BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69270.1
Length=2014
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476053 jgi|Araly1|476053|fgenesh2_kg.2__1183__AT1G69270.1 2796 0.0
> Ahg476053 jgi|Araly1|476053|fgenesh2_kg.2__1183__AT1G69270.1
Length=1963
Score = 2796 bits (1514), Expect = 0.0
Identities = 1861/2019 (92%), Gaps = 61/2019 (3%)
Strand=Plus/Plus
Query 1 AATGTCATTTTCTTTTTGAGTAAAGAAACTTTCTTCTTTTGCAACTTGAAAATTTTCGAT 60
|||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1 AATGTCATTTTCTTTTGGAGTAAAGAAACTTTCTTCTTTTGCAACTTG-AAA-TTTCGAT 58
Query 61 TTCGAGAGCGAAGGAagagagagagagagggagagaTCaaaaaaaTTTGTGAAAAAAGAG 120
||||||||| |||| | | ||||||||||||||||||||| ||||||||
Sbjct 59 TTCGAGAGC-----------GAGA-A-A--GAGAGATCAAAAAAATTTGTG-AAAAAGAG 102
Query 121 ATTTATTTTAGGGTTTTGTTGATTTTCTTTGTTCATTTTGCCGTCGTCTCTTTCTCTTTC 180
| | | ||| || | || || | ||| | |||||||||||| ||
Sbjct 103 A--CA----A----TTT-TT-A--TT-TTAG---GGTTT----T-GTCTCTTTCTCTCTC 139
Query 181 TCTTGTGAAGAAAAAGAAGAAAAATGAAACTTCTGGGTTTGGTCTTCTTGCTGTTTAATC 240
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 140 TCTTGTGAAG---AAGAAGAAAAATGAAAATTCTGGGTTTGGTCTTCTTGCTGTTTAATT 196
Query 241 TGTTTATGTTTTCGTTTTCTCGGAAACTTTTAACCGAGAGTGGTGGTGGTCTCCACGACG 300
||||| ||||||| ||||||||||||||||| ||||||| ||||||| |||||||
Sbjct 197 TGTTTGTGTTTTCATTTTCTCGGAAACTTTTGACCGAGA------GTGGTCTTCACGACG 250
Query 301 AAGCTGCTCTGTTGAAGTTGAAGAGTAGTTTCTTGGATCCAAATGGAGTTCTGTCTAGCT 360
|||||| ||| |||||| |||||||||||||||| ||||||||||||||||| |||||||
Sbjct 251 AAGCTGTTCTTTTGAAGCTGAAGAGTAGTTTCTTCGATCCAAATGGAGTTCTATCTAGCT 310
Query 361 GGGTTTCCGACAGCTCATCAAACCATTGTTCTTGGTACGGTGTCTCTTGCAACTCTGATT 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 311 GGGTTTCCGACAGCTCATCAAACCATTGTTCTTGGTACGGTGTCTCTTGTAACTCTGATT 370
Query 421 CGAGAGTCGTTTCTTTAATTCTCAGAGGCTGTGATGAGCTTGAAGGTAGTGGTGTTCTTC 480
|||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 371 TAAGAGTCGTCTCTTTGATTCTCAGAGGTTGTGATGAGCTTGAAGGTAGTGGTGTTCTTC 430
Query 481 ATCTCCCAGATTTGTCTTCTTGTTCTTCAAGTAAAAGAAGACTTGGTGGTGTAATCTCTC 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 ATTTCCCAGATTTGTCTTCTTGTTCTTCAAGTAAAAGAAGACTTGGTGGTGTAATCTCTC 490
Query 541 CTGTTGTTGGAGATTTGTCTGAAATTAGGGTTTTATCTCTGTCTTTTAATGATCTTAGAG 600
| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 491 CGGTTGTGGGAGATTTGTCTGAAATTAGGGTTTTGTCTCTGTCTTTTAATGATCTAAGAG 550
Query 601 GTGAGATTCCAAAGGAGATTTGGGGGTTGGAGAAATTAGAGATTCTTGATCTTAAAGGTA 660
