BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G69100.1

Length=1104
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926203 jgi|Araly1|926203|scaffold_201764.1                        416    2e-115


> Ahg926203 jgi|Araly1|926203|scaffold_201764.1
Length=769

 Score =  416 bits (225),  Expect = 2e-115
 Identities = 429/521 (82%), Gaps = 39/521 (7%)
 Strand=Plus/Plus

Query  440  GTGTTAAATTTGATGGAGTTA-TTGGGTTGGGCATCAAATCTTCACGTGCGCAAGGATCT  498
            |||||||||||||||| | || ||| |||||||||||||||||||  ||||| |||||||
Sbjct  271  GTGTTAAATTTGATGGTG-TACTTGTGTTGGGCATCAAATCTTCATTTGCGCCAGGATCT  329

Query  499  GTCACGGTTTGGGAAAACATGGTGAAACAAAAGTTGATAACTAAACCTATTTTCTC-TTT  557
            |||||| ||| ||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct  330  GTCACGATTTTGGAAAACATGGTGAAACAAAAATTGATAACTAAACCCATTTTCTCGTTT  389

Query  558  ATATTTGAGGCCACACAAGGGAGAT-GG-A-GGAGAAGATCCAAATGGTGGCCAGATCA-  613
             |   ||||| |  ||||||||||| || | || |||||||| || ||||||||||| | 
Sbjct  390  -TGGCTGAGGTCGTACAAGGGAGATGGGAAGGGCGAAGATCCTAACGGTGGCCAGAT-AG  447

Query  614  TGTTTGGTGGGTTTGACCCGAAGCAGTTCAAGGGAGAACATGTTTATGTACCGATGAAAC  673
            ||||||||||||||||||| || || ||| | ||||||||||  |||||     |    |
Sbjct  448  TGTTTGGTGGGTTTGACCCCAAACACTTCCACGGAGAACATGCCTATGT-----T---TC  499

Query  674  TAAGCGACGACCGCTGGAAGATCAAAATGTCCAAAATTTACATTAATGGTAAACCAGCGA  733
             |||||||||||||||||||||||||||||||||||| ||||  ||||||||||||| ||
Sbjct  500  -AAGCGACGACCGCTGGAAGATCAAAATGTCCAAAATATACAACAATGGTAAACCAG-GA  557

Query  734  TCAACT-TTTGTGATGATGTAGAATGCACAGCAATGGTTGACTCTGGATCGACTGACATT  792
             ||| | |||||||   | || |||||| |||||| |||||||| ||| | || ||||||
Sbjct  558  ACAAATCTTTGTGA--CT-TACAATGCAAAGCAATCGTTGACTCGGGAACAACCGACATT  614

Query  793  TTTGGCCCGGATGAAGCTGTCGGTAAAATCTAT--A--AAGAAATTGGAGCAACCA-A-A  846
            | ||||||    | ||||||| |||| ||||||  |  ||| ||||||||| | || | |
Sbjct  615  TCTGGCCC---CG-AGCTGTCCGTAAGATCTATAGATGAAGCAATTGGAGC-A-CATAGA  668

Query  847  GTAATAATTAGATGCGAGCAGTTTCCTGCTTTGCCGGATATCTACTTCGAAATTGGAGGA  906
            |||| ||||| ||||||  || ||||||||||||||||||||||||||||||||||||||
Sbjct  669  GTAACAATTAAATGCGATAAGGTTCCTGCTTTGCCGGATATCTACTTCGAAATTGGAGGA  728

Query  907  AAACA-T-CTACGCCTCACTAAACATGAT-TACGTTGAGGT  944
            ||| | | || |||||||||||| ||||| |||| | ||||
Sbjct  729  AAA-AGTTCTTCGCCTCACTAAAGATGATGTACGATCAGGT  768



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41134627443


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5