ahg476035 jgi|Araly1|476035|fgenesh2_kg.2__1165__AT1G69060.1 3208 0.0 Ahg339148 jgi|Araly1|339148|fgenesh1_pg.C_scaffold_2001247 56.5 8e-07 > Ahg476035 jgi|Araly1|476035|fgenesh2_kg.2__1165__AT1G69060.1 Length=2276 Score = 3208 bits (1737), Expect = 0.0 Identities = 2149/2334 (92%), Gaps = 83/2334 (4%) Strand=Plus/Plus Query 1 GACGTTTCCTGAGGTGCAGGGCACGAGTCGCTCAAtctctc--tcttcttcttcttcttT 58 ||||||||||||||||||||||||||||||||||||||||| || |||||||||| || Sbjct 1 GACGTTTCCTGAGGTGCAGGGCACGAGTCGCTCAATCTCTCAATCATCTTCTTCTT-TTC 59 Query 59 TCACGAA-T--TTTCTCCGAAACTTGGTTTTTAT-TCCTCAAACCCATAAATTAGGGTTC 114 || | || | ||| | | || ||||| | ||||||||||| |||||||| ||| Sbjct 60 TCCCAAAGTGATTT-T--G--TGTTCCTTTTT-TCCCCTCAAACCCAAAAATTAGGCTTC 113 Query 115 AGTTTTTAAGCCTCCGTCTTCTTCTTCTTCCGTCGTCGTAGTCGA-A-A-GGTGGTTTTA 171 |||||||||||||||| ||||| |||||||||||||| ||||| | | |||||||||| Sbjct 114 AGTTTTTAAGCCTCCG---TCTTCGTCTTCCGTCGTCGTTGTCGAGAGAGGGTGGTTTTA 170 Query 172 GCTATATGGATATCTTCTACTGCAAATACTCTTCAAAACGGATGCTTTGAAGCCTTGATA 231 |||||||||||| ||| | | | |||| |||||||||||| | ||| Sbjct 171 GCTATATGGATA---TCT--T-C--A-ACTC--CAAAACGGATGC--T------TTG--- 208 Query 232 CTAATTTCATGCGTTCTATATATGTGCATCGTAAGGAAGTAATGGGAGAGAATCGTCAGA 291 |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 209 -----TTCATGCGTTCTATGTATGTGCATCGTAAGGAAGTAATGGGAGAGAATCGTCAGA 263 Query 292 TTAGATCACGTTCTTGGAATAGAATGCCAACTAAAAGATGCAGTGCAAATGGCATAATGG 351 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 264 TTAGATCACGTTCTTGGAATAGAATGCCAACCAAAAGATGCAGTGCAAATGGCATAATGG 323 Query 352 AAGAGTTTATTCTGGTAGATGATGATGATGTTATCATTCTTGATTTTCCTGAGTCATCTA 411 ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 324 AAGAGTTTATTTTGGTAGATGATGATGAGGTTATCATTCTTGATTTTCCTGAGTCATCAA 383 Query 412 AA-CGGAAAGCTCCGGGTACATCCAGAACCAGGAAGGAGTCCATTATGCCGAGAGTGATT 470 || | ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 384 AATC-TAAAGCTCCGGGTACATCCAGAACCAGGAAGGAGTCTATTTTGCCGAGAGTGATT 442 Query 471 AGCATTGACGATGATGATGATGAGACAGAAAATGTTCAGAAAGCTGGGAGTAGTTCAAGC 530 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 443 AGCATTGACGATGATGATGATGAGACAGAAAATATTCAGAAAGCTGGGAGTAGTTCAAGC 502 Query 531 GGTAACTTGCAAACATCTGCAGAAGTGGATAATGACGATTGCCAATTCATTCAGGAGAAG 590 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 503 GGTAACTTGCAAACATCTGCAGAAGTGGATAATGACGATTGCCAATTCATTCAAGAAAAG 562 Query 591 TGTGCTACTTTTAGATTTTCAAAATGCAAACAGACTTTCTCTACAATGCCCT-CTCATGG 649 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 563 TGTGCTACTTTTAGATTTTCAAAATGCAAACAGACTTTCTCTACAATGCCCTCCTC-TGG 621 Query 650 TATTCGATTTGGTTTAGGCTCTGATACTTATAGTGACTTTTCCGAGAGTGACTGTTCTGA 709 ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 622 AATTCGATTTGGTTTAGGCTCTGATACTGACAGTGACTTTTCCGAGAGTGACTGTTCTGA 681 Query 710 TTGTGAGATTTTAGAAGGGTCTCATAGAGATGTCCGCGAGCAGTGGGAACAAGCAGCTCT 769 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 682 TTGTGAGATTTTAGAAGGGTCTCATAGAGAGGTCCGCGAGCAGTGGGAACAAGCAGCTCT 