BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69250.1
Length=1715
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926218 jgi|Araly1|926218|scaffold_201779.1 1371 0.0
> Ahg926218 jgi|Araly1|926218|scaffold_201779.1
Length=1381
Score = 1371 bits (742), Expect = 0.0
Identities = 1142/1323 (86%), Gaps = 76/1323 (6%)
Strand=Plus/Plus
Query 213 CAGTACGTGTGCAGATATGGCTACCGAGGGAGTTGTTCCTTCAGCGCAGGATATTGCTGC 272
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||
Sbjct 5 CAGTACGTGTGCAGATATGGCTACCGAGGGAGTTGTTCCTTCAGCGAAGGCGATTTCTGC 64
Query 273 TGAATTTGT-GAGACAGTACTATCATGTTTTAGGACA-GCTTCCTCATGAAGCTCGTAGG 330
|| ||||| || |||||||||| |||||||| || | | ||||||||||||||| || |
Sbjct 65 TGCCTTTGTGGA-ACAGTACTATTATGTTTTAAGATATG-TTCCTCATGAAGCTCATAAG 122
Query 331 TTATATGTTGATGCTAGTGTTGTCAGCAGACCTGATGT--T-ACTGGTACTATGATGTCT 387
|||||||||| || ||||||| ||||||||||| | || | | |||||||||| |||||
Sbjct 123 TTATATGTTGCTGATAGTGTTTTCAGCAGACCT-A-GTCCTGA-TGGTACTATGCTGTCT 179
Query 388 TTTACTTCCGTTGAGGCTATCAACAAGCATATCCTGTCCTGTGACTTTGAGAATACTAAA 447
|||||||||||||||||||||||| |||||||||| || |||| |||||||||||| | |
Sbjct 180 TTTACTTCCGTTGAGGCTATCAACGAGCATATCCTTTCATGTGGCTTTGAGAATACGACA 239
Query 448 TTTGAGGTTCTGAGTGTTGACTCTCAGAATTCTTTGGAAGATGGGATTTTTATTATGGTG 507
||||||||||||||| | || ||||||||||||||||| |||||||| |||| |||||
Sbjct 240 TTTGAGGTTCTGAGTATCGATTCTCAGAATTCTTTGGATGATGGGATAATTATCATGGTT 299
Query 508 ATCGGTTTCATGACTGGAAAAGACAACCAGAGGAGGAAGTTTTCTCAGATGTTCTATCTT 567
|| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||
Sbjct 300 ATTGGTTTCATGACTGGAAAAGACAACCTGAGGAGGAAGTTTTCTCAGATATTCTAT-TT 358
Query 568 -GCTCGTCA-AA-ATACCCTCGTTGTTCTCAATGACATGTTACGATACGTTGATCAAGAG 624
|| ||||| || | ||| | ||||| |||||||||||||| ||||| |||||||||||
Sbjct 359 GGCACGTCATAAGA-ACCAT-GTTGTCCTCAATGACATGTTTCGATATGTTGATCAAGAT 416
Query 625 GATT-C-TTCTAC---CACTG--A--AACTCCATGTGAGCCGGTAACTGAGATTGTG-AG 674
|||| | | || | ||| | | ||||||||| | ||||||||||||| ||
Sbjct 417 GATTCCACCCCACAAACTCTGCCAGTTGTTGAATGTGAGCCAGCAACTGAGATTGTGAAG 476
Query 675 ACCAGCTGATG-GTCTAAAGAAGGCCGAGAAGACTGAGCTGAAACAGAAAAACGTTGCTT 733
||||||| || | || || ||||||| ||||||||||||||||||| |||||
Sbjct 477 -CCAGCTGCTGAG-CT----AA-----AGAAGACCGAGCTGAAACAGAAAAACGATGCTT 525
Query 734 CGGTGGAGAAATCTGTTAATGCTGCTGTTGAAAAGAA---TGCTGCTCCATTGGACAACG 790
|||||| || |||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 526 CGGTGGCCAAGTCTGTTAATGCTGCTGTTGAAAAGAATGCTGCTGCTCCATTGGACAATG 585
Query 791 GAAAGATGAAGCAATCTGAAAAAGCTGTTATTACTCAGAAAGTTACAGAGCCA---GATG 847
||||||||||||| |||||||||||||||||| |||| ||| ||||||| | | ||
