BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69120.1
Length=1228
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476039 jgi|Araly1|476039|fgenesh2_kg.2__1169__AT1G69120.1 1988 0.0
Ahg921628 jgi|Araly1|921628|scaffold_102909.1 682 0.0
Ahg950843 jgi|Araly1|950843|scaffold_802730.1 231 7e-60
Ahg472923 jgi|Araly1|472923|fgenesh2_kg.1__2877__AT1G24260.1 134 2e-30
Ahg896343 jgi|Araly1|896343|Al_scaffold_0005_309 93.5 3e-18
> Ahg476039 jgi|Araly1|476039|fgenesh2_kg.2__1169__AT1G69120.1
Length=1228
Score = 1988 bits (1076), Expect = 0.0
Identities = 1184/1234 (96%), Gaps = 15/1234 (1%)
Strand=Plus/Plus
Query 1 CCTAAAACCACTCTTACCCAAATCTCTCCATAAATAAAGATCCCGAGACTCAAACACAAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCTAAAACCACTCTTACCCAAATCTCTCCATAAATAAAGATCCCGAGACTCAAACACAAG 60
Query 61 TCTTTTTATAAAGGAAAGAAAGAAAAACTTTCCTAATTGGTTCATACCAAAGTCTGAGCT 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTATTATAAAGGAAAGAAAGAAAAACTTTCCTAATTGGTTCATACCAAAGTCTGAGCT 120
Query 121 CTTCTTTATATCT-CTCTTGTAGTTTCTTATTGGGGGTCTTTGTTTTGTTTGGTTCTTTT 179
||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 CTTCTTTATAT-TACTCTTGTAGTTTCTTATCGGGGGTCTTTGTTTTGTTTGGTTCTTTT 179
Query 180 AGAGTAAGAAGTTTCTTAAAAAAGGATCAAAAATGGGAAGGGGTAGGGTTCAATTGAAGA 239
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 180 AGAGTAAGAAGTTTCTTAAAAAAGGATCAAAAATGGGGAGGGGTAGGGTTCAATTGAAGA 239
Query 240 GGATAGAGAACAAGATCAATAGACAAGTGACATTCTCGAAAAGAAGAGCTGGTCTTTTGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GGATAGAGAACAAGATCAATAGACAAGTGACATTCTCGAAAAGAAGAGCTGGTCTTTTGA 299
Query 300 AGAAAGCTCATGAGATCTCTGTTCTCTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCCC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGAAAGCTCATGAGATCTCTGTTCTCTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCCC 359
Query 360 ATAAGGGAAAACTCTTCGAATACTCCACTGATTCTTGTATGGAGAAGATACTTGAACGCT 419
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATAAGGGGAAACTCTTCGAATACTCCACTGATTCTTGTATGGAGAAGATACTTGAACGCT 419
Query 420 ATGAGAGGTACTCTTACGCCGAAAGACAGCTTATTGCACCTGAGTCCGACGTCAATACAA 479
|||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |
Sbjct 420 ATGAGAGGTACTCTTACGCCGAGAGACAGCTTATTGCACCTGAGTCTGATGTCAATACGA 479
Query 480 ACTGGTCGATGGAGTATAACAGGCTTAAGGCTAAGATTGAGCTTTTGGAGAGAAACCAGA 539
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 480 ACTGGTCGATGGAGTATAACAGGCTTAAGGCTAAGATTGAACTTTTGGAGAGAAACCAGA 539
Query 540 GGCATTATCTTGGGGAAGACTTGCAA-GCAATGAGCCCTAAAGAGCTTCAGAATCTGGAG 598
