BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69170.1
Length=1829
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339154 jgi|Araly1|339154|fgenesh1_pg.C_scaffold_2001253 1838 0.0
Ahg935081 jgi|Araly1|935081|scaffold_403069.1 87.9 2e-16
> Ahg339154 jgi|Araly1|339154|fgenesh1_pg.C_scaffold_2001253
Length=1230
Score = 1838 bits (995), Expect = 0.0
Identities = 1162/1238 (94%), Gaps = 30/1238 (2%)
Strand=Plus/Plus
Query 389 GATGGATTCTTGGAGCTACGGGAGAAGCGTTTTCATGTCAAATGAAACTCTTTTACCTTG 448
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 GAT-GATTCTTGGAGCTACGGGAGAAGCGTTTTCATGTCAAATGAAACTCTTTTACCTTG 62
Query 449 TGATACTTTTGCTAAGAATAGAAGATTTGAACAGAGACTCTC---T-AA-T-----A--A 496
|||| |||||||| |||||||||||||||||||||||||||| | || | | |
Sbjct 63 TGATTCTTTTGCTGAGAATAGAAGATTTGAACAGAGACTCTCTAATGAATTGAGGAATGA 122
Query 497 TGATGATG---TGTTGATTTCTGACATGGCTGGTAACTCCAATGGATTCAGTGCTGTTTC 553
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 TGATGATGATTTGTTGATTTCTGACATGGCTGGTAACTCCAATGGATTCAGTGCTGTTTC 182
Query 554 TATTACTAAAGTTGTTCCTGAAGAGGAAGATGAGGAGAA-CATATCTTCTTCTTCAAAGT 612
|||||| ||||| ||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 183 TATTACCAAAGTGGTTCCTGAAGAGGAAGAGGAGGAGAACCA-ATCTTCTTCTTCAAAGT 241
Query 613 TCTCTAGTCAGGAATTGAATAGGATAGATTTCAAACTTAGGAGCTTTTTGGATTTAGGAA 672
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 242 TGTCTAGTCAGGAATTGAATAGGATAGATTTCAAACTTAGGAGCATTTTGGATTTAGG-A 300
Query 673 ATGATGATGATGATACATCCTCTAGAGGTTTTGCTCTGCCATCTAAAAAGTCTCGAGCTT 732
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 A--ATGATGATGATACATCCTCTAGAGGTTTTGCTCTGCCAGCTAAAAAGTCTCGAGCTT 358
Query 733 CAAACTTGTGCTCTCAGAATCCCTTGTGTCAAGTTTATGGGTGTAGTAAGGATCTGAGCT 792
||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 359 CAAACATGTGCTCTCAGAATCCCTTGTGTCAAGTTTATGGGTGTAATATGGATCTGAGCT 418
Query 793 CTTCGAAAGATTACCACAAAAGGCATAGAGTTTGCGAGGCTCATTCGAAAACTTCTGTGG 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 419 CTTCGAAAGATTACCACAAAAGGCATAGAGTTTGCGAGGCTCATTCGAAAACTTCCGTGG 478
Query 853 TCATAGTTAATGGTCTTGAACAGAGGTTTTGTCAACAGTGCAGCAGGTTTCATTTCCTCT 912
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TCGTAGTTAAGGGTCTTGAACAGAGGTTTTGTCAACAGTGCAGCAGGTTTCATTTCCTCT 538
Query 913 CAGAGTTTGATGATGGCAAAAGAAGTTGCAGAAGGCGATTAGCCGGTCACAATGAACGAA 972
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 539 CAGAATTTGATGATGGCAAAAGAAGTTGCAGAAGGCGATTAGCTGGTCACAATGAACGAA 598
Query 973 GAAGGAAACCTGCATTCTATTTCCTACCGGGTAAGCGCCATAAGCTTCTTCGCACCTCTC 1032
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GAAGAAAACCTGCATTCTATTTCCTACCGGGTAAGCGCCATAAGCTTCTTCGCACCTCTC 658
Query 1033 AAGATGTAGTAGGCAACAAGTTTCTGGAGAATTCATCATTGGTATTGCCAGAGTCATTTC 1092
