BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69060.1
Length=2309
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476035 jgi|Araly1|476035|fgenesh2_kg.2__1165__AT1G69060.1 3208 0.0
Ahg339148 jgi|Araly1|339148|fgenesh1_pg.C_scaffold_2001247 56.5 8e-07
> Ahg476035 jgi|Araly1|476035|fgenesh2_kg.2__1165__AT1G69060.1
Length=2276
Score = 3208 bits (1737), Expect = 0.0
Identities = 2149/2334 (92%), Gaps = 83/2334 (4%)
Strand=Plus/Plus
Query 1 GACGTTTCCTGAGGTGCAGGGCACGAGTCGCTCAAtctctc--tcttcttcttcttcttT 58
||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||
Sbjct 1 GACGTTTCCTGAGGTGCAGGGCACGAGTCGCTCAATCTCTCAATCATCTTCTTCTT-TTC 59
Query 59 TCACGAA-T--TTTCTCCGAAACTTGGTTTTTAT-TCCTCAAACCCATAAATTAGGGTTC 114
|| | || | ||| | | || ||||| | ||||||||||| |||||||| |||
Sbjct 60 TCCCAAAGTGATTT-T--G--TGTTCCTTTTT-TCCCCTCAAACCCAAAAATTAGGCTTC 113
Query 115 AGTTTTTAAGCCTCCGTCTTCTTCTTCTTCCGTCGTCGTAGTCGA-A-A-GGTGGTTTTA 171
|||||||||||||||| ||||| |||||||||||||| ||||| | | ||||||||||
Sbjct 114 AGTTTTTAAGCCTCCG---TCTTCGTCTTCCGTCGTCGTTGTCGAGAGAGGGTGGTTTTA 170
Query 172 GCTATATGGATATCTTCTACTGCAAATACTCTTCAAAACGGATGCTTTGAAGCCTTGATA 231
|||||||||||| ||| | | | |||| |||||||||||| | |||
Sbjct 171 GCTATATGGATA---TCT--T-C--A-ACTC--CAAAACGGATGC--T------TTG--- 208
Query 232 CTAATTTCATGCGTTCTATATATGTGCATCGTAAGGAAGTAATGGGAGAGAATCGTCAGA 291
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 209 -----TTCATGCGTTCTATGTATGTGCATCGTAAGGAAGTAATGGGAGAGAATCGTCAGA 263
Query 292 TTAGATCACGTTCTTGGAATAGAATGCCAACTAAAAGATGCAGTGCAAATGGCATAATGG 351
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 264 TTAGATCACGTTCTTGGAATAGAATGCCAACCAAAAGATGCAGTGCAAATGGCATAATGG 323
Query 352 AAGAGTTTATTCTGGTAGATGATGATGATGTTATCATTCTTGATTTTCCTGAGTCATCTA 411
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 324 AAGAGTTTATTTTGGTAGATGATGATGAGGTTATCATTCTTGATTTTCCTGAGTCATCAA 383
Query 412 AA-CGGAAAGCTCCGGGTACATCCAGAACCAGGAAGGAGTCCATTATGCCGAGAGTGATT 470
|| | ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 384 AATC-TAAAGCTCCGGGTACATCCAGAACCAGGAAGGAGTCTATTTTGCCGAGAGTGATT 442
Query 471 AGCATTGACGATGATGATGATGAGACAGAAAATGTTCAGAAAGCTGGGAGTAGTTCAAGC 530
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 443 AGCATTGACGATGATGATGATGAGACAGAAAATATTCAGAAAGCTGGGAGTAGTTCAAGC 502
Query 531 GGTAACTTGCAAACATCTGCAGAAGTGGATAATGACGATTGCCAATTCATTCAGGAGAAG 590
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 503 GGTAACTTGCAAACATCTGCAGAAGTGGATAATGACGATTGCCAATTCATTCAAGAAAAG 562
Query 591 TGTGCTACTTTTAGATTTTCAAAATGCAAACAGACTTTCTCTACAATGCCCT-CTCATGG 649
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 563 TGTGCTACTTTTAGATTTTCAAAATGCAAACAGACTTTCTCTACAATGCCCTCCTC-TGG 621
Query 650 TATTCGATTTGGTTTAGGCTCTGATACTTATAGTGACTTTTCCGAGAGTGACTGTTCTGA 709
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 622 AATTCGATTTGGTTTAGGCTCTGATACTGACAGTGACTTTTCCGAGAGTGACTGTTCTGA 681
Query 710 TTGTGAGATTTTAGAAGGGTCTCATAGAGATGTCCGCGAGCAGTGGGAACAAGCAGCTCT 769
