BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G69120.1 Length=1228 Score E Sequences producing significant alignments: (Bits) Value Ahg476039 jgi|Araly1|476039|fgenesh2_kg.2__1169__AT1G69120.1 1988 0.0 Ahg921628 jgi|Araly1|921628|scaffold_102909.1 682 0.0 Ahg950843 jgi|Araly1|950843|scaffold_802730.1 231 7e-60 Ahg472923 jgi|Araly1|472923|fgenesh2_kg.1__2877__AT1G24260.1 134 2e-30 Ahg896343 jgi|Araly1|896343|Al_scaffold_0005_309 93.5 3e-18 > Ahg476039 jgi|Araly1|476039|fgenesh2_kg.2__1169__AT1G69120.1 Length=1228 Score = 1988 bits (1076), Expect = 0.0 Identities = 1184/1234 (96%), Gaps = 15/1234 (1%) Strand=Plus/Plus Query 1 CCTAAAACCACTCTTACCCAAATCTCTCCATAAATAAAGATCCCGAGACTCAAACACAAG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CCTAAAACCACTCTTACCCAAATCTCTCCATAAATAAAGATCCCGAGACTCAAACACAAG 60 Query 61 TCTTTTTATAAAGGAAAGAAAGAAAAACTTTCCTAATTGGTTCATACCAAAGTCTGAGCT 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCTTATTATAAAGGAAAGAAAGAAAAACTTTCCTAATTGGTTCATACCAAAGTCTGAGCT 120 Query 121 CTTCTTTATATCT-CTCTTGTAGTTTCTTATTGGGGGTCTTTGTTTTGTTTGGTTCTTTT 179 ||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 121 CTTCTTTATAT-TACTCTTGTAGTTTCTTATCGGGGGTCTTTGTTTTGTTTGGTTCTTTT 179 Query 180 AGAGTAAGAAGTTTCTTAAAAAAGGATCAAAAATGGGAAGGGGTAGGGTTCAATTGAAGA 239 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 180 AGAGTAAGAAGTTTCTTAAAAAAGGATCAAAAATGGGGAGGGGTAGGGTTCAATTGAAGA 239 Query 240 GGATAGAGAACAAGATCAATAGACAAGTGACATTCTCGAAAAGAAGAGCTGGTCTTTTGA 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 GGATAGAGAACAAGATCAATAGACAAGTGACATTCTCGAAAAGAAGAGCTGGTCTTTTGA 299 Query 300 AGAAAGCTCATGAGATCTCTGTTCTCTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCCC 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 AGAAAGCTCATGAGATCTCTGTTCTCTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCCC 359 Query 360 ATAAGGGAAAACTCTTCGAATACTCCACTGATTCTTGTATGGAGAAGATACTTGAACGCT 419 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 ATAAGGGGAAACTCTTCGAATACTCCACTGATTCTTGTATGGAGAAGATACTTGAACGCT 419 Query 420 ATGAGAGGTACTCTTACGCCGAAAGACAGCTTATTGCACCTGAGTCCGACGTCAATACAA 479 |||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| | Sbjct 420 ATGAGAGGTACTCTTACGCCGAGAGACAGCTTATTGCACCTGAGTCTGATGTCAATACGA 479 Query 480 ACTGGTCGATGGAGTATAACAGGCTTAAGGCTAAGATTGAGCTTTTGGAGAGAAACCAGA 539 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 480 ACTGGTCGATGGAGTATAACAGGCTTAAGGCTAAGATTGAACTTTTGGAGAGAAACCAGA 539 Query 540 GGCATTATCTTGGGGAAGACTTGCAA-GCAATGAGCCCTAAAGAGCTTCAGAATCTGGAG 598 ||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| Sbjct 540 GGCATTATCTTGGGGAAGACTTG-AATGCAATGAGCCCTAAGGAGCTTCAGAATCTGGAG 598 Query 599 CAGCAGCTTGACACTGCTCTTAAGCACATCCGCACTAGAAAAAACCAACTTATGTACGAG 658 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 CAGCAGCTTGACACTGCTCTTAAGCACATCCGCACTAGAAAAAACCAACTTATGTACGAA 658 Query 659 TCCATCAATGAGCTCCaaaaaaaGGAGAAGGCCATACAGGAGCAAAACAGCATGCTTTCT 718 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 659 TCCATCAATGAGCTCCAAAGAAAGGAGAAGGCCATACAGGAGCAAAACAGCATGCTTTCT 718 Query 719 AAACAGATCAAGGAGAGGGAAAAAATTCTTAGGGCTCAACAGGAGCAGTGGGATCAGCAG 778 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 719 AAACAGATCAAGGAGAGGGAAAAAATTCTTAGGGCTCAACAAGAGCAGTGGGATCAGCAG 778 Query 779 AACCAAGGCCACAATATGCCTCCCCCTCTGCCACCGCAGCAGCACCAAATCCAGCATCCT 838 ||||| |||||||||||||||||||||| || ||||||||||| ||||||||||||||| Sbjct 779 AACCATGGCCACAATATGCCTCCCCCTCCACCGCCGCAGCAGCATCAAATCCAGCATCCT 838 Query 839 TACATGCTCTCTCATCAGCCATCTCCTTTTCTCAACATGGGTGGTCTGTATCAAGAAGAT 898 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 839 TACATGCTCTCTCATCAGCCATCTCCTTTTCTTAACATGGGTGGTCTGTATCAAGAAGAA 898 Query 899 GATCCTATGGCAATGAGGAGGAATGATCTCGAACTGACTCTTGAACCCGTTTACAACTGC 958 ||||| ||||||||||||||||| || |||||||||||||||||||| |||||||||||| Sbjct 899 GATCCAATGGCAATGAGGAGGAACGAACTCGAACTGACTCTTGAACCTGTTTACAACTGC 958 Query 959 AACCTTGGCTGCTTCGCCGCATGAAGCATTTCCATATATATAT-TTGTA-A-TCGTCAAC 1015 |||||||||||||||||||||||||||| |||||||||||||| || || | |||||||| Sbjct 959 AACCTTGGCTGCTTCGCCGCATGAAGCACTTCCATATATATATATTTTATAATCGTCAAC 1018 Query 1016 AATAAAAACAGTTTGCCACATACATATAAATAGTGGCTAGGCTCTTTTCATCCAATTAAT 1075 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 AATAAAAACAATTAGCCACATACATATAAATAGTGGCTAGGCTCTTTTCATCCAATTAAT 1078 Query 1076 -A-TAT-TTT-GGCAAATGTTCGATGTTCTTATATCATCATATATAAATTAGCAGGCTCC 1131 | ||| ||| ||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct 1079 TAATATATTTTGGCAA--GTTCGATGTTCTTATATCATCATATATAAATTAGCAAGCTCC 1136 Query 1132 TTTCTTCTTTTGTAATTTGATAAGTTTATTTGCTTCAATATGGAGCAAAATTGTAATATA 1191 ||| |||||| ||||||| |||||||| ||||||||||||||| |||||||||||||||| Sbjct 1137 TTT-TTCTTT-GTAATTTTATAAGTTTGTTTGCTTCAATATGGGGCAAAATTGTAATATA 1194 Query 1192 TTTGAAGGTCAGAGAGAATGAACGTGAACTTAAT 1225 ||||| |||| ||||||||||||| ||||||||| Sbjct 1195 TTTGACGGTCGGAGAGAATGAACGGGAACTTAAT 1228 > Ahg921628 jgi|Araly1|921628|scaffold_102909.1 Length=811 Score = 682 bits (369), Expect = 0.0 Identities = 655/790 (83%), Gaps = 32/790 (4%) Strand=Plus/Plus Query 210 AAATGGGAAGGGGTAGGGTTCAATTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGA 