BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69070.1
Length=2815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339148 jgi|Araly1|339148|fgenesh1_pg.C_scaffold_2001247 4156 0.0
Ahg476035 jgi|Araly1|476035|fgenesh2_kg.2__1165__AT1G69060.1 207 3e-52
> Ahg339148 jgi|Araly1|339148|fgenesh1_pg.C_scaffold_2001247
Length=2706
Score = 4156 bits (2250), Expect = 0.0
Identities = 2579/2731 (94%), Gaps = 50/2731 (2%)
Strand=Plus/Plus
Query 1 ATGGGGAAAGATAACAAAATGAAGAAGAAGCCTAACAAAAAAGGCGAAAGAAGAATGGGT 60
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAAAGATAACAAAACGAAGAAGAAGCCTAACAAAAAAGGCGAAAGAAGAATGGGA 60
Query 61 CCAGATGCAGTGGCCATGAAAGCTAAAACGCAGAAGGTCGATAATCCATTTGAATCAATC 120
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 CCAGATGCAGTCGCCATGAAAGCTAAAACCCAGAAGGTCGATAATCCATTTGAATCAATC 120
Query 121 CGATCTCGCCGGAAGTTCGATATCCTCGGAAAAAAGCGTAAAGGTGAAGAACGATTCGTC 180
|| |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 121 CGCTCTCGCCGAAAGTTCGATATCCTCGGAAAGAAGCGTAAAGGTGAAGAACGGTTCGTC 180
Query 181 AGTGTTTCTCGAACTCGTGCTGTTGATAAGAGGAAGAACACGCTGGAGAAAGAGTATGAG 240
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 AGTGTCTCTCGAACTCGTGCTGTTGATAAGAGGAAGAACACGCTGCAGAAAGAGTATGAG 240
Query 241 CAGAGTTTAAAATCTTCGGTGTTCCTT-GATAAGCGTATTGGAGAACA-GAACGATGAGC 298
|| || |||||| ||||||| || || |||||||||||||||||||| | | |||||||
Sbjct 241 CAAAGCTTAAAAGCTTCGGT-TTTTTTGGATAAGCGTATTGGAGAACATG-ATGATGAGC 298
Query 299 TTGGTGAATTCGATAAGGGTATAATTAGATCGCAGAGACAGCGTCAGTTGAAACTAGCGA 358
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 299 TTGGTGAGTTCGATAAGGGTATAATTCGATCGCAGAGACAGCGTCAGTTGAAACTAGCGA 358
Query 359 AGAAGAGTATGTATAATTTGTCTGATGGTGAAGAAGATGTTTATGAAGATGGTGCTCTTG 418
|||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 359 AGAAGAGTATGTATAATTTGTCTGATGGGGAAGAGGATGTATATGAAGATGGTGCTCTTG 418
Query 419 GTGGTTCTTCTGTAAAGGATGATTTTGATTCTGGACTTTTGTCTGATGAAGATCTTCAAG 478
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GTGGTTCTTCTGTAAGGGATGATTTTGATTCTGGACTTTTGTCTGATGAAGATCTTCAAG 478
Query 479 ATGATGATTTAGAAGCTTCTGCATCAAAGAGACTGAAGCATCTAAACAGAAACAGAGAGG 538
|||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| |||
Sbjct 479 ATGATGATCAAGAAGCTTCTGCATTAAAGAGATTGAAGCATCTAAACAGAAACAGACAGG 538
Query 539 TTGATGCATCTGGAGAGGAAGAGAGGCGTAAGAGTAAGAAGGAAGTCATGGAAGAGATCA 598
|||| |||||||||||||||||||| | |||||| ||||||||| |||||||||||||||
Sbjct 539 TTGACGCATCTGGAGAGGAAGAGAGACATAAGAGCAAGAAGGAAATCATGGAAGAGATCA 598
Query 599 TCATGAAGAGCAAACTTGGTAGGATGGAGAAAGCTAAGCAAAAGGAGGAAAAGGGAAAGC 658
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCATGAAGAGCAAACTTGGCAGGATGGAGAAAGCTAAGCAAAAGGAGGAAAAGGGAAAGC 658