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 540 GGCATTATCTTGGGGAAGACTTG-AATGCAATGAGCCCTAAGGAGCTTCAGAATCTGGAG 598
Query 599 CAGCAGCTTGACACTGCTCTTAAGCACATCCGCACTAGAAAAAACCAACTTATGTACGAG 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CAGCAGCTTGACACTGCTCTTAAGCACATCCGCACTAGAAAAAACCAACTTATGTACGAA 658
Query 659 TCCATCAATGAGCTCCaaaaaaaGGAGAAGGCCATACAGGAGCAAAACAGCATGCTTTCT 718
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCCATCAATGAGCTCCAAAGAAAGGAGAAGGCCATACAGGAGCAAAACAGCATGCTTTCT 718
Query 719 AAACAGATCAAGGAGAGGGAAAAAATTCTTAGGGCTCAACAGGAGCAGTGGGATCAGCAG 778
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 719 AAACAGATCAAGGAGAGGGAAAAAATTCTTAGGGCTCAACAAGAGCAGTGGGATCAGCAG 778
Query 779 AACCAAGGCCACAATATGCCTCCCCCTCTGCCACCGCAGCAGCACCAAATCCAGCATCCT 838
||||| |||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 779 AACCATGGCCACAATATGCCTCCCCCTCCACCGCCGCAGCAGCATCAAATCCAGCATCCT 838
Query 839 TACATGCTCTCTCATCAGCCATCTCCTTTTCTCAACATGGGTGGTCTGTATCAAGAAGAT 898
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 839 TACATGCTCTCTCATCAGCCATCTCCTTTTCTTAACATGGGTGGTCTGTATCAAGAAGAA 898
Query 899 GATCCTATGGCAATGAGGAGGAATGATCTCGAACTGACTCTTGAACCCGTTTACAACTGC 958
||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 899 GATCCAATGGCAATGAGGAGGAACGAACTCGAACTGACTCTTGAACCTGTTTACAACTGC 958
Query 959 AACCTTGGCTGCTTCGCCGCATGAAGCATTTCCATATATATAT-TTGTA-A-TCGTCAAC 1015
|||||||||||||||||||||||||||| |||||||||||||| || || | ||||||||
Sbjct 959 AACCTTGGCTGCTTCGCCGCATGAAGCACTTCCATATATATATATTTTATAATCGTCAAC 1018
Query 1016 AATAAAAACAGTTTGCCACATACATATAAATAGTGGCTAGGCTCTTTTCATCCAATTAAT 1075
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AATAAAAACAATTAGCCACATACATATAAATAGTGGCTAGGCTCTTTTCATCCAATTAAT 1078
Query 1076 -A-TAT-TTT-GGCAAATGTTCGATGTTCTTATATCATCATATATAAATTAGCAGGCTCC 1131
| ||| ||| ||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1079 TAATATATTTTGGCAA--GTTCGATGTTCTTATATCATCATATATAAATTAGCAAGCTCC 1136
Query 1132 TTTCTTCTTTTGTAATTTGATAAGTTTATTTGCTTCAATATGGAGCAAAATTGTAATATA 1191
||| |||||| ||||||| |||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1137 TTT-TTCTTT-GTAATTTTATAAGTTTGTTTGCTTCAATATGGGGCAAAATTGTAATATA 1194
Query 1192 TTTGAAGGTCAGAGAGAATGAACGTGAACTTAAT 1225
||||| |||| ||||||||||||| |||||||||
Sbjct 1195 TTTGACGGTCGGAGAGAATGAACGGGAACTTAAT 1228
> Ahg921628 jgi|Araly1|921628|scaffold_102909.1
Length=811
Score = 682 bits (369), Expect = 0.0
Identities = 655/790 (83%), Gaps = 32/790 (4%)
Strand=Plus/Plus
