BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69190.1
Length=1699
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476043 jgi|Araly1|476043|fgenesh2_kg.2__1173__AT1G69190.1 2200 0.0
Ahg945001 jgi|Araly1|945001|scaffold_701230.1 1295 0.0
> Ahg476043 jgi|Araly1|476043|fgenesh2_kg.2__1173__AT1G69190.1
Length=1521
Score = 2200 bits (1191), Expect = 0.0
Identities = 1392/1489 (93%), Gaps = 13/1489 (1%)
Strand=Plus/Plus
Query 126 ATGGATTTCACATCTTTGGAAACAACAACTTTCGAAGAAGTCGTGATAGCTTTGGGAAGC 185
||||||||| |||||||||||||||||||||| |||||||| ||||| ||||| ||||||
Sbjct 1 ATGGATTTCGCATCTTTGGAAACAACAACTTTAGAAGAAGTAGTGATTGCTTTAGGAAGC 60
Query 186 AATGTTGGAAACAGAATGAATAATTTCAAAGAAGCTTTACGATTGATGAAAGACTATGGG 245
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 61 AATGTTGGAAACAGAATGAATAATTTTAGAGAAGCTTTACGATTGATGAAAGACTATGGG 120
Query 246 ATCAGTGTAACCAGACACAGTTGTTTGTACGAAACAGAACCTGTTCATGTGACCGACCAA 305
||| |||||| ||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 ATCTGTGTAATAAGACATAGTTGTTTGTACGAAACAGAACCTGTTCATGTGACCAACCAA 180
Query 306 CCAAGATTTCTCAACGCTGCAATAAGAGGTGTCACAAAGCTCAAACCTCATGAACTCTTG 365
|||||||||||||| ||||||||||||||| |||||||| | |||||||||||||||||
Sbjct 181 CCAAGATTTCTCAATGCTGCAATAAGAGGTACCACAAAGCACGAACCTCATGAACTCTTG 240
Query 366 AACGTTCTCAAGAAAATTGAGAAAGAGATGGGTCGTGAAGAAAATGGTTTAAGGTATGGA 425
||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 241 AACATTCTCAAGAAAATTGAGAAAGAGATGGGTCGTAAAGAGAATGGTTTAAGGTATGGA 300
Query 426 CCAAGACCACTTGACTTGGACATATTGTTCTATGGAAAGCACAAG-ATAATTTCTGATAA 484
|||||||||||||| |||||||||||||||||||| ||||| || |||| |||||||||
Sbjct 301 CCAAGACCACTTGATTTGGACATATTGTTCTATGGGAAGCA-TAGAATAACTTCTGATAA 359
Query 485 ACTTATCATTCCCCATGAGAGAATCTGGGAAAGACCATTTGTTTTAGCACCTTTGGTAGA 544
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 360 ACTCATCATTCCCCATGAGAGAATCTGGGAAAGACCATTTGTATTAGCACCTTTGGTAGA 419
Query 545 TTTGCTTGGAACGGAAGATATTGATAATGATAAAATAGTTGCATATTGGCATTCACTCTC 604
|||||||||||| |||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct 420 TTTGCTTGGAACAGAAGATATTGATAATGATCATATAGTTTCATATTGGCATTCACTCTC 479
Query 605 AATGCATTCAGGTGGAATTTTCCAAGCGTGGGAGCGGTTAGGTGGTGAGTCATTGCTTGG 664
||| ||| |||||||| |||| |||||||||||||||||||||||||| ||||||||||
Sbjct 480 AATCCATCCAGGTGGAGTTTTTCAAGCGTGGGAGCGGTTAGGTGGTGAATCATTGCTTGC 539
Query 665 AAAAGACGGTATTATACAAAGGGTTATACCAATAGGAGATCATTTATGGGATTTTTCTAA 724
||||| ||| ||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 540 AAAAGGCGG---TATACAAAGGGTTGTACCAATAGGAGATGATTTATGGGATTTTTCTAA 596
Query 725 GAAAACTTATGTGATGGGTATACTTAATCTTACTCCTGATAGCTTTAGTGATGGAGGTAA 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GAAAACTTATGTGATGGGTATACTTAATCTTACTCCTGATAGCTTTAGTGATGGAGGTAA 656
