BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69220.1
Length=2772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315930 jgi|Araly1|315930|fgenesh1_pm.C_scaffold_2000963 2931 0.0
> Ahg315930 jgi|Araly1|315930|fgenesh1_pm.C_scaffold_2000963
Length=3456
Score = 2931 bits (1587), Expect = 0.0
Identities = 1707/1766 (97%), Gaps = 3/1766 (0%)
Strand=Plus/Plus
Query 53 ATGGATCATAACTCGCCGAAATCTCGTCGGAGCCGGAAACCGGAGCCCAAACCTGACATA 112
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGATCATAACTCGCCGAGATCTCGTCGGAGCCGGAAACCGGAGCCCAAACCCGACATA 60
Query 113 TACTCCACTTTCGTAGTCCACTCCGACTCTGATTCTGATCAAGGTCGAGATCGAGACAAA 172
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||
Sbjct 61 TACTCCACTTTCGTAGTCCACTCCGACTCCGATTCTGATCAAGGTCGAAATCGAGATAAA 120
Query 173 CGTAAAGCCAAACCTGAGGAAGACGAAAATGTCGATTTATACGCTACAATGGTCTACAAA 232
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 121 CGTAAAGCCAAACCTGAGGAAGACGAAAATGTCGATTTATACGCTACAATGGTTTATAAA 180
Query 233 GGCGATAGTGACGGAGAAGGAGAGGAAGATGATGATGACGATTCTATGCTTCCTCCTCTT 292
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 181 GGCGATAGTGACGGAGAAGGAGAGGAAGACGATGAAGACGATTCTATGCTTCCTCCTCTT 240
Query 293 CTCAAGCGTCTTCCCAAGGATTTCGGAGGCGGCGCGTCGCTCGATTACGACGACGACGAC 352
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCAAGCGTCTTCCCAAAGATTTCGGAGGCGGCGCGTCGCTCGATTACGACGACGACGAC 300
Query 353 GGTGATGAATCTGGAGATTTCGGTACGATGATTGTGAAAACAGATCGGAGTAGTCATAGT 412
||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGTGACGAAACCGGAGATTTCGGTACGATGATTGTGAAAACAGATCGGAGTAGTCATAGT 360
Query 413 AAGAAGAACAGTCCGTACTCGTCCAAACCGCGAATGGGAGTTAGTCCTAGGAGGAGAGCG 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ---AAGAACAGTCCGTACTCGTCCAAACCGCGAATGGGAGTTAGTCCTAGGAGGAGAGCG 417
Query 473 AGAGGCGGAGATGAGGAATCTTCTGATGAAGAAGACGAAGAAGAAGATGATGATGACGAC 532
||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||
Sbjct 418 AGAGGTGGAGATGAGGAATCTTCCGATGAGGAAGACGAAGAAGAAGAAGATGATGATGAT 477
Query 533 GACGGAGACTACGGTACGTTTGTTGTGAAATCTAAGGATAAAAAGGGAAAGAAGAAAGAC 592
|||||||| |||||||||||||||||||||||| | ||||||||||||||| |||||
Sbjct 478 GACGGAGAGTACGGTACGTTTGTTGTGAAATCTTCGTCTAAAAAGGGAAAGAATAAAGAG 537
Query 593 AAGGAGATTGATATGACAACTATGGGAAGAGCTGTTGCGAGTATGCAGAAATCAAATTTT 652
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AAGGAGATTGATATGTCAACTATGGGAAGAGCTGTTGCGAGTATGCAGAAATCAAATTTT 597
Query 653 GGTGGTAAGACTCGGAAATTGGATCCTTCCTCTTCTTCTTCGAAACTTCACGGTGAAGAT 712
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 598 GGTGGTAAGACTCGGAAATTGGATCCTTCCTCTTCTTCTTCCAAGCTTCACGGTGAAGAT 657
Query 713 AATCGGAAAATGCAGCAGCAAAACAGTAAGATGTCGACTACGTCTCTTCCGGATAGCATT 772
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 658 AATCGGAAAATGCAGCAGCAGAACAGTAAGATGTCGACTACGTCTCTTCCGGATAGCATT 717
Query 773 ACTAGAGAAGATCCAACCACCAAATACGAATTCCTCAATGAACTTGGGAAAGGATCATAT 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ACTAGAGAAGATCCAACCACCAAATACGAATTCCTCAATGAACTTGGGAAAGGATCATAT 777
Query 833 GGATCTGTATACAAGGCAAGAGATTTGAAAACATCAGAGATTGTTGCTGTGAAAGTCATA 892
