BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69180.1
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476042 jgi|Araly1|476042|fgenesh2_kg.2__1172__AT1G69180.1 1461 0.0
> Ahg476042 jgi|Araly1|476042|fgenesh2_kg.2__1172__AT1G69180.1
Length=931
Score = 1461 bits (791), Expect = 0.0
Identities = 891/938 (95%), Gaps = 12/938 (1%)
Strand=Plus/Plus
Query 1 ATAAATACAAGCCTCCTAACTCATAAAATAAGCATAACCCTAACTCTACAAAGttcttct 60
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATAAATACAAGCCTTCTAACTCATAAAATAACCATAACCCTAACTCTACAAAGTTCTTCT 60
Query 61 gattctttctctctctctctttctttcAAGAGCGGTTTTCAATCCATTCGCTAAAGACCA 120
||||| || | |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 GATTC-TT-TATCTCTCTCTTTCTTTCAAGAGCGGTTTTCAATCCATTCGCTAAAGATCA 118
Query 121 TGAACCTAGAAGAGAAACCAACCATGACGGCTTCAAGGGCTTCCCCTCAAGCCGAACATC 180
||||||| |||||||||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct 119 TGAACCTTGAAGAGAAACCAACCATGGCAGCTTCAAGGGCTTCCCCTCAAACCGAACATC 178
Query 181 TCTACTACGTCCGGTGTAGCATCTGCAACACCATCCTCGCGGTTGGGATACCATTGAAGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TCTACTACGTCCGGTGTAGCATCTGCAACACCATCCTCGCGGTTGGGATACCATTGAAGA 238
Query 241 GAATGCTTGACACGGTAACGGTGAAATGCGGCCATTGTGGTAACCTCTCGTTTCTCACCA 300
||||||||||||| || || ||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 239 GAATGCTTGACACTGTGACAGTGAAATGCGGACATTGCGGTAACCTCTCGTTTCTGACCA 298
Query 301 CAACTCCTCCTCTTCAAGGCCATGTTAGCCTCACCCTTCAGATGCAGAGCTTTGGTGGAA 360
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 299 CAACTCCTCCTCTCCAAGGCCATGTCAGCCTCACCCTTCAGATGCAGAGCTTTGGTGGGA 358
Query 361 GTGACTATAAGAAGGGAAGCTCTTCTTCTTCCTCTTCCTCCACCTCCAGCGACCAGCCCC 420
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 359 GTGAGTATAAGAAGGGAAGCTCTTCTTCTTCCTCTTCCTCTACCTCCAGCGACCAGCCAC 418
Query 421 CATCTCCCTCACCTCCCTTTGTCGTCAAACCTCCTGAGAAGAAGCAGAGGCTCCCATCTG 480
|||| ||| |||| ||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 419 CATCCCCCACACCACCCTTTGTCGTTAAACCTCCTGAGAAGAAGCAGAGACTTCCATCTG 478
Query 481 CATACAACCGCTTCATGAGGGATGAGATCCAACGCATCAAAAGTGCCAATCCGGAAATAC 540
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 479 CATACAACCGCTTCATGAGGGATGAGATCCAACGAATCAAAAGTGCTAATCCGGAAATAC 538
Query 541 CACACCGTGAAGCTTTCAGTGCTGCTGCCAAAAATTGGGCTAAGTACATACCCAACTCTC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CACACCGTGAAGCTTTCAGTGCTGCTGCCAAAAATTGGGCTAAGTACATACCCAACTCTC 598
Query 601 CTACTTCCATTACTTCCGGAGGCCACAACATGATCCATGGCTTGGGATTCGGTGAGAAGA 660
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 599 CTACTTCCATTACTTCCGGAGGCCACAACATGATCCATGGCTTGGGGTTCGGTGAGAAGA 658
Query 661 AGTGAACAAAA----CTCAGGGGAAAAGAAGCCTAAAAATAACAAACGCATGCACGTGTG 716
|||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 659 AGTGAAAAAAAAAATCTCAGGGGAAAAGAAGCC-AAAAATAACAAACGCATGCACGTGTG 717
Query 717 CGAGTGGCTGCGTCGTTTTTCTCATCTTGTGTTGTTCTTCTGTGTAATTTTC-TTATGTA 775
||||||||||||||||||||||||||||||||||||| | || ||||||| |||||||
Sbjct 718 CGAGTGGCTGCGTCGTTTTTCTCATCTTGTGTTGTTCAT--GT--AATTTTCCTTATGTA 773
Query 776 TGTCATGTTGCAGAAAATGATGTTGCCTTAGTTTTTATGACTTTATATTTCTGTCTGTCT 835
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 774 TGTCATGTTGCAGAAAATGATGTTGCCTTAGTTTCTATGACTTTATATTTCTGTCTGTCT 833
Query 836 TTAGATTTGAAAGTAACGTCACTTGCTATGTCCCTTTGGACGTTTATGTCTGGTCTTTAT 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TTAGATTTGAAAGTAACGTCACTTGCTATGTCCCTTTGGACGTTTATGTCTGGTCTTTAT 893
Query 896 TTGTCTTAATCCTATCAAAATTTTATATGCGTATTCCT 933
|||||||||||||||||||| ||||| ||| |||||||
Sbjct 894 TTGTCTTAATCCTATCAAAAATTTATCTGCTTATTCCT 931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34653731553
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5