BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G69325.1

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg315935 jgi|Araly1|315935|fgenesh1_pm.C_scaffold_2000968           555    1e-157


> Ahg315935 jgi|Araly1|315935|fgenesh1_pm.C_scaffold_2000968
Length=633

 Score =  555 bits (300),  Expect = 1e-157
 Identities = 345/366 (94%), Gaps = 6/366 (2%)
 Strand=Plus/Plus

Query  1    ATGAACGAAT-CCACAGTGCAACGAGCGAAACCTGAA-CATATGGCAGCTGTTGTGGATC  58
            ||||||| || |||  | ||||||||| ||||||||| || ||||||||||| |||||||
Sbjct  271  ATGAACG-ATACCAGGGAGCAACGAGCAAAACCTGAACCA-ATGGCAGCTGTGGTGGATC  328

Query  59   AATGGAAGGAAACAGAGATAAGCAAATCGAGAAAGAAGTACGAGAAGCTAAGTGAGAAGA  118
            ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct  329  AATGGAAGGAAACAGAGCTAAGCAAATCGAGAAACAAGTACGAGAAGCTAAGTGAGAAGA  388

Query  119  TTGTGTCATGGgaagataagaagaggaaaaaggcaaagagaaaacttcatagaacagaga  178
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  389  TTGTGTCATGGGAAGATAAGAAGAGGAAAAAGGCAAAGAGAAAGCTTCATAGAACAGAGA  448

Query  179  gaag-tgtagagaaaacaaagTTGAAGGCGACCCAGAGGTTCAGGGACGAAAATGAACGT  237
            || | |||||||||||||||||||||||||  ||||||||||| ||||||||||||||||
Sbjct  449  GA-GCTGTAGAGAAAACAAAGTTGAAGGCGGTCCAGAGGTTCACGGACGAAAATGAACGT  507

Query  238  ATTGAGATTATCGTTGCAAGTGCAAGAGCACATGCGTATGAGAGTCGAATAAAAGAAGAG  297
            |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct  508  ATTGAGATCATCGTTGCAAGTGCAAGAGCACATGCATATGAGAGTCGAATGAAAGAAGAG  567

Query  298  TTGAAGGTTAAGGAGAAAGCAAACCTCATGAGAACAACTGGTAGGAAACCCTCTACATGC  357
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  568  TTGAAGGTTAAGGAGAAAGCAAACCTCATGAGAACAACTGGTAGGAAACCCTCTGCATGC  627

Query  358  CTCTGA  363
            ||||||
Sbjct  628  CTCTGA  633



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12934744671


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5