BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69080.1
Length=883
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476038 jgi|Araly1|476038|fgenesh2_kg.2__1168__AT1G69080.1 1214 0.0
> Ahg476038 jgi|Araly1|476038|fgenesh2_kg.2__1168__AT1G69080.1
Length=738
Score = 1214 bits (657), Expect = 0.0
Identities = 711/738 (96%), Gaps = 0/738 (0%)
Strand=Plus/Plus
Query 10 agagagagagaAAGAAAGTATGGGAAAGAAAGGAGAAGGGTTCTTTGTGAGCAGATTAAG 69
||||||||||| |||||| ||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1 AGAGAGAGAGAGAGAAAGAATGGGAAAGAAAGGAGAAGGGTTCTTTCTGAGCAGAATAAG 60
Query 70 GGCTAATGTAAGAGTCCAACCACCGACAACTACGAGCCAGCATGGCTGCAGCCACGAGCC 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGCTAATGTAAGAGTCCAACCACCGACAACTACGAGCCAGCATGGCTGCAGCCACGAGCC 120
Query 130 ACCAACTACCTCCATAGAGATAAAAGGAAGAAGAATAATTGTTGTGGTTGATTCTTGCTC 189
|| ||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 ACAAACCACCTCCATAGGGATAAAAGGAAGAAGAATAATGGTTGTGGTTGATTCTTGCTC 180
Query 190 GGAGGCTAAAAACGCTTTGCTTTGGACACTCTCACATTGTGCTCAGCCTCAAGATTCCAT 249
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 GGAGGCTAAGAACGCTTTGCTTTGGACACTCTCGCATTGTGCTCAGCCTCAAGATTCCAT 240
Query 250 TCTTCTTCTCCATTTTCTTAAAGCTAAAACCTCTCAATCAGGTGATCTAGCTAACAAAGA 309
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 TCTTCTTCTCCATTTTCTTAAAGCTAAAACCTCTCAATCAGGTGATCTAGCTAACAAAAA 300
Query 310 AGAAGGAGAAGACGAATCTTGTGACAAACCAACAACGTCAAGAGCTGATAAAAAGGTTTC 369
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGTAGGAGAAGACGAATCTTGTGACAAACCAACAACGTCAAGAGCTGATAAAAAGGTTTC 360
Query 370 AGCCTTGAAAACCATGTGTGAGCTTAAAAGACCTGAGGTAAAAACAGAAGTGGTGTTTGT 429
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 361 AGCCTTGAAAACCATGTGTGAGCTTAAAAGACCTGAGGTAAAGACAGAAGTGGTGGTTGT 420
Query 430 AAAAGGTGACGAGAAGGGTCCGACCATAGTGAAAGAGGCAAGAGAACGAGAAGCATCATT 489
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 421 AAAAGGTGACGAGAAGGGTCCGACCATAGTGAAAGAGGCAAGAGAACGAGAAGCCTCCTT 480
Query 490 ACTAGTTCTAGGCCAGAAGAAACAACATGCCACATGGCGGCTACTAATGGTATGGGCGTC 549
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATTGGTTCTAGGCCAGAAGAAACAACATGCCACATGGCGGCTACTAATGGTATGGGCGTC 540
Query 550 GCAGGCCCGACCCGTGACCAAACACGACTTCGTCGAGTATTGCATCAACAACTCTCCTTG 609
|||| ||||||||| | |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 541 GCAGTCCCGACCCGCGCCCAAACACGACTTCGTCGAGTATTGCATCAACAACTCTTCTTG 600
Query 610 CATGGCTATTGCGGTTCGTAAGAGAGGCAAGAAGCTTGGTGGATACACTCTTACAACTAA 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CATGGCTATTGCGGTTCGTAAGAGAGGCAAGAAGCTTGGTGGATACACTCTTACAACTAA 660
Query 670 ACGTCACAAAGATTTCTGGCTTCTTGCCTGAATTAATTATCTATTCACATATAAATTAAT 729
|||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 661 ACGTCACAAAGATTTCTGGCTTCTTGCCTGAAATAGTTATCTATTCACATCTAAATTAAT 720
Query 730 ATAACTTTTTTaaaaaaa 747
||||| ||| ||||||||
Sbjct 721 ATAACCTTTCTAAAAAAA 738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32709462786
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5