Query 210 AAATGGGAAGGGGTAGGGTTCAATTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGA 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 19 AAATGGGAAGGGGTAGGGTTCAATTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGA 78
Query 270 CATTCTCGAAAAGAAGAGCTGGTCTTTTGAAGAAAGCTCATGAGATCTCTGTTCTCTGTG 329
||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 79 CATTCTCTAAAAGAAGAGCTGGTCTTTTGAAGAAAGCTCAGGAGATCTCTGTTCTTTGTG 138
Query 330 ATGCTGAAGTTGCTCTTGTTGTCTTCTCCCATAAGGGAAAACTCTTCGAATACTCCACTG 389
|||| || ||| | ||| ||||||||||||||||||| ||| | ||||| ||| || |||
Sbjct 139 ATGCCGAGGTTTCCCTTATTGTCTTCTCCCATAAGGGGAAATTGTTCGAGTACACCTCTG 198
Query 390 ATTCTTGTATGGAGAA-GATACTTGAACGCTATGAGAGGTACTCTTACGCCGAAAGACAG 448
| ||||| |||||||| | |||| |||||||| |||||||| || |||||||| || |||
Sbjct 199 AATCTTGCATGGAGAAAG-TACTCGAACGCTACGAGAGGTATTCGTACGCCGAGAGGCAG 257
Query 449 CTTATTGCACCTGAGTC-CGACGTCAAT--ACA----AACTGGTCGATGGAGTATAACAG 501
|| ||||||||||| || | || | ||| ||| || ||||| |||||||||| |||
Sbjct 258 CTGATTGCACCTGACTCTC-ACATTAATGCACAGCCGAATTGGTCAATGGAGTATAGCAG 316
Query 502 GCTTAAGGCTAAGATTGAGCTTTTGGAGAGAAACCAGAGGCATTATCTTGGGGAAGACTT 561
||||||||||||||| |||||||||||||| ||||| ||||||||||| || ||||||||
Sbjct 317 GCTTAAGGCTAAGATCGAGCTTTTGGAGAGGAACCAAAGGCATTATCTAGGAGAAGACTT 376
Query 562 GCAAGCAATGAGCCCTAAAG-AGCTTCAGAATCTGGAGCAGCAGCTTGACACTGCTCTTA 620
| || ||||||||| | ||| | || || |||||||||||||||||||| ||||||||||
Sbjct 377 GGAACCAATGAGCC-TCAAGGATCTCCAAAATCTGGAGCAGCAGCTTGAGACTGCTCTTA 435
Query 621 AGCACATCCGCACTAGAAAAAACCAACTTATGTACGAGTCCATCAATGAGCTCCaaaaaa 680
||||||| ||| | |||||||| ||||| |||||||||||| |||| | ||||||| ||
Sbjct 436 AGCACATTCGCTCCAGAAAAAATCAACTCATGTACGAGTCCCTCAACCACCTCCAAAGAA 495
Query 681 aGGAGAAGGCCATACAGGAGCAAAACAGCATGCTTTCTAAACAGATCAAGGAGAGGGAAA 740
||||||| | ||||||||| |||||||||||||| | |||||||| |||||||||||||
Sbjct 496 AGGAGAATGAGATACAGGAGGAAAACAGCATGCTTACCAAACAGATAAAGGAGAGGGAAA 555
Query 741 AAATTCTTAGGGCTCAACAGGAGC-AGTGGGATCAGCAGAACC--AAGGCCACAATATGC 797
| || || ||| | ||| | | | | || || |||| ||||| || |||| || | |
Sbjct 556 ACATCCTAAGGACACAAAAA-ACCCAATGTGAGCAGCTGAACCGCAA--CCACGATGTAC 612
Query 798 CTCCCCCTCTGCCACCGCAGC-AGCACCAA-ATCCAGCATCCTTACATGCTCTCTCATCA 855
| || || || |||||| | | | || | || |||||||||||| ||||||||||
Sbjct 613 CACCGCC---GCAACCGCAACCATTTC-AACACCCT-CATCCTTACATGATCTCTCATCA 667
Query 856 GCCATCTCCTTTTCTCAACATGGGTGGTC-TGTATCAAGAAGATGATCCTATGGCAATGA 914
| | |||||||| || || ||||||| | |||| |||| ||| |||| | ||| ||||
Sbjct 668 GACTTCTCCTTTCCTAAATTTGGGTGG-CATGTACCAAGGAGAAGATCAAACGGCGATGA 726
Query 915 GGAGGAATGATCTCGAACTGACTCTTGAACCCGTTTACAACTGCAACCTTGGCTGCTT-C 973