Query 785 GTTTCAATCGGTAGATACCGCGGTTTCTCGGGTCCGGTCT-ATGATATCTGAAGGTGTAG 843
||||||||| ||||| | |||||||||| ||||| | | ||||| ||||||||||| |
Sbjct 657 GTTTCAATCTATAGATTCAGCGGTTTCTCAAGTCCGCT-TGATGATCTCTGAAGGTGTCG 715
Query 844 ATATTATTGATATCGGTGCACAGTCAACACGGCCGATGGCCTCAAGAATATCTAGTCAAG 903
|||||||||||||||||||||||||||| ||||| |||||||||||||| |||| |||||
Sbjct 716 ATATTATTGATATCGGTGCACAGTCAACGCGGCCAATGGCCTCAAGAATTTCTACTCAAG 775
Query 904 AAGAGATAGATAGACTGATTCCGGTTTTAAAAGTTGTTCGCGGTATGGCAGAGATGAAGG 963
|||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 776 AAGAGATAGATAGACTAATTCCGGTTTTAAAAGTTGTTCGAGGTATGGCTGAGATGAAAG 835
Query 964 GAAAGCTCATATCAGTGGACACTTTTAACTCTGAGGTTGCTTTAGAAGCAATAAGAAATG 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GAAAGCTCATATCAGTGGACACTTTTAACTCTGAGGTTGCTTTAGAAGCAATAAGAAATG 895
Query 1024 GAGCTGACATTTTGAATGATGTATCCGGAGGAAGTTTAGACGAGAACATGCATAAGGTTG 1083
|||||||||||||||||||||| || ||||||||||||||| ||||||||||| ||||
Sbjct 896 GAGCTGACATTTTGAATGATGTCTCTGGAGGAAGTTTAGACCCGAACATGCATATGGTTA 955
Query 1084 TTGCGGATTCTGATGTTCCTTATATGATCATGCACATGAGAGGAGATCCATGTACAATGC 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TTGCGGATTCTGATGTTCCTTATATGATCATGCACATGAGAGGAGATCCATGTACAATGC 1015
Query 1144 AAAACAAAGAGAATTTGGAGTATAATGAAATATGCAAAGATGTTGCCACAGAGCTTTATG 1203
|||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||
Sbjct 1016 AAAACAAAGAGAATTTGGAGTATAATGATATATGCAAAGATGTTGCTTCGGAGCTTTATG 1075
Query 1204 AGAGAGTAAGAGAAGCAGAACTCTCTGGGATTCCAGCTTGGAGGATTATGATTGATCCAG 1263
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 AGAGAGTAAGAGAGGCAGAACTCTCTGGGATTCCAGCTTGGAGGATTATGATTGATCCAG 1135
Query 1264 GAATTGGATTTTCTAAGGGAATAGATCATAATTTAGATATTGTCATGGAGCTACCAAAAA 1323
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1136 GAATTGGATTTTCTAAGGGAATAGCTCATAATTTAGAAATTGTCATGGAGCTACCAAAAA 1195
Query 1324 TCAGGGAAGAGATGGCTAAGAAGAGTATAGGATTGTCTCATGCACCTATACTTATAGGAC 1383
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1196 TCAGGGAAGAGATGGGTAAGAAGAGTATAGGTTTGTCTCATGCACCTATACTTATAGGAC 1255
Query 1384 CTTCAAGGAAGAGATTTTTGGGAGATATTTGTGGTCGTCCTGAGGCAAGTGAAAGAGATG 1443
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 CCTCAAGGAAAAGATTTTTGGGAGATATTTGTGGTCGTCCTGAGGCAAGTGAAAGAGATC 1315
Query 1444 CTGCAACTGTTGCTTGTGTTACTGCTGGGATACTAAAAGGTGCTAATATCATTAGAGTTC 1503
||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||
Sbjct 1316 CTGCAACTGTTGCTTGTGTTACTGCAGGGATATTAAAAGGTGCTACTATCATTAGAGTTC 1375
Query 1504 ATAATGTTAGAGATAATGTAGACGCGGCAAGGCTATGCGATGCAATGATGACGAAAA--G 1561
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1376 ATAATGTTAGAGATAATGTAGACGCGGCAAGGCTATGCGATGCAATGATGAAGAAAAAAG 1435
Query 1562 GTTCAAAAATGTT-GATTAGTTGATATGATTTGTTGTATGGTTTTAAGA 1609
