BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69295.1
Length=1688
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926223 jgi|Araly1|926223|scaffold_201784.1 933 0.0
Ahg921611 jgi|Araly1|921611|scaffold_102892.1 279 3e-74
> Ahg926223 jgi|Araly1|926223|scaffold_201784.1
Length=726
Score = 933 bits (505), Expect = 0.0
Identities = 658/729 (90%), Gaps = 22/729 (3%)
Strand=Plus/Plus
Query 705 TCTCTTTGAATC-ACTCAGTCATGTCGGTTTTACTTCCTCTCTGTCTGATTATCTCCATG 763
||||| |||| | || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTGAA-CTACACAATCATGTCGGTTTTACTTCCTCTCTGTCTGATTATCTCCATG 59
Query 764 TTCACCTATTCAAACGCAGCGTATTGTCTTTGCAAAGAGGGGAACGAGCAAGTGCTTCAG 823
||||| || |||||||||| ||||||| | |||||||| |||||||||||||| ||||||
Sbjct 60 TTCACATACTCAAACGCAGTGTATTGTGTGTGCAAAGATGGGAACGAGCAAGTTCTTCAG 119
Query 824 AAGGCAATAGACTACGCTTGTGGAAATGGAGCTGACTGTACCCAGATCCA-ACCCACCGG 882
|||||||||||||||||||||||||| ||||||||||||| |||||||| || ||||
Sbjct 120 AAGGCAATAGACTACGCTTGTGGAAACGGAGCTGACTGTAGTCAGATCCAGACAT-CCGG 178
Query 883 AGCTTGTTACCAACCTAACACCGTCAAAAACCACTGTGACGTCGCCGTCAACAGTTACTA 942
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 179 AGCTTGTTTCCAACCTAACACCGTCAAAAGCCACTGTGACGTCGCCGTCAACAGTTACTA 238
Query 943 CCAGAAAAAAGCTTCTTCCGGTGCCACCTGTGACTTTAACGGCGCCGCCTCCCCCTCTAC 1002
|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 239 CCAGAAGAAAGCTTCTTCCGGTGCCACCTGTGACTTTAACGGCGCCGCCACCCCCTCTAA 298
Query 1003 TACCCCTCCGTCAACTGCTTCAAACTGTTTAACTGGTTCAAGCTCTAGTGGCACTCCTAC 1062
||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 299 TACCCTTCCTTCAACTGCTTCAAGCTGTTTAACTGGTTCAAGCTCTAGTGGCACTCCTAC 358
Query 1063 CACAGGAACACCAACTACTGGGAC---A-C--C---AAC-C-AG----TGGGACCCCGAC 1107
||||||||| ||||||| |||||| | | | ||| | | ||| ||||| ||
Sbjct 359 CACAGGAACCCCAACTAGTGGGACCCCAACTACCGGAACTCCAACCACTGGAACCCCCAC 418
Query 1108 TACCGGAACTCCGACCACCGGAACCCCCACCACTGGAACTCCAACCAGTGGGACTCCAAC 1167
|||||||||||||| || || ||||||||||| |||||||| || |||||||| |||||
Sbjct 419 CACCGGAACTCCGACTACTGGGACCCCCACCACCGGAACTCCGACAAGTGGGACCCCAAC 478
Query 1168 TAGTGGCTTCCCAAATACCGGGACTCCAAACACAGGGACTAACACTGGGATGCCAAATTC 1227
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 479 TAGTGGCTTCCCAACTACCGGGACTCCGAACACAGGGACTAACACTGGGATGCCAAATTC 538
Query 1228 CAACGGGATGCCAACTTCATCGTCATCTTCGGTGTTCCCGGGGACTACTCTTGGCCCGAC 1287
| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 539 CGGCGGGATGCCAACTTCATCGTCATCTTCGGTGTTCCCGGGCACTACTCTTGGACCGAC 598
Query 1288 TGGGAGCGGGGGACTAGGCGATCCAAATGCTGGAGAGAAGCTGTCTGTTCGAACTAACAC 1347
||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 599 TGGTAGCGGGGGACTAGGTGATCCAAATGCTGGAGAGAAGCTGTCTGTCCGAACTAACAC 658
Query 1348 AGTGGTCTTCTTATTAACCGGTGTAGCAGCAATGCTTGTCATATGAGGGCTTAGAAGTCA 1407
||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||
Sbjct 659 GGTGGTCTTCTTATTATCCGGTGTAGCT--A-TGCTTGTCATATGAGGGCTTAGAAGTCA 715
Query 1408 CACGCGGTT 1416
|||| ||||
Sbjct 716 CACGAGGTT 724
> Ahg921611 jgi|Araly1|921611|scaffold_102892.1
Length=644
Score = 279 bits (151), Expect = 3e-74
Identities = 277/336 (82%), Gaps = 16/336 (5%)
Strand=Plus/Plus
Query 720 CAGTCATGTCGGTTTTACTTCCTCTCTGTCTGAT-TATC-TCCAT-GTTCACCTATTCAA 776
|||||||| ||||||| |||||||| | ||| | | || | ||| ||| ||||| ||||
Sbjct 17 CAGTCATGGCGGTTTTGCTTCCTCTGTTTCT--TCTCTCTTTCATGGTT-ACCTACTCAA 73
Query 777 ACGCAGC-GTATTGTCTTTGCAAAGAGGGGAACGAGCAAG-TGCTTCAGAAGGCAATAGA 834
|||| || || |||| | ||||| || | || ||||| | | |||||||||| |||||
Sbjct 74 ACGCGGCGGT-TTGTGTGTGCAAGGACGCGAGCGAGCTGGAT-CTTCAGAAGGTGATAGA 131
Query 835 CTACGCTTGTGGA-AATGGAGCTGACTGTACCCAGATCCA-ACCCACCGGAGCTTGTTAC 892
|| ||| |||||| | || ||||||||||| ||||| || | | ||||||||||||||
Sbjct 132 CTTCGCATGTGGAGGA-GGTGCTGACTGTACTCAGATTCAGA-CGACCGGAGCTTGTTAT 189
Query 893 CAACCTAACACCGTCAAAAACCACTGTGACGTCGCCGTCAACAGTTACTACCAGAAAAAA 952
||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 190 CAACCAAACACCGTCAAGAACCACTGTGACGTCGCCGTTAACAGCTACTACCAGAAGAAA 249
Query 953 GCTTCTTCCGGTGCCACCTGTGACTTTAACGGCGCCGCC-TCCCCCTCTACTACCCCTCC 1011
|||||| |||||||||||||||||||||||||||||||| || | || ||| |||||||
Sbjct 250 GCTTCTACCGGTGCCACCTGTGACTTTAACGGCGCCGCCGTCATC-TCCACTTCCCCTCC 308
Query 1012 GTCAACTGCTTCAAACTGTTTAACTGGTTCAAGCTC 1047
|| ||| | |||||||||||| || |||| |||||
Sbjct 309 TTCGACTACGTCAAACTGTTTATCTAGTTCCAGCTC 344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63305987190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5