Query 659 TAATGGATGAGCTTGATAAAAACTTCAAGTCCTTAGTGAATTCTGAGGCGATGGAGAGTT 718
||||||||||||| ||| |||| |||||||| |||||||||||| |||||||||||||||
Sbjct 659 TAATGGATGAGCTGGATGAAAATTTCAAGTCTTTAGTGAATTCTCAGGCGATGGAGAGTT 718
Query 719 TAACTAAGCCTTTTGTA-GCCGAAGAGAATACACGCGATCCTTATCTACTAAGT-CTGAA 776
||||||||||||||| | | ||||||| |||||||| |||||||| || ||| | |||||
Sbjct 719 TAACTAAGCCTTTTG-ATGTCGAAGAGGATACACGCAATCCTTATGTATTAA-TGCTGAA 776
Query 777 TGATATGTCAATGGAAATCCGTGCTCGTCCTTCTGAGAGGACAAAGACACCTGAAGAAAT 836
||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGATATGGCAATGGATATTCGTGCTCGTCCTTCTGAGAGGACAAAGACACCTGAAGAAAT 836
Query 837 TGCCCAGAAAGAGCGAGAAAAGTTAGAGGCTCTTGAGGAAGAGCGTAAGAAAAGGATGCA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TGCCCAGAAAGAGCGAGAAAAGTTAGAGGCTCTTGAGGAAGAGCGTAAGAAAAGGATGCA 896
Query 897 GGAAACTGAGGAGTTAAGTGATGGGGATGAGGAAATTGGCGGTGAGGAGTCTACAAAGAG 956
|||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 897 GGAAACTGAGGAGTTAAGCGATGGGGATGAGGAAATTGGCGGTGAGGAATCAACAAAGAG 956
Query 957 GCTAACTGTCATTTCTGGTGACGATCTTGGTGATTCCTTCTCAGTTGAAGAAGATAAGCC 1016
|| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 957 GCCAAGGGTCATTTCTGGTGATGATCTTGGTGATTCCTTCTCAGTTGAAGAAGATAAGCC 1016
Query 1017 GAAAAGGGGATGGATTGATGATGTTCTTGAAAGAGAGGATAATGTTGATAATTCAGAAAG 1076
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1017 GAAAAGGGGATGGATTGATGATGTTCTTGAAAGAGAGGATGATGTTGATAATTCAGAAAG 1076
Query 1077 TGACGAG---GAT-G--------AGGATTCagaaagtgaagaagaagaagatgatgatgg 1124
||| ||| ||| | |||||||||||||||||||||||||||||||||| |
Sbjct 1077 TGATGAGAATGATAGCTCTTCTGAGGATTCAGAAAGTGAAGAAGAAGAAGATGATGA-G- 1134
Query 1125 tgagtcagatggaggtgatgagaagcagagaaAAGGTCATCATTTAGAAGACTGGGAACA 1184
| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1135 T----CAGATGGGGGTGATGAGAAGCAGAGAAAACGTCATCATTTAGAAGACTGGGAACA 1190
Query 1185 AAGtgatgatgagctaggggctgagctggaagatgaggaagaggatgatgatgaagaaga 1244
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1191 AAGTGATGATGAGCTAGGGGATGAGCTGGAAGATGAGGAGGAGGATGATGATGAAGAAGA 1250
Query 1245 tgatgatgaagaggatgCTGAGCTAAGGGTACATAAAAAGTTGAAGAATGACTATGCTGC 1304
|||||| | | | ||| ||||||||||||||||||||||||||||||||
Sbjct 1251 TGATGA-G---------C----C-AAGAGTACATAAAAAGTTGAAGAATGACTATGCTGC 1295
Query 1305 TCCATATAAAGGAGAAGGGTTGTCGGGAACAGTGAAAGAAAAAACCAATATGAAGAAAAT 1364
|||| |||||||||||| |||||| |||||||||||| |||||| ||||||||||||| |
Sbjct 1296 TCCAAATAAAGGAGAAGTGTTGTCTGGAACAGTGAAACAAAAAAACAATATGAAGAAATT 1355
Query 1365 GAGTTCAACGCAGCGTGATATTCCCTTCATGATTGATCCTCCAAAGAATTTCGAGGAATT 1424
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1356 GAGTTCAACGCAGCGTGACATTCCGTTCATGATTGATCCTCCAAAGAATTTCGAGGAATT 1415