| |||||| || ||||||| ||||||||||| | ||||| ||||||
Sbjct 1436 GGTCAAAA-TGGACGATTAGT--ATATGATTTGTAGCATGGTATTAAGA 1481
> Ahg945001 jgi|Araly1|945001|scaffold_701230.1
Length=1683
Score = 1295 bits (701), Expect = 0.0
Identities = 1190/1424 (84%), Gaps = 42/1424 (3%)
Strand=Plus/Plus
Query 162 GAAGTCGTGATAGCTTTGGGAAGCAATGTTGGAAACAGAATGAATAATTTCAAAGAAGCT 221
||||| ||||| ||||| ||||| || |||||||| | ||||||||||||| |||||||
Sbjct 260 GAAGTTGTGATTGCTTTAGGAAGTAACATTGGAAACCGGATGAATAATTTCAGAGAAGCT 319
Query 222 TTACGATTGATGAAAGAC-T-ATGGGATCAGTGTAACCAGACACAGTTGTTTGTACGAAA 279
|| ||||||||| ||| | | ||| || |||||||||| ||||||||||| |||||||
Sbjct 320 TTGCGATTGATG-AAG-CGTGGTGGCATTTGTGTAACCAGGCACAGTTGTTTATACGAAA 377
Query 280 CAGAACCTGTTCATGTGACCGACCAACCAAGATTTCTCAACGCTGCAATAAGAGGTGTCA 339
| | |||||||||||||| |||||||| || |||||||| |||||| | |||||||| |
Sbjct 378 CGGCTCCTGTTCATGTGACTGACCAACCCAGGTTTCTCAATGCTGCAGTGAGAGGTGTTA 437
Query 340 CAAAGCTCAAACCTCATGAACTCTTGAACGTTCTCAAGAAAATTGAGAAAGAGATGGGTC 399
| ||||| |||||||||||| |||| |||||||||| ||||||||||| ||||| |
Sbjct 438 CTAAGCTTGGACCTCATGAACTATTGAGTGTTCTCAAGACTATTGAGAAAGACATGGGAC 497
Query 400 GTGAAGAAAATGGT-TTAAGGTATGGACCAAGACCACTTGACTTGGACATATTGTTCTAT 458
||| || ||||| || |||||||||||||||||||||| |||||||||||||||||
Sbjct 498 GTG-AG--GATGGTATT-CGGTATGGACCAAGACCACTTGATTTGGACATATTGTTCTAC 553
Query 459 GGAAAGCACAAG-ATAATTTCTGATAAACTTATCATTCCCCATGAGAGAATCTGGGAAAG 517
|| ||| | || |||| ||||||||| || ||||| || ||||||||| ||||||| ||
Sbjct 554 GGCAAG-ATGAGAATAAGTTCTGATAAGCTGATCATACCACATGAGAGACTCTGGGAGAG 612
Query 518 ACCATTTGTTTTAGCACCTTTGGTAGATTTGCTTGGAACGGAAGATATTGATAATGATAA 577
||||||| |||||||||||||| |||||||||||| | || | |||||||||||
Sbjct 613 GTCATTTGTGTTAGCACCTTTGGTTGATTTGCTTGGATC---AGCTGTTGATAATGAT-- 667
Query 578 AATAGTTGCAT-ATTGGCATTCACTCTCAATGCATTCAGGTGGAATTTTCCAAGCGTGGG 636
| |||||| | |||||||||| ||| | || ||| | ||||||||||||||||||||||
Sbjct 668 -ACAGTTGC-TCATTGGCATTCGCTCGCGATACATCCTGGTGGAATTTTCCAAGCGTGGG 725
Query 637 AGCGGTTAGGTGGTGAGTCATTGCTTGGAAAAGACGGTATTATACAAAGGGTTATACCAA 696
|| | | ||||| || ||| || ||||| |||| || ||||||||||||| ||||||
Sbjct 726 AGAGACTGGGTGGCGAATCACTGATTGGACAAGATGG---TATACAAAGGGTTTTACCAA 782
Query 697 TAGGAGATCATTTATGGGATTTTTCTAAGAAAACTTATGTGATGGGTATACTTAATCTTA 756
|||||||| | | |||||||||||||| |||||| |||| |||||||||||||||||||
Sbjct 783 TAGGAGATAAGCTGTGGGATTTTTCTAACAAAACTCATGTAATGGGTATACTTAATCTTA 842
Query 757 CTCCTGATAGCTTTAGTGATGGA-GGTAAGTTTCAATCGGTAGATACCGCGGTTTCTCGG 815
|||| || |||||||| |||||| || || |||||||| ||||| | || |||||||||
Sbjct 843 CTCCCGACAGCTTTAGCGATGGAGGGCAA-TTTCAATCAATAGATTCTGCAGTTTCTCGG 901
Query 816 GTCCGGTCTATGATATCTGAAGGTGTAGATATTATTGATATCGGTGCACAGTCAACACGG 875
|| || || ||||| ||||| |||| |||||| |||||||| || |||||||| |||||