741 Query 770 CTTGAGAAAAATGAAGAAAGCAGGTAAAGCTGGTTTGAGTGAGGAGGCTGGTCCTTCGAA 829 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 742 CTTGAGAAAAATGAAGAAAGCAGGTAAAGCTGGTCTGAGTGAGGAGGCTGGTCCTTCAAA 801 Query 830 TCTCCACTGTGACACTAATTTCGA-GCCTGGTTTTGAAAGGAGAACTGAACAACATGATC 888 ||||||| ||||||||| |||| | ||||||||||| | |||||||||||| |||||| Sbjct 802 TCTCCACAGTGACACTAGTTTC-AGGCCTGGTTTTG---GAAGAACTGAACAAAATGATC 857 Query 889 AAACGTCTTTCTTCTTTGCTGCAAGAAATCCAGATGGTGGAAAAGCTGGTCTGACTGAGG 948 |||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 858 AAACATCTTTCTTCTTTGCTGCAAGAACTCCAGATGGTGGAAAAGCTGGTCTGAGTGAGG 917 Query 949 AAGCTGGTCCTTCAAATCTCCACTGTGACAATAATTTCAGACCTGGTTTTGAAAGTAGAA 1008 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 918 AAGCTGGTCCTTCAAATCTCCACTGTGACAATAATTTCAGATCTGGTTTTGAAAGTAGAA 977 Query 1009 CTGAACAACATGATCAAACATCTTTCTTCTTTACTGCAAGTAATCCAGATGGTGAAAAAG 1068 |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 978 CTGAACAACATGATCAAACATCTTTCTTCTTTGCTGCAAGTAATCCAGATGGGGAAAAAG 1037 Query 1069 AAACCTCTTCTACTTTCTTTGGAGCCGATGGTAGAATCCCTGATATGACGACTTATTTTG 1128 ||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| |||| Sbjct 1038 AAACCTCTTCTACTTTCTTTGGAACCGATGGTAGAATTCCTGATATGGCGACTTACTTTG 1097 Query 1129 GCTCGGTAATGGAGGAAGACAACCAAGCTAAACACACTGCTAATTCTACTTTTTCCAGTA 1188 ||||||||||||||||||||| || |||||||||| |||||||||||| ||||| | || Sbjct 1098 GCTCGGTAATGGAGGAAGACAGCCGAGCTAAACACTCTGCTAATTCTAGTTTTTTTAATA 1157 Query 1189 AAGAGGATTTTCGGGGGCCTTCCCCACTGTCACCCGGAATACGAGTTGAACATGAAAGGT 1248 |||||||||||||||||||||| ||||||||||||| ||||| || |||||||||||||| Sbjct 1158 AAGAGGATTTTCGGGGGCCTTCTCCACTGTCACCCGAAATACAAGCTGAACATGAAAGGT 1217 Query 1249 TTGATACACCACCAACTCATTTTACTTCGCCAAAAGAACCGATACATCAAACTAGTTTTA 1308 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1218 TTGATACACCATCATCTCATTTTACTTCGCCAAAAGAACCGATACATCAAACTAGTTTCA 1277 Query 1309 AGAAAGTTGTAGAACAGCCAAACAAAGTGCAAGTTCAATGTGAAACTTCACTGTCACCCG 1368 | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1278 AAAAAGTTGTAGAACAGCCAAACAAAGTGCAAGTTCAATGTGAAACTTCACAGTCACCCG 1337 Query 1369 AAGAGAATCAAAATAAAAACGTC-GCGTATCAGTCTTATACCAAGGAAGTTGAAGAA-GA 1426 ||||||| |||| ||||| | | |||||||||||||||||||||||||||||| || || Sbjct 1338 AAGAGAACCAAACGAAAAATG-CTGCGTATCAGTCTTATACCAAGGAAGTTGAA-AATGA 1395 Query 1427 AGAAGACGCATCAAAATTGTCTCCGCCACAGACTTCTAATGGATATGGAGATACAACGCA 1486 ||||||||| |||||||| ||||||||| |||||||| |||| ||||||||| |||||| Sbjct 1396 AGAAGACGCCTCAAAATTTTCTCCGCCAGAGACTTCTGATGGGGATGGAGATAAAACGCA 1455 Query 1487 TGTGTTTGGCACCCAAAGTAATGGAGCCAGGTGTGAGCACGGCA--T-AAGTTTAGATGA 1543 |||| ||||||||||||||||||||||||||||||||||||| | | ||||||||||| Sbjct 1456 TGTGCTTGGCACCCAAAGTAATGGAGCCAGGTGTGAGCACGGGATCTCGAGTTTAGATGA 1515 Query 1544 ATCAAGAGAACCGATCATTGATCCTATTCCATCTACCAGTGGACAAGTGCAAGGTACTAA 1603 |||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||| ||| Sbjct 1516 ATCAAGAGAACCGATCATTGATCCGATTCCATCTACAAGTGGACAAATGCAAGGTAGTAA 