BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69230.1
Length=617
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476049 jgi|Araly1|476049|fgenesh2_kg.2__1179__AT1G69230.1 675 0.0
> Ahg476049 jgi|Araly1|476049|fgenesh2_kg.2__1179__AT1G69230.1
Length=545
Score = 675 bits (365), Expect = 0.0
Identities = 480/532 (90%), Gaps = 21/532 (4%)
Strand=Plus/Plus
Query 49 CTTGCTGATCAGCTAAAGTA-CATTTGAGAGAAGCAAGAGAGATAGAATGGGGCGTGGAG 107
|||||||||||||||||| | | ||||||||||||||||||||||||||||| |||||||
Sbjct 23 CTTGCTGATCAGCTAAAGAATC-TTTGAGAGAAGCAAGAGAGATAGAATGGGTCGTGGAG 81
Query 108 TTAGTGCAGGTGGAGGACAAAGTTCTTTGGGATATCTTTTTGGGAGCGGAGAGGCTCCAA 167
||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 82 TTAGTGCCGGTGGAGGGCAGAGTTCTTTGGGATATCTTTTTGGGAGCGGAGAGGCTCCAA 141
Query 168 AGCTAGCAGCCGTTAACAAAACTCCAGCTGAAACTGAGTCTTCTGCTCATGCTCCACCTA 227
||| |||| ||||||||||| ||||||| ||||| |||||||||||| ||||||||||
Sbjct 142 AGCCAGCAACCGTTAACAAAGCTCCAGCCGAAACCCAGTCTTCTGCTCCTGCTCCACCT- 200
Query 228 C-TCAAGCTGCTGCTGCAAACGCTGTTGATAGCATCAAACAAGTTCCTGCTGGTCTCAAT 286
| |||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 201 CTTCAAGCCGCTGCTCCAAAGGCTGTTGATAGCATCAAACAAGTTCCTGCTGGTCTCAAT 260
Query 287 AGCAACTCTGCAAACAATTACATGCGTGCAGAAGGACAAAACACAGGCAATTTCATCACG 346
||||||||| |||| ||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 261 AGCAACTCTACAAATAATTACATGCGTGCAGAAGGACAGAACACAGGCAACTTCATTACG 320
Query 347 GACCGACCATCGACCAAGGTTCACTCAGCTCCAGGAGGTGGCTCGTCTCTTGA-TTACCT 405
||||| ||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 321 GACCGGCCATCGACCAAAGTTCACTCAGCTCCAGGAGGTGGCTCGTCTCT-GAATTACCT 379
Query 406 CTTTGGTGGTGGTAGCAACTAGCTACT-GAGGCCAACTTGGTCACTCTATCTTCTTTATC 464
||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 380 CTTTGGTGGTGGTAGCAACTAGCTATTTGAGGCAAACTTGGTCACTCTATCTTCTTTATC 439
Query 465 CCACGTCACACTTCTATCATTTT-GTGAAACCTCTTG--T-T----CCCTAGCAAAAAAT 516
||| ||||| ||| ||||||||| ||| ||||||||| | | |||||||| || ||
Sbjct 440 CCAAGTCACCCTTGTATCATTTTCGTGGAACCTCTTGCCTCTTGGTCCCTAGCAGAATAT 499
Query 517 AAAATCTGTATAATCTCTAAATTTCTACGCATATGTGCTTCAATTGTTGTAT 568
||||||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct 500 AAAATCTGTATAATCTCTAAATTTCTA----T--GTGATTCAATTGTTGTAT 545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22568766864
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5