BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69310.1
Length=1360
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476056 jgi|Araly1|476056|fgenesh2_kg.2__1186__AT1G69310.1 1395 0.0
> Ahg476056 jgi|Araly1|476056|fgenesh2_kg.2__1186__AT1G69310.1
Length=1159
Score = 1395 bits (755), Expect = 0.0
Identities = 888/950 (93%), Gaps = 17/950 (2%)
Strand=Plus/Plus
Query 122 TCATCATGAACGATCCTGATAATCCCGATCTGAGCAACGACGACTCTGCTTGGAGAGAAC 181
||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||| |
Sbjct 74 TCATCATGAACGATCCTGATAATCCCGATCTGACCAACGACGACTCTGCTT-G-GAG-A- 129
Query 182 TCACACTCACAGCTCAAGATTCTGACTTCTTCGACCGAGACACTTCCAATATCCTCTCTG 241
|| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 130 -CA-ACTCACATCTCAAGATTCTGACTTCTTCGACAGAGACACTTCCAATATCCTCTCTG 187
Query 242 ACTTCGGTTGGAACCTCCACCACTCCTCCGATCATCCTCACAGTCTCAGATTCGACTCCG 301
||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 188 ACTTCGGATGGAACCTCCACCACTCCTCCGATCATCAACACAGTCTCCGATTCGACTCCG 247
Query 302 ATTTAACACAAACCACCGGAGTCAAACCTACCACCGTCACTTCTTCTTGTTCCTCATCCG 361
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 ATTTAACACCAACCGCCGGAGTCAAACCTACCACCGTCACTTCTTCTTGTTCCTCATCCG 307
Query 362 CCGCCGTTTCCGTTGCCGTTACCTCTACTAATAATAATCCCTCAGCTACCTCAAGTTCAA 421
|||||||||| |||||||||||||||| ||||||||||||||| |||||||| |||||||
Sbjct 308 CCGCCGTTTCTGTTGCCGTTACCTCTAATAATAATAATCCCTCCGCTACCTCGAGTTCAA 367
Query 422 GTGAAGATCCGGCCGAGAACTCAACCGCCTCCGCCGAGAAAACACCACCACCGGAGACAC 481
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 368 GTGAAGATCTGGCCGAGAACTCAACCGCCTCCGCCGAGAAAACACCACCACTGGAGACAC 427
Query 482 CAGTGAAGGAGAAGAAGAAGGCTCAAAAGCGAATTCGGCAACCAAGATTCGCATTCATGA 541
||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 428 CAGCGAAGGAGAAGAAGAAGGCTCAAAAGCGAATTCGGCAACCGAGATTTGCATTCATGA 487
Query 542 CCAAGAGTGATGTGGATAATCTTGAAGATGGATATCGATGGCGTAAATATGGACAAAAAG 601
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 488 CCAAGAGTGATGTGGATAATCTTGAAGATGGATATCGATGGCGTAAATATGGGCAAAAAG 547
Query 602 CCGTCAAGAATAGCCCATTCCCAAGGAGCTACTATAGATGCACAAACAGCAGATGCACGG 661
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 548 CCGTCAAGAATAGCCCATTCCCAAGGAGTTACTATAGATGCACAAACAGCAGATGCACGG 607
Query 662 TGAAGAAGAGAGTAGAACGTTCATCAGATGATCCATCGATAGTGATCACAACATACGAAG 721
||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 608 TGAAGAAGAGAGTAGAACGTTCATCCGAAGATCCATCAATAGTGATCACAACATACGAAG 667
Query 722 GACAACATTGCCATCAAACCATTGGATTCCCTCGTGGTGGAATCCTCACTGCACACGACC 781
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
Sbjct 668 GACAACATTGCCATCAAACCATTGGATTCCCTCGTGGCGGAATCCTCACTTCACACGATC 727
Query 782 CACATAGCTTCACTTCTCATCATCATCTCCCTCCTCCATTACCAAATCCTTATTATTACC 841
| ||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 728 CTCATAGCTTCACATCTCATCACCATCTCCCTCCCCCATTGCCAAATCCTTATTATTACC 787
Query 842 AAGAACTCCTTCATCAACTTCACAGAGACAATAATGCTCCTTCACCGCGGTTACCCCGAC 901
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 788 AAGAACTCCTTCATCAACTTCACAGAGACAATAATGCTCCTTCACCGCGGTTACCCAAAT 847
Query 902 CTACTACTGAAGATACACCTGCCGTGTCTA-CTCCATCAGAGGAAGGCTTACTTGGTGAT 960
|||| ||||||||| ||| ||||||||||| | ||||||||||||||| |||||||||||
Sbjct 848 CTACAACTGAAGATGCACTTGCCGTGTCTAAC-CCATCAGAGGAAGGCCTACTTGGTGAT 906
Query 961 ATTGTACCTCAAACTATGCGCAACCCTTGAGGTAAG--CTTGGTA--CGTAGCAATAGCT 1016
||||||||||||||||||||||| |||| |||||| |||||| |||||||| ||||
Sbjct 907 ATTGTACCTCAAACTATGCGCAATCCTTAAGGTAACTTCTTGGTTTGCGTAGCAACAGCT 966
Query 1017 AAGGAGGTGCTAACTCATTATATATAGAAGATATTGCAGACCAGAATATG 1066
|||||||||||||||||||||| | ||| ||| | ||||||| ||||||
Sbjct 967 AAGGAGGTGCTAACTCATTATAGA-AGA-GAT-T-GCAGACCC-AATATG 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50894094195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5