269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19 AAATGGGAAGGGGTAGGGTTCAATTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGA 78 Query 270 CATTCTCGAAAAGAAGAGCTGGTCTTTTGAAGAAAGCTCATGAGATCTCTGTTCTCTGTG 329 ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 79 CATTCTCTAAAAGAAGAGCTGGTCTTTTGAAGAAAGCTCAGGAGATCTCTGTTCTTTGTG 138 Query 330 ATGCTGAAGTTGCTCTTGTTGTCTTCTCCCATAAGGGAAAACTCTTCGAATACTCCACTG 389 |||| || ||| | ||| ||||||||||||||||||| ||| | ||||| ||| || ||| Sbjct 139 ATGCCGAGGTTTCCCTTATTGTCTTCTCCCATAAGGGGAAATTGTTCGAGTACACCTCTG 198 Query 390 ATTCTTGTATGGAGAA-GATACTTGAACGCTATGAGAGGTACTCTTACGCCGAAAGACAG 448 | ||||| |||||||| | |||| |||||||| |||||||| || |||||||| || ||| Sbjct 199 AATCTTGCATGGAGAAAG-TACTCGAACGCTACGAGAGGTATTCGTACGCCGAGAGGCAG 257 Query 449 CTTATTGCACCTGAGTC-CGACGTCAAT--ACA----AACTGGTCGATGGAGTATAACAG 501 || ||||||||||| || | || | ||| ||| || ||||| |||||||||| ||| Sbjct 258 CTGATTGCACCTGACTCTC-ACATTAATGCACAGCCGAATTGGTCAATGGAGTATAGCAG 316 Query 502 GCTTAAGGCTAAGATTGAGCTTTTGGAGAGAAACCAGAGGCATTATCTTGGGGAAGACTT 561 ||||||||||||||| |||||||||||||| ||||| ||||||||||| || |||||||| Sbjct 317 GCTTAAGGCTAAGATCGAGCTTTTGGAGAGGAACCAAAGGCATTATCTAGGAGAAGACTT 376 Query 562 GCAAGCAATGAGCCCTAAAG-AGCTTCAGAATCTGGAGCAGCAGCTTGACACTGCTCTTA 620 | || ||||||||| | ||| | || || |||||||||||||||||||| |||||||||| Sbjct 377 GGAACCAATGAGCC-TCAAGGATCTCCAAAATCTGGAGCAGCAGCTTGAGACTGCTCTTA 435 Query 621 AGCACATCCGCACTAGAAAAAACCAACTTATGTACGAGTCCATCAATGAGCTCCaaaaaa 680 ||||||| ||| | |||||||| ||||| |||||||||||| |||| | ||||||| || Sbjct 436 AGCACATTCGCTCCAGAAAAAATCAACTCATGTACGAGTCCCTCAACCACCTCCAAAGAA 495 Query 681 aGGAGAAGGCCATACAGGAGCAAAACAGCATGCTTTCTAAACAGATCAAGGAGAGGGAAA 740 ||||||| | ||||||||| |||||||||||||| | |||||||| ||||||||||||| Sbjct 496 AGGAGAATGAGATACAGGAGGAAAACAGCATGCTTACCAAACAGATAAAGGAGAGGGAAA 555 Query 741 AAATTCTTAGGGCTCAACAGGAGC-AGTGGGATCAGCAGAACC--AAGGCCACAATATGC 797 | || || ||| | ||| | | | | || || |||| ||||| || |||| || | | Sbjct 556 ACATCCTAAGGACACAAAAA-ACCCAATGTGAGCAGCTGAACCGCAA--CCACGATGTAC 612 Query 798 CTCCCCCTCTGCCACCGCAGC-AGCACCAA-ATCCAGCATCCTTACATGCTCTCTCATCA 855 | || || || |||||| | | | || | || |||||||||||| |||||||||| Sbjct 613 CACCGCC---GCAACCGCAACCATTTC-AACACCCT-CATCCTTACATGATCTCTCATCA 667 Query 856 GCCATCTCCTTTTCTCAACATGGGTGGTC-TGTATCAAGAAGATGATCCTATGGCAATGA 914 | | |||||||| || || ||||||| | |||| |||| ||| |||| | ||| |||| Sbjct 668 GACTTCTCCTTTCCTAAATTTGGGTGG-CATGTACCAAGGAGAAGATCAAACGGCGATGA 726 Query 915 GGAGGAATGATCTCGAACTGACTCTTGAACCCGTTTACAACTGCAACCTTGGCTGCTT-C 973 ||||||| |||| || ||||||||||||||| ||||||| | | ||||||||| || | Sbjct 727 GGAGGAACAATCTGGATCTGACTCTTGAACCCATTTACAATT--A-CCTTGGCTG-TTAC 782 Query 974 GCCGCATGAA 983 ||||| |||| Sbjct 783 GCCGCTTGAA 792 > Ahg950843 jgi|Araly1|950843|scaffold_802730.1 Length=869 Score = 231 bits (125), Expect = 7e-60 Identities = 188/217 (87%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 212 ATGGGAAGGGGTAGGGTTCAATTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGACA 271 |||||||| ||||||||||| |||||||||||||||||||||||||||| ||||| || Sbjct 120 ATGGGAAGAGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTTACT 179 Query 272 TTCTCGAAA-AGAAGAG-CTGGTCTTT-TGAAGAAAGCTCATGAGATCTCTGTTCTCTGT 328 ||||| ||| ||||| | ||||| || | ||||||||||||||||||||||||||||| Sbjct 180 TTCTC-AAAGAGAAG-GTCTGGT-TTGCTCAAGAAAGCTCATGAGATCTCTGTTCTCTGC 236 Query 329 GATGCTGAAGTTGCTCTTGTTGTCTTCTC--CCATAAGGGAAAACTCTTCGAATACTCCA 386 |||||||| |||||||| | |||||||| ||| |||| ||| ||||||||||| |||| Sbjct 237 GATGCTGAGGTTGCTCTCATCGTCTTCTCTTCCA-AAGGCAAA-CTCTTCGAATATTCCA 294 Query 387 CTGATTCTTGTATGGAGAAGATACTTGAACGCTATGA 423 | || ||||| ||||||| |||||||||||||||||| Sbjct 295 CCGACTCTTGCATGGAGAGGATACTTGAACGCTATGA 331 > Ahg472923 jgi|Araly1|472923|fgenesh2_kg.1__2877__AT1G24260.1 Length=924 Score = 134 bits (72), Expect = 2e-30 Identities = 121/143 (85%), Gaps = 10/143 (7%) Strand=Plus/Plus Query 208 AAAAATGGGAAG-GGGTAGGGTTCAATTGAAGAGGATAGAGAACAAGATCAATAGACAAG 266 |||||||||||| ||| || || ||||||||||||||||||||||||||||||| |||| Sbjct 36 AAAAATGGGAAGAGGG-AGAGTAGAATTGAAGAGGATAGAGAACAAGATCAATAGGCAAG 94 Query 267 TGACATTCT-CGAAA-AGAAG-AGCTGGTCTTTTGAAGAAAGC-TCATGAGATCTCTGTT 322 |||| || | | ||| ||||| | |||||||||||||||||| | | ||| | || ||| Sbjct 95 TGACGTT-TGC-AAAGAGAAGGAA-TGGTCTTTTGAAGAAAGCAT-ACGAGCTTTCAGTT 150 Query 323 CTCTGTGATGCTGAAGTTGCTCT 345 || |||||||| ||||||||||| Sbjct 151 CTATGTGATGCAGAAGTTGCTCT 173 > Ahg896343 jgi|Araly1|896343|Al_scaffold_0005_309 Length=807 Score = 93.5 bits (50), Expect = 3e-18 Identities = 97/118 (82%), Gaps = 10/118 (8%) Strand=Plus/Plus Query 234 TGAAGAGGATAGAGAACAAGATCAATAGACAAGTGACATTCT-CGAAA-AGAAG-AGCTG 290 |||||||||||||||||||||||||||||||||| || || | | ||| ||||| | || Sbjct 23 TGAAGAGGATAGAGAACAAGATCAATAGACAAGTTACTTT-TGC-AAAGAGAAGGAA-TG 79 Query 291 GTCTTT-TGAAGAAAGCTCATGAGATCTCTGTTCTCTGTGATGCTGA-AGTTGCTCTT 346 || || | ||||| ||| ||||| | ||||| || ||||||||||| | |||||||| Sbjct 80 GT-TTGCTCAAGAAGGCTTATGAGCTTTCTGTCCTTTGTGATGCTGAGA-TTGCTCTT 135 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45861869151 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5