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 778 GGATCTGTATACAAGGCAAGAGATTTGAAAACATCGGAGATTGTTGCTGTGAAAGTCATA 837
Query 893 TCACTTACTGAAGGGGAGGAGGGGTATGAAGAGATCCGGGGAGAAATTGAGATGCTGCAG 952
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 838 TCACTTACTGAAGGGGAGGAGGGATATGAAGAGATCCGGGGAGAAATTGAGATGCTGCAG 897
Query 953 CAATGTAATCATCCTAATGTTGTCCGCTACCTAGGGAGTTACCAAGGAGAAGATTATCTT 1012
|||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 898 CAATGTAACCATCCGAATGTTGTCCGCTACCTTGGGAGTTACCAAGGAGAAGATTATCTT 957
Query 1013 TGGATAGTGATGGAGTATTGTGGAGGTGGAAGTGTTGCTGATCTTATGAATGTTACTGAG 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TGGATAGTGATGGAGTATTGTGGAGGTGGAAGTGTTGCTGATCTTATGAATGTTACTGAG 1017
Query 1073 GAGGCGTTAGAGGAGTATCAGATAGCATATATATGTCGGGAGGCGTTGAAGGGCCTTGCA 1132
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GAGGCGTTGGAGGAGTATCAGATAGCATATATATGTCGGGAGGCGTTGAAGGGCCTTGCA 1077
Query 1133 TACTTGCACTCAATATATAAAGTCCATAGAGACATTAAAGGTGGAAATATCTTGTTAACT 1192
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TACTTGCACTCAATTTATAAAGTCCATAGAGACATTAAAGGTGGAAATATCTTGTTAACT 1137
Query 1193 GAACAAGGAGAGGTCAAGTTGGGTGACTTTGGGGTTGCAGCTCAACTTACTCGCACTATG 1252
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1138 GAACAAGGAGAGGTCAAGTTGGGTGACTTTGGGGTTGCAGCTCAACTTACGCGGACTATG 1197
Query 1253 TCGAAGCGAAACACGTTCATTGGGACTCCACATTGGATGGCCCCAGAGGTTATTCAGGAA 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TCGAAGCGAAACACGTTCATTGGGACTCCACATTGGATGGCCCCAGAGGTTATTCAGGAA 1257
Query 1313 AATCGTTATGATGGGAAGGTTGATGTATGGGCTCTTGGTGTTTCAGCTATTGAGATGGCA 1372
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1258 AATCGTTATGATGGGAAGGTGGATGTATGGGCTCTTGGTGTTTCAGCTATTGAGATGGCA 1317
Query 1373 GAGGGGCTCCCTCCAAGATCATCAGTTCATCCGATGAGGGTTTTGTTCATGATATCCATC 1432
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GAGGGGCTTCCTCCAAGATCAGCAGTTCATCCGATGAGGGTTTTGTTCATGATATCCATC 1377
Query 1433 GAGCCAGCTCCAATGCTCGAGGATAAAGAAAAATGGTCCCTGGTCTTTCATGATTTTGTT 1492
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GAGCCAGCTCCGATGCTCGAGGATAAAGAAAAATGGTCCCTGGTCTTTCATGATTTTGTT 1437
Query 1493 GCAAAGTGCCTCACAAAGGAACCACGTCTTCGCCCAACTGCAGCTGAGATGCTTAAGCAC 1552
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 GCAAAGTGCCTTACAAAGGAACCACGTCTTCGCCCAACTGCAGCTGAGATGCTTAAGCAC 1497
Query 1553 AAATTTGTTGAGAGATGTAAAACTGGGGCTTCTGCAATGTCGCCAAAGATTGAGAAGTCC 1612
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1498 AAATTTGTTGAGAGATGTAAAACTGGGGCTTCCGCAATGTCGCCAAAGATTGAGAAGTCC 1557
Query 1613 AGACAAATCAGAGCTACAATGGCTCTGCAAGCGCAAAGTGTTGTCGCACCTTCTTTGGAG 1672
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1558 AGACAAATCAGAGCTGTAATGGCTCTGCAAGCGCAAAGTGTTGTCGCACCTTCTTCGGAG 1617
Query 1673 GACACTTCAACACTGGGTCCAAAATCAAGCGAGGAGCTTGGAATTACTGTTCCATCTAAA 1732
|||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||
Sbjct 1618 GACACTTCAACACTGGGTCCAAAATCAAATGAAGAGGTAGGAATTACTGTTCCATCTAAA 1677
Query 1733 CCTCCTCAAAATTCGACCGAAGCACCTCTAACCAGCACCCTGAATCGGCAGCATATTACT 1792