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 GTGAAATTCCAAAGGAGATTTGGGGGTTGGAGAAATTAGAGATTCTTGATCTTAAAGGTA 610
Query 661 ACAACTTTATCGGTGGAATTAGGGTTGTTGATAATGTTGTTCTTAGGAAACTTATGAGTT 720
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 611 ACAGCTTTATCGGTGGAATTAGGGTTCTTGATAATGTTGTTCTTAGGAAACTTATGAGTT 670
Query 721 TTGAGGATGAAGATGAAATTGGTCCAAGCTCAGCTGATGATGATTCTCCTGGTAAATCTG 780
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 671 TTGAAGATGAAGATGAAATTGGTCCAAGCTCAGC---TGATGATTCTCCTGGTAAACCTG 727
Query 781 GATTGTATCCGATTGAGATAGCTTCTATTGTGTCAGCTTCAGTGATTGTCTTTGTGCTTC 840
||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 728 GATTGTATCCGATTGAGATTGCTTCGATTGTGTCGGCTTCAGTGATTGTCTTTGTGCTTC 787
Query 841 TTGTTCTTGTGATCTTGTTCATCTACACGAGGAAATGGAAACGAAACTCTCAGGTTCAGG 900
||||||||||| |||||||| ||||||||| |||||||||||||||||||||| ||||||
Sbjct 788 TTGTTCTTGTGCTCTTGTTCCTCTACACGAAGAAATGGAAACGAAACTCTCAGATTCAGG 847
Query 901 TAGATGAGATCAAGGAGATTAAAGTGTTTGTTGACATTGGTATTCCTCTGACGTATGAGA 960
||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 848 TAGATGAAATCAAGGAGATCAAAGTGTTTGTGGACATTGGTATTCCTCTGACGTATGAGA 907
Query 961 TCATTGTTAGAGCTACTGGTTACTTTAGTAACTCTAACTGTATCGGTCACGGCGGTTTCG 1020
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 908 TCATTGTTAGAGCTACTGGTTACTTTAGTAACTCTAACTGTATTGGTCATGGCGGTTTTG 967
Query 1021 GTTCGACTTATAAAGCAGAGGTGTCTCCAACGAATGTGTTTGCTGTTAAAAGACTCTCTG 1080
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 GTTCGACGTATAAAGCAGAGGTGTCTCCAACGAATGTGTTTGCTGTTAAAAGACTCTCTG 1027
Query 1081 TTGGGAGGTTTCAAGGTGATCAACAGTTTCATGCTGAGATCTCTGCTCTTGAGATGGTTA 1140
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 TTGGGAGGTTTCAAGGGGATCAACAGTTTCATGCTGAGATCTCTGCTCTTGAGATGGTTA 1087
Query 1141 GGCATCCGAATCTTGTTATGTTAATCGGTTACCATGCGAGCGAAACCGAGATGTTTCTTA 1200
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1088 GGCATCCGAATCTTGTTATGTTAATCGGTTACCACGCGAGCGAAACCGAGATGTTTCTTA 1147
Query 1201 TTTACAACTACTTATCTGGAGGAAACCTTCAAGATTTCATTAAAGAGAGATCGAAAGCTG 1260
| |||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 1148 TCTACAACTACTTATCCGGGGGAAACCTTCAAGATTTCATTAAAGAAAGATCGAAAGCTG 1207
Query 1261 CTATTGAGTGGAAGGTACTTCACAAGATTGCTCTTGATGTAGCGCGTGCTCTCTCCTATC 1320
|||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1208 CTATTGAGTGGAAGGTTCTTCACAAGATTGCTCTTGATGTTGCGCGTGCTCTCGCCTATC 1267
Query 1321 TTCACGAACAGTGTTCTCCTAAAGTCTTGCATAGAGATATCAAACCGAGTAACATACTCT 1380