Query 1425 ACTTGCCCTAGTGGAAGATTGTTCAAATGAAGATGTTATTCTAATTGTCAACCGAATCCG 1484
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1416 GCTTGCCCTAGTGGAAGATTGTTCAAATGAAGATGTTATTTTAATTGTCAACCGAATCCG 1475
Query 1485 GATAGCACACTCAATTAAGATTAAAGCTGAAAACCGAAAAAAGATGCAGGTCTTCTATGG 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 GATAGCACACTCAATTAAGATTAAAGCTGAAAACCGAAAAAAGATGCAGGTCTTCTATGG 1535
Query 1545 TGTTCTCTTGCAGTATTTTGCCGTTCTTGCAAGCAAAAAGCCCTTGAACTTTGATTTACT 1604
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1536 TGTTCTCTTGCAGTATTTTGCCGTTCTTACAAGCAAAAAGCCCTTGAACTTTGATTTACT 1595
Query 1605 AAATATGCTTGTCAAACCTTTGATTGAGATGAGCATGGAGATCCCCTACTTTGCTGCAAT 1664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1596 AAATATGCTTGTCAAACCTTTGATTGAGATGAGCATGGAGATCCCCTACTTTGCTGCAAT 1655
Query 1665 ATGTGCTCGCCAGCGGCTTTTAAAGACCCGTTCACAATTTTGCGAGGCTATCAAGAATCC 1724
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1656 ATGTGCTCGCCAGCGGCTTTTAAAGACCCGTGCACAATTTTGCGAGGCTATCAAGAATCC 1715
Query 1725 AGAGGATGGATGCTGGCCTTCCTTGAAAACATTATTTCTCTTGCGGCTCTGGTCCCTGAT 1784
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1716 AGAGGATGGATGCTGGCCTTCCTTGAAAACATTGTTTCTCTTGCGGCTCTGGTCCATGAT 1775
Query 1785 TTTTCCATGCTCTGACTTTCGCCATGCTGTGATGACCCCATCGATTTTGTTGATGTGTGA 1844
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1776 TTTTCCATGCTCTGACTTTCGCCATGCTGTGATGACCCCATCGATATTGTTGATGTGTGA 1835
Query 1845 ATATCTCATGCGCTGTCCCATCTCTTCTGGTCGTGATATTGCCATAGGTTCCTTTTTATG 1904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1836 ATATCTCATGCGCTGTCCCATCTCTTCTGGTCGTGATATTGCCATAGGTTCCTTTTTATG 1895
Query 1905 CTCCATTGTTCTCTTG----C-AA----TCTAAAAAGTTCTGTCCTGAAGCCATATTATT 1955
|||||||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct 1896 CTCCATTGTTCTCTTGGTTGCCAAGCAATCTAAAAAGTTCTGTCCTGAAGCCATATTATT 1955
Query 1956 TATTCGGACTCTCCTGATGGCTGCTTCAGACAAAAAGTCACCAGCATCTGCGGAATCTGA 2015
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1956 TATTCGGACCCTCCTGATGGCTGCTTCAGACAAAAAGTCACCATCATCTGCGGAATCTGA 2015
Query 2016 GTTTTATCATTTTATGGAATTAAAATCGTTGACTCCATTGCTGTGCATACAAGACAACGT 2075
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2016 GTTTTATCATTTCATGGAATTAAAATCGTTGACTCCATTGCTGTGCATACAAGACAACGT 2075
Query 2076 AAAGGAGGTCATGCCTTTAAACTTCCTAAAGATAATGAATGAGCCAGCAGACTCTCCATA 2135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2076 AAAGGAGGTCATGCCTTTAAACTTCCTAAAGATAATGAATGAGCCAGCAGACTCTCCATA 2135
Query 2136 TTTCAGCTCTGATGATTTCAGAGCAAGCATCCTTTCAAGTGTAGTCGAGACTCTTGAAGG 2195
||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||
Sbjct 2136 TTTCAGCTCTGATGATTTCAGAGCAAGCATCCTTTCAAGTGTAGTTGATACTCTTGGAGG 2195