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1678 CCTCCTCAAAATTCCACCGAAGCACCTCTAACCGGCACCCTGAATCGGCAGCATATAACT 1737
Query 1793 GGCAACACTGTGTTGGCTGGAGAAGG 1818
||||||||||||||||||||||||||
Sbjct 1738 GGCAACACTGTGTTGGCTGGAGAAGG 1763
Score = 1177 bits (637), Expect = 0.0
Identities = 716/753 (95%), Gaps = 10/753 (1%)
Strand=Plus/Plus
Query 1818 GTGGTGACTTCGGAACTATGATCGTTCATGGTGAGGATGAGACAGAGGAGAGTGACTCCA 1877
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1790 GTGGTGACTTTGGAACTATGATCGTTCATGGTGAGGATGAGGCAGAGGAGAGTGACTCCA 1849
Query 1878 GGTCTCAGCTTGTC--AGAGAAA-AAGAATCTTCATCTTCTCAGTTTGAAGGTGTTCCTC 1934
||||||| |||||| ||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 1850 GGTCTCAACTTGTCAAAGAGAAAGAAGAATCTTCATCTTCTCAGGTTGAAGGTGTTTCTC 1909
Query 1935 GCGAATTCCCAGGAGAAGAATTACCTGACTCATGGATACATGACAAAAAGAAGCCTCCGG 1994
||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1910 GCGAAGTCTCAGGAGAAGAATTACCTGACTCATGGATACATGACAAAAAGAATCCTCCGG 1969
Query 1995 CTATTGATCTTCCAGTTGAAGCTTCGATTTCACAGAGCATGCAGGCAAGTTCATCTCATG 2054
||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1970 CTACCGATCTTCCAGTTGAAGCTTCGACTTCACAGAGTATGCAGGCAAGTTCATCTCATG 2029
Query 2055 AGCATAGAACCAAGCTACATAACATAGCTGGAACACAGATGGAAGGTGGCAGTGATGCAA 2114
||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||
Sbjct 2030 AGCATAGAACCAAGCTAAATAACATAGCTGGAATACAGACCGAAGGTGGCAGTGATGCAA 2089
Query 2115 GTGGTAGTACCTTGAAAAATGAAACTGTTGGCAGGAAAGCTTTTGCTTTGCAAGATAAGT 2174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2090 GTGGTAGTACCTTGAAAAATGAAACTGTTGGCAGGAAAGCTTTTGCTTTGCAAGATAAGT 2149
Query 2175 TATGGTCAATCTACGCAGCTGGAAACACAGTACCGATACCGTTCTTGAGAGCAACAGATA 2234
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 2150 TATGGTCAATCTACGCAGCTGGAAACACAGTACCTATACCATTCTTGAGAGCAACAGATA 2209
Query 2235 TATCCCCAATCGCACTCTTGTCAGAGAACATGATCGGAGGCATGCAACAAGATGGGAATG 2294
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2210 TATCCCCAATTGCACTCTTGTCAGAGAACATGATCGGAGGCATGCAACAAGATGGGAATG 2269
Query 2295 GAACTGTAGCCGTCGAAGCACTTCAGGAGCTCTTCACTTCTTCTGATCCCCAATCCAAAA 2354
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 2270 GAACTGTAGCCGTCGAAGCACTTCAGGAGCTCTTCACTTCT---GATCCCCAATCCAGAA 2326
Query 2355 AGGGCCGACGTGGACAAAACGAGATGCCTCTTCCTCCAAGCGTATACCAAAGACTGACAA 2414
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2327 AGGGTCGACGTGGACAAAACGAGATGCCTCTTCCTCCAAGCGTATACCAAAGACTGACAA 2386
Query 2415 CAAGCTCTTCTCTGATGAACCTTGCACAAGTTTTAGCCTACCACAGAGCGT--GT-T-AC 2470
||||||||||||| ||||| ||||||||||||||||| ||||||||||||| || | ||
Sbjct 2387 CAAGCTCTTCTCTAATGAATCTTGCACAAGTTTTAGCATACCACAGAGCGTACGTGTTAC 2446
Query 2471 GAGGAAATGCCGCTGCAGGAATTGCAAGCAACGCAGGAGCAGCAAACCATTCAGAATCTG 2530
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2447 GAGGAAATGCCGCTGCAGGAATTGCAAGCAACGCAGGAGCAGCAAACCATTCAAAATCTA 2506
Query 2531 TGCGATACTCTTCGCACTATTCTCCGCCTCTAA 2563
|||||||||||||||||||| ||||||||||||
Sbjct 2507 TGCGATACTCTTCGCACTATCCTCCGCCTCTAA 2539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104595812770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5