BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69240.1
Length=1490
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476051 jgi|Araly1|476051|fgenesh2_kg.2__1181__AT1G69240.1 2254 0.0
Ahg912415 jgi|Araly1|912415|Al_scaffold_0001_2669 974 0.0
> Ahg476051 jgi|Araly1|476051|fgenesh2_kg.2__1181__AT1G69240.1
Length=1423
Score = 2254 bits (1220), Expect = 0.0
Identities = 1345/1406 (96%), Gaps = 6/1406 (0%)
Strand=Plus/Plus
Query 11 aaaaaaaTGGGAAACTCTTTAAGATGCATATCACAAGAACAAGATCCAAACCAGAAGAAA 70
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 AAAAAAATGGGAAACTCTTTAAGATGCATATCGCAAGAACAAGATCCAAACCAGAAGAAA 60
Query 71 CCTAGCTCCGTCGTCAACGGTAATAGCTCCGAGAAACACGTTCGGAGGCTGTCTTTGATA 130
||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||
Sbjct 61 CCTAGCTCCGTCGTCAACGGTAATAGCTCGGAGAAACACGTTCGGAGGCTGTCTCTAATA 120
Query 131 CCATCTTTCCGACGCCGGACATTACTACCATCTCTCTCTTGCTCCGGATCCTCAACTTCG 190
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 CCATCTTTCCGACGCCGGACATTACTTCCATCTCTCTCTTGCTCCGGATCCTCAACTTCG 180
Query 191 TCTACGTCCAAGAAAGGAGGGATCAAGACAAAAAAGAAGATAAGAGAAAGACACCACCAA 250
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 181 TCTACGTCCAAGAAAGGAGGGATCAAGACAAAAAAAAAGATCAGAGAAAGACACCACCAA 240
Query 251 GAGCAACATCATCATGATCATGAGAAAGACTCTCTTATTCAAGACCAAACATTAGCTGCC 310
||| |||||||||||||| |||||||||||||| || ||||| ||||| ||||| |||
Sbjct 241 GAG---CATCATCATGATCACGAGAAAGACTCTCTAATCCAAGAACAAACCTTAGCCGCC 297
Query 311 ACTAATATTCTCTTTAGTCAAACGCCTCGTAACAGCAACTCTGCTCCTCCTTTCCGACGC 370
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ACTAATATCCTCTTTAGCCAAACGCCTCGTAACAGCAACTCTGCTCCTCCTTTCCGACGC 357
Query 371 TCCACCTCCGTCGTTTACACTCAGCCACCTACC-GCCGCTGTAGCCGCCTCCGTAGGTTC 429
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 358 TCCACCTCCGTCGTTTACACTCAGCCACCT-CCTGCCGCTGTAGCCGCCTCCGTAGGTTC 416
Query 430 TGTTTCCGGCGCCTTGACTCCTAAGAAATCCACTTATGGATACGTTAGAAGTTCTAGCAA 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 417 TGTTTCCGGCGCCTTGACTCCTAAGAAATCCACTTATGGATACGTTAGAAGTTCTAGTAA 476
Query 490 TAGGCAGAGATCAAGCACTGATCCTGTTCTTAAACCCAATCAGCTTCTAGACAAGGAGCT 549
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 477 TAGGCAGAGATCAAGCACCGATCCTGTTCTTAAACCCAATCAGCTCCTAGACAAGGAGCT 536
Query 550 AAAGGTCGAAGGTGCGGAGACAAAGCGGTTCGTGCTGGTTCATGGAGGAGGGTTTGGTGC 609
|||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 537 AAAGGTGGAAGGTGCGGAGACGAAGCGGTTCGTCCTGGTTCATGGAGGAGGGTTTGGTGC 596