Sbjct 902 GTTCGCTCAATGATCTCTGATGGTGCAGATATAATTGATATTGGAGCACAGTCCACACGC 961
Query 876 CCGATGGCCTCAAGAATATCTAGTCAAGAAGAGATAGATAGACTGA-TTCCGGTTTTAAA 934
|| |||||||||||||| ||||||||||||||| |||||||||| | | || |||||| |
Sbjct 962 CCAATGGCCTCAAGAATTTCTAGTCAAGAAGAGTTAGATAGACT-ACTACCAGTTTTAGA 1020
Query 935 AGTTGTTCGCGGTATGGCAGAGATGAAGGGAAAGCTCATATCAGTGGACACTTTTAACTC 994
| |||||| |||||| |||||||| ||| |||||||||||| ||||||||||| |||||
Sbjct 1021 GGCTGTTCGTGGTATGCCAGAGATGGAGGAAAAGCTCATATCCGTGGACACTTTCAACTC 1080
Query 995 TGAGGTTGCTTTAGAAGCAATAAGAAATGGAGCTGACATTTTGAATGATGTATCCG-GAG 1053
||||||||||| |||||||||||| ||||||||||||||| | ||||||||||| | | |
Sbjct 1081 TGAGGTTGCTTCAGAAGCAATAAGCAATGGAGCTGACATTCTAAATGATGTATCTGCG-G 1139
Query 1054 GAAGTTTAGACGAGAACATGCATAAGGTTGTTGCGGATTCTGATGTTCCTTATATGATCA 1113
||| |||||| ||| |||||| |||||||||| || |||| |||||||| ||| ||
Sbjct 1140 GAACCTTAGACCCGAATATGCATGAGGTTGTTGCAGAATCTGGGGTTCCTTACATGGCCA 1199
Query 1114 TGCACATGAGAGGAGATCCATGTACAATGCAAAACAAAGAGAATTTGGAGTATAATGAAA 1173
||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||| |
Sbjct 1200 TGCACATGAGAGGAGATCCATGTACAATGCAGAACAAAGAGAATTTGCAGTACGATGATA 1259
Query 1174 TATGCAAAGATGTTGCCACAGAGCTTTA-TGAGAGAGTAAGAGAAGCAGAACTCTCTGGG 1232
| ||||| |||||||| | || || || | |||||| ||||| || ||||||||||||
Sbjct 1260 TCTGCAAGGATGTTGCTTCTGAACTCTACTT-GAGAGTGAGAGATGCGGAACTCTCTGGG 1318
Query 1233 ATTCCAGCTTGGAGGATTATGATTGATCCAGGAATTGGATTTTCTAAGGGAAT--AGATC 1290
||||||||||||||| ||||||| |||||||| ||||| ||||| ||| ||| |||||
Sbjct 1319 ATTCCAGCTTGGAGGGTTATGATCGATCCAGGGATTGGGTTTTCCAAG--AATGTAGATC 1376
Query 1291 ATAATTTAGATATTGTCATGGAGCTACCAAAAATCAGGGAAGAGATGGCTAAGAAGA-GT 1349
||||| |||||||| | ||||| || ||||||||| | |||||||||||||||| || ||
Sbjct 1377 ATAATCTAGATATTATTATGGATCTGCCAAAAATCCGAGAAGAGATGGCTAAGA-GAAGT 1435
Query 1350 ATAGGATTGTCTCATGCACCTATACTTATAGGACCTTCAAGGAAGAGATTTTTGGGAGAT 1409
|||| | |||||||||| |||||||| |||||||||||||||||||| ||| ||||||||
Sbjct 1436 ATAGCAGTGTCTCATGCGCCTATACTCATAGGACCTTCAAGGAAGAGGTTTCTGGGAGAT 1495
Query 1410 ATTTGTGGTCGTCCTGAGGCAAGTGAAAGAGATGCTGCAACTGTTGCTTGTGTTACTGCT 1469
|||||||| ||||||||||| | ||| |||||||||||||||||||||| ||||||||
Sbjct 1496 ATTTGTGGGCGTCCTGAGGCCACTGACAGAGATGCTGCAACTGTTGCTTCAGTTACTGCA 1555
Query 1470 GGGATACTAAAAGGTGCTAATATCATTAGAGTTCATAATGTTAGAGATAATGTAGACGCG 1529
|| || || |||||| |||||||||||||||||| |||||||| |||| | ||||||
Sbjct 1556 GGCATTTTAGGAGGTGCCAATATCATTAGAGTTCATGATGTTAGACATAACGCAGACGCA 1615
Query 1530 GC-AAGGCTATGCGATGCAATGAT--GACGAA-AAGGTTCAAAA 1569
|| || ||||||| |||||| | || ||| ||||| |||||
Sbjct 1616 GCTAAAT-TATGCGACGCAATGCTAAGAAGAAGAAGGT-CAAAA 1657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63724979885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5