Query 2196 GTTTGTGGAGATAAATGGAGGATTGAGTTCCTTTCCAGAGATCTTCATGCCCATCTCAAC 2255
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2196 GTTTGTGGAGATAAACGGAGGATTGAGTTCCTTTCCAGAGATCTTCATGCCCATCTCAAC 2255
Query 2256 TTTATTGCACCAAATTGGAAACCAAGAAAAGATCCCACAAACTCTCAAGGAGAAATTAGA 2315
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2256 TTTATTGCACCAAATTGGGAACCAAGAAAAGATCCCACAAACTCTCAAGGAGAAATTAGA 2315
Query 2316 AGATGTTGCAAAGCTAATCGAAAAGAAAACCGACGACCATCACAAGGAACGCAAACCACT 2375
|||||| |||||||||||||||| ||||||||| || |||||||||||||||||||||||
Sbjct 2316 AGATGTCGCAAAGCTAATCGAAACGAAAACCGATGAGCATCACAAGGAACGCAAACCACT 2375
Query 2376 CTCTATGCGTAAGCATAAGCCAGTAGCCATCAGAATGGTCAATCCCAAATTTGAAGAGAA 2435
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 2376 CTCTATGCGTAAGCATAAGCCAGTAGCCATCAAAATGGTCAATCCCAAATTTGAGGAGAA 2435
Query 2436 CTTTGTTCCAGGCATGGATAACGATCCAGACAAATACCGTTCTGACCTCAAAAAATTGAA 2495
||||| |||||||| |||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 2436 CTTTGCTCCAGGCAGGGATTACGATCCAGACAAATACCGTTCTGACCTCAAAAAGTTGAA 2495
Query 2496 GAGAAAGTTAAAACGGGAAGCCAGAGGAGCAGTTCGTGAGCTGCGCAAAGACAGCTACTT 2555
|||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 2496 GAGAAAGTTAAAACAGGAAGCCAAAGGAGCAGTGCGTGAGCTGCGCAAAGACAGCTACTT 2555
Query 2556 CATGAGCACTGTTAAAGCAAAAGAGAAGGCTGCGCATGAGCAAGAGAGAGCAGAGAAACA 2615
||||||| | |||||||| |||||||| |||| |||||||||||||||||||||||||||
Sbjct 2556 CATGAGCTCGGTTAAAGCGAAAGAGAAAGCTGTGCATGAGCAAGAGAGAGCAGAGAAACA 2615
Query 2616 TGGCAAAGCTTGGGCTTTCCTTCAAGAACAAGAACATGCTTTCAAATCTGGACAACTTGG 2675
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2616 TGGCAAAGCTTGGGCTTTTCTTCAAGAACAAGAACATGCTTTCAAATCTGGACAACTTGG 2675
Query 2676 TAAAGGCAAAGGCAAGAAGAGAAGACGTTGA 2706
|||||||||||||||||||||||||||||||
Sbjct 2676 TAAAGGCAAAGGCAAGAAGAGAAGACGTTGA 2706
> Ahg476035 jgi|Araly1|476035|fgenesh2_kg.2__1165__AT1G69060.1
Length=2276
Score = 207 bits (112), Expect = 3e-52
Identities = 133/142 (94%), Gaps = 5/142 (4%)
Strand=Plus/Minus
Query 2677 AAAGGCAAAGGCAAGAAGAGAAGACGTTGATACCATTACCACTGTGTTTCTTCTATTTTT 2736
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2276 AAAGGCAAAGGCAAGAAGAGAAGACGTTGATACCATTACCACTGTGTTTGTTCTATTTTT 2217
Query 2737 CCCTTCTTTAAAACCTACCAACACAATTTTGT-TTCCTGTTGGATAATCaaaaaaaCTAT 2795
||||| |||||||||||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 2216 CCCTTGTTTAAAACCTACCAACACAATTTTGTATTT-TGTTGGATAATCAAAAAA-CTAT 2159
Query 2796 TTACATA--TTCTAAGAAATTC 2815
|||||| |||||||||||||
Sbjct 2158 TTACATCCCTTCTAAGAAATTC 2137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106233693305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5