||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 659 AAGGTGTAGTAGGCAACAAGTTTCTGGAGAATTCATCGTTGCTATTGCCAGAGTCATTTC 718
Query 1093 CTGGTAGTCTCTTATACAGAGTAATAGATGAAGACGACCACCGTACAAGTAGACTCGTGA 1152
|||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 719 CTGGTAGTCTTTTATACAGAGTAATAGATGACGACGACCACCGTGCAAGTAGACTCGTGA 778
Query 1153 GTTTCAAAGATGAACCTACTTGTTCCATGTTTCCTACTAATGAGCAAAACAGCAGCAGAA 1212
|||||||||||||||||||||| || ||||||||| ||| || |||||||||||||| ||
Sbjct 779 GTTTCAAAGATGAACCTACTTGCTCTATGTTTCCTGCTATTGGGCAAAACAGCAGCACAA 838
Query 1213 CTTATGAATCTAAACCAGCAATTTATTCCA-CGGAAGTATCCTCCATTTGGGACTTACAT 1271
||||||||||||||||||| ||||||| || ||||||||||||| |||||||||||||||
Sbjct 839 CTTATGAATCTAAACCAGCGATTTATT-CAGCGGAAGTATCCTCTATTTGGGACTTACAT 897
Query 1272 GAGACGGCGGCATCACGCTCTACTCGTGCTCTCTCTCTTCTGTCAGCTCAGTCCCAACAA 1331
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 898 GAGACGGCGGTTTCACGCTCTACTTGTGCTCTCTCTCTTCTGTCAGCTCAGTCCCAACAA 957
Query 1332 CACTTGTCT-AAGTTTCCAAACACAACGTTCTCAATCACCCAACCCAACCAAAATCTCAA 1390
||||||||| || ||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 958 CACTTGTCTCAA-ATTCCAAACACAACGTTCTCAATCACCCAACCAAACCAAAATCCCAA 1016
Query 1391 TCACTCATCATCAACT-GACTATCATCAGATGGAACAACCGTTGTGGATCGATCCTGGCA 1449
|||| ||||| | | | ||||||||||| |||| ||||||| ||||||||||||||||
Sbjct 1017 TCACCCATCA-CCAGTAGACTATCATCAAATGG---AACCGTTCTGGATCGATCCTGGCA 1072
Query 1450 AGACCAATTCTGCTGGTTCTAGTTCTTGTAAAGGAAAAGGAACATCCACGGTTGATCTAC 1509
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1073 AGACCAATTCTGCTGGTTCTAGTTCATGTAAAGGAAAAGGACCATCCACGGTTGATCTAC 1132
Query 1510 TGCAACTGTCATCACATCTTCAAAGAATCGAGCAACAGAGGAATTACACTGGTGATGTGA 1569
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 TGCAACTCTCATCACATCTTCAAAGAATCGAGCAACAGAGGAATTACACTGGTGATGTGA 1192
Query 1570 AGCAGGAATATAATGAGCTTTATTTCCCTGGCTCCTAA 1607
|||||||||||||||||||||||||||||||||| |||
Sbjct 1193 AGCAGGAATATAATGAGCTTTATTTCCCTGGCTCTTAA 1230
> Ahg935081 jgi|Araly1|935081|scaffold_403069.1
Length=1134
Score = 87.9 bits (47), Expect = 2e-16
Identities = 105/132 (80%), Gaps = 8/132 (6%)
Strand=Plus/Plus
Query 852 GTCATAGTTAATGGTCTTGAACAGAGGTTTTGTCAACAGTGCAGCAGGTTTCATT-TCCT 910
||||| ||| |||| | |||||||||||||||||||||||||||||||||||| || |
Sbjct 330 GTCATTGTTTCTGGTATCGAACAGAGGTTTTGTCAACAGTGCAGCAGGTTTCATCATCTT 389
Query 911 CTCAGAGTTTGA--T-GATGGCAAAAGAAGTTGCAGAAGGCGATTAGCCGGTCACAATGA 967
| |||||||| | || | ||||| |||||| | ||| || | || ||||| |||||
Sbjct 390 G-CGGAGTTTGACCTAGA-G--AAAAGGAGTTGCCGTAGGAGACTCGCTGGTCATAATGA 445
Query 968 ACGAAGAAGGAA 979
|||| | |||||
Sbjct 446 ACGACGGAGGAA 457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68676711735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5