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 682 TTGTGAGATTTTAGAAGGGTCTCATAGAGAGGTCCGCGAGCAGTGGGAACAAGCAGCTCT 741
Query 770 CTTGAGAAAAATGAAGAAAGCAGGTAAAGCTGGTTTGAGTGAGGAGGCTGGTCCTTCGAA 829
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 742 CTTGAGAAAAATGAAGAAAGCAGGTAAAGCTGGTCTGAGTGAGGAGGCTGGTCCTTCAAA 801
Query 830 TCTCCACTGTGACACTAATTTCGA-GCCTGGTTTTGAAAGGAGAACTGAACAACATGATC 888
||||||| ||||||||| |||| | ||||||||||| | |||||||||||| ||||||
Sbjct 802 TCTCCACAGTGACACTAGTTTC-AGGCCTGGTTTTG---GAAGAACTGAACAAAATGATC 857
Query 889 AAACGTCTTTCTTCTTTGCTGCAAGAAATCCAGATGGTGGAAAAGCTGGTCTGACTGAGG 948
|||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 858 AAACATCTTTCTTCTTTGCTGCAAGAACTCCAGATGGTGGAAAAGCTGGTCTGAGTGAGG 917
Query 949 AAGCTGGTCCTTCAAATCTCCACTGTGACAATAATTTCAGACCTGGTTTTGAAAGTAGAA 1008
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 918 AAGCTGGTCCTTCAAATCTCCACTGTGACAATAATTTCAGATCTGGTTTTGAAAGTAGAA 977
Query 1009 CTGAACAACATGATCAAACATCTTTCTTCTTTACTGCAAGTAATCCAGATGGTGAAAAAG 1068
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 978 CTGAACAACATGATCAAACATCTTTCTTCTTTGCTGCAAGTAATCCAGATGGGGAAAAAG 1037
Query 1069 AAACCTCTTCTACTTTCTTTGGAGCCGATGGTAGAATCCCTGATATGACGACTTATTTTG 1128
||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||
Sbjct 1038 AAACCTCTTCTACTTTCTTTGGAACCGATGGTAGAATTCCTGATATGGCGACTTACTTTG 1097
Query 1129 GCTCGGTAATGGAGGAAGACAACCAAGCTAAACACACTGCTAATTCTACTTTTTCCAGTA 1188
||||||||||||||||||||| || |||||||||| |||||||||||| ||||| | ||
Sbjct 1098 GCTCGGTAATGGAGGAAGACAGCCGAGCTAAACACTCTGCTAATTCTAGTTTTTTTAATA 1157
Query 1189 AAGAGGATTTTCGGGGGCCTTCCCCACTGTCACCCGGAATACGAGTTGAACATGAAAGGT 1248
|||||||||||||||||||||| ||||||||||||| ||||| || ||||||||||||||
Sbjct 1158 AAGAGGATTTTCGGGGGCCTTCTCCACTGTCACCCGAAATACAAGCTGAACATGAAAGGT 1217
Query 1249 TTGATACACCACCAACTCATTTTACTTCGCCAAAAGAACCGATACATCAAACTAGTTTTA 1308
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1218 TTGATACACCATCATCTCATTTTACTTCGCCAAAAGAACCGATACATCAAACTAGTTTCA 1277
Query 1309 AGAAAGTTGTAGAACAGCCAAACAAAGTGCAAGTTCAATGTGAAACTTCACTGTCACCCG 1368
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1278 AAAAAGTTGTAGAACAGCCAAACAAAGTGCAAGTTCAATGTGAAACTTCACAGTCACCCG 1337
Query 1369 AAGAGAATCAAAATAAAAACGTC-GCGTATCAGTCTTATACCAAGGAAGTTGAAGAA-GA 1426
||||||| |||| ||||| | | |||||||||||||||||||||||||||||| || ||
Sbjct 1338 AAGAGAACCAAACGAAAAATG-CTGCGTATCAGTCTTATACCAAGGAAGTTGAA-AATGA 1395
Query 1427 AGAAGACGCATCAAAATTGTCTCCGCCACAGACTTCTAATGGATATGGAGATACAACGCA 1486
||||||||| |||||||| ||||||||| |||||||| |||| ||||||||| ||||||
Sbjct 1396 AGAAGACGCCTCAAAATTTTCTCCGCCAGAGACTTCTGATGGGGATGGAGATAAAACGCA 1455
Query 1487 TGTGTTTGGCACCCAAAGTAATGGAGCCAGGTGTGAGCACGGCA--T-AAGTTTAGATGA 1543
|||| ||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct 1456 TGTGCTTGGCACCCAAAGTAATGGAGCCAGGTGTGAGCACGGGATCTCGAGTTTAGATGA 1515
Query 1544 ATCAAGAGAACCGATCATTGATCCTATTCCATCTACCAGTGGACAAGTGCAAGGTACTAA 1603
|||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||| |||