Query 610 ATGGTGTTGGTACAAAACCATAACGCTCTTAGAGAAACATGGTTTCCAAGTAGACGCCGT 669
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 597 ATGGTGTTGGTACAAAACCATAACGCTCTTAGAGAAACATGGTTTCCAAGTCGACGCCGT 656
Query 670 TGACTTGACCGGTTCCGGTGTCAGCTCTTTTGACACAAACAACATCACTAGCCTCGCTCA 729
||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 657 TGACTTGACTGGTTCTGGTGTCAGCTCTTTCGATACAAACAACATCACTAGCCTCGCTCA 716
Query 730 ATACGTCAAACCACTCCTCCATTTCTTTGACACCCTTAAACCCACCGAGAAGGTGATATT 789
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 717 ATACGTCAAACCCCTCCTCCACTTCTTCGACACCCTTAAACCCACCGAGAAGGTGATATT 776
Query 790 AGTGGGGCATGATTTTGGAGGAGCTTGTATGTCTTATGCCATGGAGATGTACCCTTCTAA 849
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 777 AGTGGGGCATGATTTTGGAGGTGCTTGTATGTCTTATGCCATGGAGATGTACCCTTCTAA 836
Query 850 GATCGCTAAGGCTATTTTCATATCTGCTGCTATGTTGGCTAATGCCCAAAGCACTCTCGA 909
|||| | |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 837 GATCTCGAAGGCTATCTTCATCTCTGCTGCTATGTTGGCTAATGCCCAAAGCACTCTTGA 896
Query 910 TCTCTTTAACCAACAGCCTGACTCAAATTATGATCTGATGGAACAAGTCCATCTATTTCT 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TCTCTTTAACCAACAGCCTGACTCAAATTATGATCTGATGGAACAAGTCCATCTATTTCT 956
Query 970 GTACGCCAACGGCAAAAAGAACCCTCCAACAGCCGTTGATTTCGACAGATCATTGCTTAG 1029
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 957 GTACGCCAACGGAAAAAAGAACCCTCCAACAGCCGTTGATTTCGACAGATCTTTGCTTAG 1016
Query 1030 AGATTTTTTCTTTAATCAGAGCCCTCCAAAGGACGTTGCATTAGCGTCGGTATCGATGAG 1089
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1017 AGACTTTTTCTTTAATCAGAGCCCTCCAAAGGACGTTGCATTAGCGTCGGTATCCATGAG 1076
Query 1090 ACCAATCCCGTTCGCACCAGTGGTCGAAAAGCTCCACGTGTCGGAGAAAAATTACGGTTC 1149
||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1077 ACCGATCCCGTTCGCGCCAGTGGTCGAAAAGCTTCACGTGTCGGAGAAAAACTACGGTTC 1136
Query 1150 AATCCGACGGTTCTACATCAAAACCATGGAGGATGATTACGCTGTACCGGTTTCTCTCCA 1209
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1137 AATCCGAAGGTTCTACATCAAAACCATGGAGGATGATTACGCTGTACCGGTTTCTCTACA 1196
Query 1210 AGATGCAATGATCAAATCAAACCCTCCAGAACAAGTTTTTCATCTCAAAGGCTCTGACCA 1269
|||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||| ||
Sbjct 1197 AGATGCAATGATCAAATCGAATCCTCCTGAACAAGTTTTCCATCTCAAAGGCTCTGATCA 1256
Query 1270 TGCACCTTTCTTCTCTCGTCCTCAGTCTTTGAACCGGATACTCGTTGAGATTTCTCAATT 1329
|||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1257 TGCACCATTCTTCTCTCGTCCTCAGTCTTTGAACCGAATACTCGTCGAGATTTCTCAATT 1316
Query 1330 ACCTCCCAAGAAATCTTCTTGATCAATGTTACCGGTTATGTAAACTGAACCGGACATAGG 1389