||||||| |||| || ||||||||||||||| ||||||| | | ||||||||| || |
Sbjct 727 GGAGGAACAATCTGGATCTGACTCTTGAACCCATTTACAATT--A-CCTTGGCTG-TTAC 782
Query 974 GCCGCATGAA 983
||||| ||||
Sbjct 783 GCCGCTTGAA 792
> Ahg950843 jgi|Araly1|950843|scaffold_802730.1
Length=869
Score = 231 bits (125), Expect = 7e-60
Identities = 188/217 (87%), Gaps = 10/217 (5%)
Strand=Plus/Plus
Query 212 ATGGGAAGGGGTAGGGTTCAATTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGACA 271
|||||||| ||||||||||| |||||||||||||||||||||||||||| ||||| ||
Sbjct 120 ATGGGAAGAGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTTACT 179
Query 272 TTCTCGAAA-AGAAGAG-CTGGTCTTT-TGAAGAAAGCTCATGAGATCTCTGTTCTCTGT 328
||||| ||| ||||| | ||||| || | |||||||||||||||||||||||||||||
Sbjct 180 TTCTC-AAAGAGAAG-GTCTGGT-TTGCTCAAGAAAGCTCATGAGATCTCTGTTCTCTGC 236
Query 329 GATGCTGAAGTTGCTCTTGTTGTCTTCTC--CCATAAGGGAAAACTCTTCGAATACTCCA 386
|||||||| |||||||| | |||||||| ||| |||| ||| ||||||||||| ||||
Sbjct 237 GATGCTGAGGTTGCTCTCATCGTCTTCTCTTCCA-AAGGCAAA-CTCTTCGAATATTCCA 294
Query 387 CTGATTCTTGTATGGAGAAGATACTTGAACGCTATGA 423
| || ||||| ||||||| ||||||||||||||||||
Sbjct 295 CCGACTCTTGCATGGAGAGGATACTTGAACGCTATGA 331
> Ahg472923 jgi|Araly1|472923|fgenesh2_kg.1__2877__AT1G24260.1
Length=924
Score = 134 bits (72), Expect = 2e-30
Identities = 121/143 (85%), Gaps = 10/143 (7%)
Strand=Plus/Plus
Query 208 AAAAATGGGAAG-GGGTAGGGTTCAATTGAAGAGGATAGAGAACAAGATCAATAGACAAG 266
|||||||||||| ||| || || ||||||||||||||||||||||||||||||| ||||
Sbjct 36 AAAAATGGGAAGAGGG-AGAGTAGAATTGAAGAGGATAGAGAACAAGATCAATAGGCAAG 94
Query 267 TGACATTCT-CGAAA-AGAAG-AGCTGGTCTTTTGAAGAAAGC-TCATGAGATCTCTGTT 322
|||| || | | ||| ||||| | |||||||||||||||||| | | ||| | || |||
Sbjct 95 TGACGTT-TGC-AAAGAGAAGGAA-TGGTCTTTTGAAGAAAGCAT-ACGAGCTTTCAGTT 150
Query 323 CTCTGTGATGCTGAAGTTGCTCT 345
|| |||||||| |||||||||||
Sbjct 151 CTATGTGATGCAGAAGTTGCTCT 173
> Ahg896343 jgi|Araly1|896343|Al_scaffold_0005_309
Length=807
Score = 93.5 bits (50), Expect = 3e-18
Identities = 97/118 (82%), Gaps = 10/118 (8%)
Strand=Plus/Plus
Query 234 TGAAGAGGATAGAGAACAAGATCAATAGACAAGTGACATTCT-CGAAA-AGAAG-AGCTG 290
|||||||||||||||||||||||||||||||||| || || | | ||| ||||| | ||
Sbjct 23 TGAAGAGGATAGAGAACAAGATCAATAGACAAGTTACTTT-TGC-AAAGAGAAGGAA-TG 79
Query 291 GTCTTT-TGAAGAAAGCTCATGAGATCTCTGTTCTCTGTGATGCTGA-AGTTGCTCTT 346
|| || | ||||| ||| ||||| | ||||| || ||||||||||| | ||||||||
Sbjct 80 GT-TTGCTCAAGAAGGCTTATGAGCTTTCTGTCCTTTGTGATGCTGAGA-TTGCTCTT 135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45861869151
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5