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1268 TTCACGAACAGTGTTCCCCGAAAGTCTTGCATAGAGACATCAAACCGAGTAACATACTCT 1327
Query 1381 TGGACAACAACTACAACGCTTATCTATCTGATTTCGGACTCTCGAAACTCTTGGGAACTT 1440
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1328 TGGACAACAACTACAACGCTTATCTATCCGATTTCGGACTCTCGAAACTCTTGGGAACTT 1387
Query 1441 CGCAGTCTCATGTCACAACTGGTGTGGCTGGAACATTCGGATATGTAGCTCCAGAGTACG 1500
||||||||||||||||||| ||||| ||||| |||||||| ||||| |||||||| ||||
Sbjct 1388 CGCAGTCTCATGTCACAACAGGTGTAGCTGGTACATTCGGTTATGTTGCTCCAGAATACG 1447
Query 1501 CAATGACATGCCGAGTCTCGGAGAAAGCAGATGTTTACAGCTATGGGATAGTCCTCTTGG 1560
||||||| ||||| ||||| ||||||||||||||||||||||| || ||||| |||||||
Sbjct 1448 CAATGACGTGCCGTGTCTCCGAGAAAGCAGATGTTTACAGCTACGGCATAGTTCTCTTGG 1507
Query 1561 AGCTGATATCGGACAAACGAGCTCTGGATCCTTCTTTCTCATCGCATGAGAACGGGTTCA 1620
|||| ||||||||||| ||||| || ||||| |||||||| ||||||||||||||||| |
Sbjct 1508 AGCTCATATCGGACAAGCGAGCGCTAGATCCATCTTTCTCTTCGCATGAGAACGGGTTTA 1567
Query 1621 ACATTGTCTCGTGGGCTCATATGATGTTGAGTCAAGGCAAAGCGAAAGAAGTCTTCACCA 1680
|||| || || ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1568 ACATCGTGTCCTGGGCACATATGATGTTGAGTCAAGGCAAAGCCAAAGAAGTCTTCACCA 1627
Query 1681 CAGGACTATGGGAGACTGGTCCTCCAGACGATTTGGTCGAGGTTCTGCATTTGGCACTCA 1740
|||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1628 AAGGACTATGGGAGACTAGTCCACCAGACGATTTGGTCGAGGTTCTGCATTTGGCTCTCA 1687
Query 1741 AATGCACCGTCGATAGCCTCTCGATAAGGCCGACAATGAAACAAGCTGTAAGACTGCTGA 1800
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1688 AATGCACAGTCGATAGCCTTTCGATAAGGCCGACAATGAAACAAGCTGTAAGACTGCTGA 1747
Query 1801 AACGAATCCAGCCTTCTAGATTGTGATACAAAGCTAGAAGAAAG-GTGTTTTTAG-AG-- 1856
||||||||| |||||||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct 1748 AACGAATCCTGCCTTCTAGATTGTGATACAAAGCTAGAAGAAAGTGTGTGTTTAGTAGAT 1807
Query 1857 GATTTGTACAGCAGCAAACAAGTGCCTAGCCATTAGAATC-TTTCTCAAGTCTGTTTTTT 1915
||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||
Sbjct 1808 GATTTGTACAGCAGCAAACAAGTGCGTAGCCATTAGAATCATTT-TCAAGTCTGTTTTTA 1866
Query 1916 ATATTTTCAGTGCTAGGGAGGTTTTTCATATGCATCATCAAAATGTTATTCTCAGTCTAC 1975
| |||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1867 AAATTTTCAGTG-TAGGGAGGTTTTTCATATGAATCATCAAAATGTTATTCTCATTCTAC 1925
Query 1976 TCTCTTGAAAACTGATATAAATGATGTTTCTTTCTCCTT 2014
|||||||||| ||||||||||||||||||||||||||||
Sbjct 1926 TCTCTTGAAA-CTGATATAAATGATGTTTCTTTCTCCTT 1963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75723407060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5