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1317 ACCTCCCAAGAAATCTTCTTGATCAATGTTACCGGTTATGTAAACCGAACCGGACATAGG 1376
Query 1390 ATCCTGTAAAACATAAAGTTAGAGAT 1415
|||||||||| || ||||||||||||
Sbjct 1377 ATCCTGTAAA-CAGAAAGTTAGAGAT 1401
> Ahg912415 jgi|Araly1|912415|Al_scaffold_0001_2669
Length=1332
Score = 974 bits (527), Expect = 0.0
Identities = 1014/1237 (82%), Gaps = 82/1237 (7%)
Strand=Plus/Plus
Query 146 CGGACATTACTACCATCTCTCTCTTGCTCCGGATC--C-TCAACTTCGTCTACGTCCAAG 202
||||| |||| || || ||||| ||||| ||||| | || ||| || | ||||||||
Sbjct 133 CGGACGCTACTTCCTTCGCTCTCCTGCTCTGGATCATCATCCACTACG--T-CGTCCAAG 189
Query 203 AAAGGAGGGATC-AAGACAAA-A--AAGAAGATAAGAGAAAGACACCACCAAGAGCAACA 258
||||| |||||| ||| |||| | ||||||||||||| || | | | | || ||
Sbjct 190 AAAGGCGGGATCAAAG-CAAAGACGAAGAAGATAAGAG--AG--A-GA-C---ATCATCA 239
Query 259 TCATCATGATCATGAGAAAGACTCTC-T-T-ATTCAAGACCAAACATTAGCTGCCACTAA 315
|||||| || || || |||||||||| | | ||||| || |||||| |||| ||||||||
Sbjct 240 TCATCAAGACCACGAAAAAGACTCTCATATAATTCAGGAGCAAACACTAGCAGCCACTAA 299
Query 316 TATTCTCTTTAGTCAAACGCCTCGTAACAGCAACTC---TGCTCCTCC---TTTCCGACG 369
| | ||||| | ||||| ||||||| ||||||||| || |||||| |||| ||||
Sbjct 300 TCTCCTCTTCAACCAAACCCCTCGTAGCAGCAACTCTGTTGTTCCTCCTAGTTTCAGACG 359
Query 370 CTCCACCTCCGTCGTTTA-CACTCAGC-CA-CCTACCGCCGCTGTAGCC-GCCTCCGTAG 425
|||||||||||| || || | ||| || || || | || | ||| || | || | ||
Sbjct 360 CTCCACCTCCGTTGTCTATCCCTCGGCTCAGCC-ATCG--G--GTA-CCAG-CT-C--AG 409
Query 426 GTTCTG-TTT-CCGGCGCCTTGACTCCTAAGAAATC-CACTTATGGATACGTTAGAAGTT 482
| ||| ||| ||| || |||||||||||| || || |||| ||| ||||| |
Sbjct 410 GACCTGTTTTAGCGG-TCC-AGACTCCTAAGAAGTCAAAC-GCGGGATTCGTAAGAAGCT 466
Query 483 CTAGCAATAGGCAGAGATCAAGCACTGAT-CC-TGTTCTTAAACCCAATCAGCTTC-TAG 539
||||| ||| || || || || || ||| || || || || || || |||| || | |
Sbjct 467 CTAGCTCTAGACAAAGGTCCAGTACCGATCCCTTGATC--AAGCCTAACCAGC-TCGTTG 523
Query 540 ACAAGGAGCT--A-AAGGTCGAAGGTGCGGAGACAAAGCGGTTCGTGCTGGTTCATGGAG 596
|||||||||| | ||||| |||||| ||||||| ||||||||||||||||||||||| |
Sbjct 524 ACAAGGAGCTAAATAAGGTGGAAGGTTCGGAGACGAAGCGGTTCGTGCTGGTTCATGGTG 583
Query 597 GAGGGTTTGGTGCATGGTGTTGGTACAAAACCATAACGCTCTTAGAGAAACATGGTTTCC 656
| || || || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 GTGGATTCGGAGCATGGTGTTGGTACAAAACCATAACGCTCTTAGAGAAACATGGTTTCC 643
Query 657 AAGTAGACGCCGTTGACTTGACCGGTTCCGGTGTCAGCTCTTTTGACACAAACAACATCA 716
|||| || || ||||||||||||||||| ||||| |||||| ||||||| ||||||||||