Sbjct 1516 ATCAAGAGAACCGATCATTGATCCGATTCCATCTACAAGTGGACAAATGCAAGGTAGTAA 1575
Query 1604 TGGTACAGCTCCTGCAATTGATGTCATGCTTAACAGAGAGATATTGAAGGAGACTGATGA 1663
| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1576 TTGTACAGCTCCTGCAATCGATGTCATGCTTAACAGAGAGATGTTGAAGGAGACTGATGA 1635
Query 1664 ATACAAGAGAGCACAAGAAGAAGAATGGGAGTCCAGGCAACGACAGTTACAGATCCAGGC 1723
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1636 ATACAAGAAAGCACAAGAAGAAGAATGGGAGTCCAGGCAACGACAGTTACAGATCCAGGC 1695
Query 1724 AGACGAAGCTCAGAAGCAACGTAAGAGAAGAAAGTTAGAGAACATGCGAAAGTTGGagat 1783
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1696 AGACGAAGCTCAGAAGCAACGTAAGAGAAGAAAGTTAGAGAACACGCGACAGTTGGAGAT 1755
Query 1784 ggaaagaaggcaaaaagagagggtagaggaagtgagagagacacagaagaaggatgaaga 1843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1756 GGAAAGAAGGCAAAAAGAGAGGGTAGAGGAAGTGAGAGAGACACAGAAGAAGGATGAAGA 1815
Query 1844 aaaCATGAACATGAAGGAGAAAGTTCGTGCAGAAATAACCAAATCGCTTAAACTGCTGGA 1903
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1816 AAGCATGAACATGAAGGAGAAAGTCCGTGCAGAAATAACCAAATCGCTTAAACTGCTGGA 1875
Query 1904 ACTCAAGAGTTTTAACATGGCAGCGTTGCTTCGAGGCTTAGGGATTCAAGTTGGTGGTGG 1963
||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1876 ACTCAAGAGCTTTAACATGGCATCGTTGCTTCGAGGCTTAGGGATTCAAGTTGTTGGTGG 1935
Query 1964 AATATCTCCTCTGCCAAATGAGGTACACGCGGCATACAAACGAGCAGTATTGAAATTTCA 2023
|||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1936 AATATCTCCTCTGCCACATGAGGTACACGCAGCATACAAACGAGCCGTATTGAAATTTCA 1995
Query 2024 TCCGGACAGAGCATCAAGAGGTGGTGACATCAAACAGCAAGTTGAAGCAGAAGAAAAATT 2083
||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1996 TCCTGATAGAGCATCAAGAGGTG---ACATCAAACAGCAAGTTGAAGCAGAAGAAAAATT 2052
Query 2084 CAAGCTTATTGCTCGCATGAAGGACAAATTTAAGCTTATTGCTCCCTAACATTGACC--- 2140
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2053 CAAGCTTATTGCTCGCATGAAGGACAAATTTAAGCTTATTGCTCACTAACATTGACCAAA 2112
Query 2141 --CGTATTATCAAAATCtttttttttttttttGAATTTCTTAGAAT--ATGTAAATAGtt 2196
||| |||| | ||||||||||| ||||||||||||| ||||||||||||
Sbjct 2113 GACGTTTTATGATAATCTTTTTTT--------GAATTTCTTAGAAGGGATGTAAATAGTT 2164
Query 2197 tttttGATTATCCAACAGGAA-ACAAAATTGTGTTGGTAGGTTTTAAAGAAGGGAAAAAT 2255
|||| |||||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 2165 TTTT-GATTATCCAACAA-AATACAAAATTGTGTTGGTAGGTTTTAAACAAGGGAAAAAT 2222
Query 2256 AGAAGAAACACAGTGGTAATGGTATCAACGTCTTCTCTTCTTGCCTTTGCCTTT 2309
|||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2223 AGAACAAACACAGTGGTAATGGTATCAACGTCTTCTCTTCTTGCCTTTGCCTTT 2276
> Ahg339148 jgi|Araly1|339148|fgenesh1_pg.C_scaffold_2001247
Length=2706
Score = 56.5 bits (30), Expect = 8e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Minus
Query 2280 TCAACGTCTTCTCTTCTTGCCTTTGCCTTT 2309
||||||||||||||||||||||||||||||
Sbjct 2706 TCAACGTCTTCTCTTCTTGCCTTTGCCTTT 2677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86960029335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5