1575 Query 1604 TGGTACAGCTCCTGCAATTGATGTCATGCTTAACAGAGAGATATTGAAGGAGACTGATGA 1663 | |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 1576 TTGTACAGCTCCTGCAATCGATGTCATGCTTAACAGAGAGATGTTGAAGGAGACTGATGA 1635 Query 1664 ATACAAGAGAGCACAAGAAGAAGAATGGGAGTCCAGGCAACGACAGTTACAGATCCAGGC 1723 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1636 ATACAAGAAAGCACAAGAAGAAGAATGGGAGTCCAGGCAACGACAGTTACAGATCCAGGC 1695 Query 1724 AGACGAAGCTCAGAAGCAACGTAAGAGAAGAAAGTTAGAGAACATGCGAAAGTTGGagat 1783 |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct 1696 AGACGAAGCTCAGAAGCAACGTAAGAGAAGAAAGTTAGAGAACACGCGACAGTTGGAGAT 1755 Query 1784 ggaaagaaggcaaaaagagagggtagaggaagtgagagagacacagaagaaggatgaaga 1843 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1756 GGAAAGAAGGCAAAAAGAGAGGGTAGAGGAAGTGAGAGAGACACAGAAGAAGGATGAAGA 1815 Query 1844 aaaCATGAACATGAAGGAGAAAGTTCGTGCAGAAATAACCAAATCGCTTAAACTGCTGGA 1903 || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1816 AAGCATGAACATGAAGGAGAAAGTCCGTGCAGAAATAACCAAATCGCTTAAACTGCTGGA 1875 Query 1904 ACTCAAGAGTTTTAACATGGCAGCGTTGCTTCGAGGCTTAGGGATTCAAGTTGGTGGTGG 1963 ||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||| Sbjct 1876 ACTCAAGAGCTTTAACATGGCATCGTTGCTTCGAGGCTTAGGGATTCAAGTTGTTGGTGG 1935 Query 1964 AATATCTCCTCTGCCAAATGAGGTACACGCGGCATACAAACGAGCAGTATTGAAATTTCA 2023 |||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| Sbjct 1936 AATATCTCCTCTGCCACATGAGGTACACGCAGCATACAAACGAGCCGTATTGAAATTTCA 1995 Query 2024 TCCGGACAGAGCATCAAGAGGTGGTGACATCAAACAGCAAGTTGAAGCAGAAGAAAAATT 2083 ||| || |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1996 TCCTGATAGAGCATCAAGAGGTG---ACATCAAACAGCAAGTTGAAGCAGAAGAAAAATT 2052 Query 2084 CAAGCTTATTGCTCGCATGAAGGACAAATTTAAGCTTATTGCTCCCTAACATTGACC--- 2140 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2053 CAAGCTTATTGCTCGCATGAAGGACAAATTTAAGCTTATTGCTCACTAACATTGACCAAA 2112 Query 2141 --CGTATTATCAAAATCtttttttttttttttGAATTTCTTAGAAT--ATGTAAATAGtt 2196 ||| |||| | ||||||||||| ||||||||||||| |||||||||||| Sbjct 2113 GACGTTTTATGATAATCTTTTTTT--------GAATTTCTTAGAAGGGATGTAAATAGTT 2164 Query 2197 tttttGATTATCCAACAGGAA-ACAAAATTGTGTTGGTAGGTTTTAAAGAAGGGAAAAAT 2255 |||| |||||||||||| || |||||||||||||||||||||||||| ||||||||||| Sbjct 2165 TTTT-GATTATCCAACAA-AATACAAAATTGTGTTGGTAGGTTTTAAACAAGGGAAAAAT 2222 Query 2256 AGAAGAAACACAGTGGTAATGGTATCAACGTCTTCTCTTCTTGCCTTTGCCTTT 2309 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2223 AGAACAAACACAGTGGTAATGGTATCAACGTCTTCTCTTCTTGCCTTTGCCTTT 2276 > Ahg339148 jgi|Araly1|339148|fgenesh1_pg.C_scaffold_2001247 Length=2706 Score = 56.5 bits (30), Expect = 8e-07 Identities = 30/30 (100%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 2280 TCAACGTCTTCTCTTCTTGCCTTTGCCTTT 2309 |||||||||||||||||||||||||||||| Sbjct 2706 TCAACGTCTTCTCTTCTTGCCTTTGCCTTT 2677 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86960029335 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5