Sbjct 644 AAGTCGATGCTGTTGACTTGACCGGTTCAGGTGTGAGCTCTATTGACACCAACAACATCA 703
Query 717 CTAGCCTCGCTCAATACGTCAAA-CCACTCCTCCATTTCTTTGACA-CCCTTAAACCCAC 774
| ||||| ||||| ||| || || || |||||||| |||||||| | |||||||||||||
Sbjct 704 CCAGCCTTGCTCACTAC-TCCAAGCCTCTCCTCCACTTCTTTGA-ATCCCTTAAACCCAC 761
Query 775 CGAGAAGGTGATATTAGTGGGGCATGATTTTGGAGGAGCTTGTATGTCTTATGCCATGGA 834
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 762 CGAGAAGGTGATATTGGTGGGGCATGATTTTGGAGGAGCTTGTATGTCTTATGCTATGGA 821
Query 835 GATGTACCCTTCTAAGATCGCTAAGGCTAT-TTTCATATCTGCTGCTATGTTGGCTAATG 893
|||| |||| |||||||||| || ||| | ||| || ||||||||||||||||||||||
Sbjct 822 AATGTTCCCTACTAAGATCGCCAAAGCTGTCTTT-ATCTCTGCTGCTATGTTGGCTAATG 880
Query 894 CCCAAAGCACTCTCGATCTCTTTAACCAACAGCCTGAC-TCAAATTATGATCTGATGGAA 952
||| |||||||| ||||||||||| |||||| || |||||| ||||||||| ||
Sbjct 881 GCCAGAGCACTCTTGATCTCTTTAATCAACAGG-TGGGGTCAAAT---GATCTGATGCAA 936
Query 953 CAAGTC-CATCTATTTCTGTACGCCAACGGCAAAAAGAACCCTCCAACAGCCGTTGATTT 1011
|||| | || | ||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 937 CAAG-CACAGATCTTTCTATACGCCAACGGCAAAAAGAATCCTCCAACAGCCGTTGATTT 995
Query 1012 CGACAGATCATTGCTTAGAGATTTTTTCTTTAATCAGAGCCCTCCAAAGGACGTTGCATT 1071
||||||||| ||||||||||| ||| |||| ||||| ||||||||||||||| | |||||
Sbjct 996 CGACAGATCTTTGCTTAGAGACTTTCTCTTCAATCAAAGCCCTCCAAAGGACCTCGCATT 1055
Query 1072 AGCGTCGGTATCGATGAGACCAATCCCGTTCGCACCAGTG-GTCGAAAA-GCTCCACGTG 1129
|| |||||||| || ||||| |||||||||||||| || | |||||| | || || ||
Sbjct 1056 GGCCTCGGTATCCATTAGACCGATCCCGTTCGCACCGGTCAG-CGAAAAAGTTC-ACTTG 1113
Query 1130 TCGGAGAAAAATTACGGTTCAATCCGACGGTTCTACATCAAAACCATGGAGGATGATTAC 1189
||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | ||
Sbjct 1114 TCGGAGAAAAACTACGGTTCTATCCGACGGTTCTACATCAAAACCATGGAGGAT--T-AC 1170
Query 1190 GCTGTACCGGTTTCT-CTCCAAGATGCAATGATCAAATCAAACCCTCCAGAACAAGTTTT 1248
|||||||||||| || ||||| || ||||||||||||| |||||| || |||||||||||
Sbjct 1171 GCTGTACCGGTT-CTTCTCCAGGAAGCAATGATCAAATTAAACCCACCGGAACAAGTTTT 1229
Query 1249 TCATCTCAAAGGCTCTGACCATGCACCTTTCTTCTCTCGTCCTCAGTCTTTGAACCGGAT 1308
||| ||||||||||| || || ||||| ||||||||||| ||||| || |||||||| ||
Sbjct 1230 TCAGCTCAAAGGCTCCGATCACGCACCGTTCTTCTCTCGGCCTCAATCCTTGAACCGAAT 1289
Query 1309 ACTCGTTGAGATTTCTCAATTACC-TCCCAAGAAATC 1344
||||| ||||| |||||| |||| | | ||||||||
Sbjct 1290 CCTCGTCGAGATATCTCAAATACCGTTC-AAGAAATC 1325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55764118680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5