Sbjct 586 GAAAGATGAAGCAGTCTGAAAAAGCTGTTATTGCTCAAAAACCAACAGAGCAAGTTGCTG 645
Query 848 ---C---TGCTCCTCAGCCCGATGGAGCCAAGAGATCGTTTGCTGAC-ATAGTTGGATCA 900
| ||||||||| || ||||||||||||||||||||||||| | |||||| ||||
Sbjct 646 AAACAGTTGCTCCTCAACCTGATGGAGCCAAGAGATCGTTTGCTG-CGATAGTTCAATCA 704
Query 901 ATGGCGAAA-AACGCTGCTCCGTTTCAAGTTAAATCCCCTGTTCAAGCCCCGGTTCAGAA 959
||||| ||| ||||||||||||||||||| || |||||||||||||| |
Sbjct 705 ATGGC-AAACAACGCTGCTCCGTTTCAAG----------TG--AAAGCCCCGGTTCAGCA 751
Query 960 ACCTAAATACGTGGGACAACCCCGTGCTGCTGCAGCACCTCAAAAACCTGCTTACGTCAG 1019
|||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 752 ACCTAAATACATGGGACAACCACGTGCTGCTGCAGCACCTAAAAAACCTGCTTACGTCAG 811
Query 1020 TAAATCTATAAAGAAAAATGATCAGAAGGTCATTGAAGTACCAGGCACTTCGATATTTGT 1079
|||||||||||||||||||||||||||| ||||||||| |||||||| || ||||||||
Sbjct 812 TAAATCTATAAAGAAAAATGATCAGAAGATCATTGAAGAACCAGGCAAATCTATATTTGT 871
Query 1080 TGCAAATCTGCCATTGAATGCAATGCCGCCTCAACTCTTTGAACTGTTCAAGGATTTTGG 1139
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 872 GGCAAATCTGCCATTGAATGCAATGCCGCCCCAACTCTATGAACTGTTCAAGGATTTTGG 931
Query 1140 TCCTATCAAAGAAAACGGGATTCAAGTCCGAAGCTCCAGGGGTAATGCTAATCCAGTTTG 1199
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 932 TCCTATCAAAGAAAACGGGATTCAAGTCCGAAGCTCCAGGGGCAATGCTAATCCAGTTTG 991
Query 1200 CTTCGGGTTTATCT-CCTTTGAAACTGTTGCCTCAGTCCAGAGCGTGCTTCAGGCTGCCA 1258
|||||||||||| | |||||||| ||| |||||| ||||||||||||||||||||| |||
Sbjct 992 CTTCGGGTTTAT-TGCCTTTGAATCTGCTGCCTCTGTCCAGAGCGTGCTTCAGGCTACCA 1050
Query 1259 AGAACACGCCCTTCATGCTTGCAGACCGTAAGCTTCGTGTAAAGGAAAAAGAAGTTGATT 1318
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 1051 AGAACACGCCCTTCATGCTTGCAGACCGTAAGCTTCGTGTAAAGGAGAAGGAAGTTGACT 1110
Query 1319 ATGATGGAAGCAAACCTTCTGGTAAAACCAAAGGTGGAAGCAACAAGACGCAGAATGGCT 1378
|||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||
Sbjct 1111 ATGATGGAAGCAAACCTTCTGGGAAAACCAAAGGTGGAAGCAACAAGATTCAAAATGGCT 1170
Query 1379 CTGCAGATAGCAGCAAGACTGAGAATGGCTCTGCAGATGACAGCAAGACA-AAT--GGCT 1435
|||||||| ||||||||||||||||| ||||| ||||||||||||||||| || ||||
Sbjct 1171 CTGCAGATGGCAGCAAGACTGAGAATAGCTCTACAGATGACAGCAAGACACAAAACGGCT 1230
Query 1436 CCGCAGAAGATGGCGA-GAAAGAATTCAAACAGGTTA-AAAGTCGTAGAAATAGGa-aaa 1492
| |||||||||||||| || || ||||| ||||| | ||| ||||| ||||| | |||
Sbjct 1231 CAGCAGAAGATGGCGAAGAT-GAGTTCAAGCAGGTCAGAAAC-CGTAGGAATAGTAGAAA 1288
Query 1493 aaa 1495
|||
Sbjct 1289 AAA 1291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64334423805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5