BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69330.1
Length=1374
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476060 jgi|Araly1|476060|fgenesh2_kg.2__1190__AT1G69330.1 1805 0.0
> Ahg476060 jgi|Araly1|476060|fgenesh2_kg.2__1190__AT1G69330.1
Length=1305
Score = 1805 bits (977), Expect = 0.0
Identities = 1238/1353 (92%), Gaps = 61/1353 (5%)
Strand=Plus/Plus
Query 2 CACGGCGGATCAACgagagagagaaaaagagagagGCTTTA------TTC-T--TCTCTT 52
||||||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 1 CACGGCGGATCAACGAGAGAGAGAAAAAGAGAGAGGCTTTATTCTTCTTCTTCCTCTCTT 60
Query 53 CCCCGTTTCGATCTCCTCTTTAATGCATCTGCGTATCTGATTTTGAAAGATTTAACGGTT 112
|||||||||||| || |||| ||| ||||||||||||||| |||||||||||||||||||
Sbjct 61 CCCCGTTTCGATATCTTCTTCAATACATCTGCGTATCTGA-TTTGAAAGATTTAACGGTT 119
Query 113 CTTTAAAATGATGGGTATTGGTCAAAGAAGCTCTTTTCAATCTGGGAAGGTTACTGGGTA 172
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGTAAAAATGATGGGTATTGGTCAAAGAAGCTCTTTTCAATCTGGGAAGGTTACTGGGT- 178
Query 173 AATG-TTGGTACATTGGCTCAGGTTTTATAAAGTTTGGTGATCATTCTCAGTTTCAAGTT 231
|||| || ||||||||||||| | | || | | | | | |||||
Sbjct 179 AATGTTTTGTACATTGGCTCA-G--------A--TT--T--T-A---T-A-----AAGTT 213
Query 232 TGATCAAAATGTGGGGCTTTGCGTCGAATGTCATTGGAAGTATGGGGTTAAAGAAGTCCC 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 TGATCAAAATGTGGGGCTTTGCGTCGAATGTCATTGGAAGTATGGGGTTAAAGAAGTCCC 273
Query 292 CTAAAGATTCAGCTCAAGCATCCTCTCAATGCTCAGATGATGAGGTTTCAAATATTAGCA 351
|||||||| ||||||||||||||||||||||||| ||||| |||||||||||| ||||||
Sbjct 274 CTAAAGATCCAGCTCAAGCATCCTCTCAATGCTCTGATGACGAGGTTTCAAATGTTAGCA 333
Query 352 GGGATGAAGAGGGATTAGAATGTCCCATATGTTGGGAATCTTTCAACATTGTTGAGAATG 411
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 334 GGGATGAAGAAGGATTAGAATGTCCCATATGTTGGGAATCTTTCAACATTGTCGAGAATG 393
Query 412 TTCCTTATGTGTTATGGTGTGGTCATACTCTTTGCCAGAATTGTGTCTTTGGTCTCCAAT 471
|||| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 394 TTCCCTATGTGTTATGGTGTGGTCATACTCTTTGTCAGAATTGTGTCTTTGGGCTACAAT 453
Query 472 CTGCTGTCTTGAGACTCTCAAGCCAAGATATTC-GGATTCCGTTTTTCGTCTCGTGCCCG 530
||||||| ||||||||||| |||||||||| || ||||||| ||||||||||||||||||
Sbjct 454 CTGCTGTTTTGAGACTCTCGAGCCAAGATA-TCAGGATTCCCTTTTTCGTCTCGTGCCCG 512
Query 531 TGGTGTCAGTTGCTTTCGTTCAGGATTGTTTACAAGGGTAATCTAAAGTTCCCTCGGAAG 590
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 513 TGGTGTCAGTTGCTTTCGTTCAGGATTGTCTACAAGGGTAATCTAAAGTTCCCTCGGAAG 572
Query 591 AATTTCTTCCTTCTCTGGATGGTTGAGAGTCTGAATGGTGACAGGACAAGTCATGGTGAC 650
||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 573 AATTTCTTCCTTCTCTGGATGGTTGAGAGTCTGAATGGTGACAGG---A--C------A- 620
Query 651 AGGACAAGTCATGGTTCCTTGGTCA-CTGATAACCAGCAATCGGCTCCGACTCCGAGGTG 709
| | | |||||||| ||||||| | |||||||||||||||| |||||||||||||||
Sbjct 621 A-G-C----CATGGTTCTTTGGTCAGC-GATAACCAGCAATCGGTTCCGACTCCGAGGTG 673
Query 710 TAGCATGTCTCTGGGAAACCACAGCAGCAACAACAATCTGGTTGCGAGGCCTTTATTGCG 769
||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||
Sbjct 674 TAGCATGTCTCTGGGAAACCAGAGCAGCAACAACAATCTGATTGCAAGGCCTTTATTGCG 733
Query 770 TAACCAGTCTACAGACCTTTTGCCACATCATGACCACAGTAACCAACCAAGCAGACAACT 829
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 TAACCAGTCTACAGAACTTTTGCCACATCATGACCACAGTAACCAACCAAGCAGACAACA 793
Query 830 CTTCTCCTTTCACAAATCTCTTGATTTTTTCATCTCTTTCACCTCCAAGTTTCCGTTTGT 889
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 794 CTTCTCTTTTCACAAATCTCTCGATTTTTTCATCTCTTTCACCTCCAAGTTTCCGTTTGT 853
Query 890 GATCATCTTCCTTCTGATCGTATTCTTTGCTATACCTGGTAGCCTCATAATTCTTGCCCT 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 GATCATCTTCCTTCTGATCGTATTCTTTGCTATACCTGGTAGCCTCATAATTCTTGCCCT 913
Query 950 TTACTTCCTCCTCACAATACTTTTCGCAGTTCCAGCTGGTCTTGTACTATATTTTGCTTA 1009
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 914 TTACTTCCTCCTCACAATACTTTTCGCAGTTCCTGCTGGTCTGGTACTATATTTTGCTTA 973
Query 1010 TCCTATTCTAGAAAGGTTGGTAAATGAAATAACATCATCATGAGACTGGTGCTGAACTCA 1069
|||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||
Sbjct 974 CCCTATTCTAGAAAGGTTGGTGCATGAAATAACATCATCATGAGATTGGTTCTGAACTCA 1033
Query 1070 TAACTCCTATTATTGGTTGCTCGGCCCATTCTGGGTGATTGTAGTT-CACTATGGAACCC 1128
| |||||||||||||||||||||||||| |||| ||| |||||||| || ||||||||||
Sbjct 1034 TGACTCCTATTATTGGTTGCTCGGCCCAGTCTGTGTGTTTGTAGTTTCATTATGGAACCC 1093
Query 1129 TTTTTTAGCACTTTGGAGCCTTTGATGGTCAGAACTCAGAAGAAGTTTTTATGATTTTTG 1188
||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1094 TTTTTTAGCACTT-GGAGTCTTTGATGGTCGGAACTCAGAAGAAGTTTTTATGATTTGTG 1152
Query 1189 GTAGTTCTGCACATTTCTTATAATATTGTTTATTGCAAGATTGAGCATTGTATTTGTGAT 1248
||| || ||||||||| ||| |||||| ||||||||||| ||| ||||||||||||||||
Sbjct 1153 GTAATTTTGCACATTTTTTAAAATATTATTTATTGCAAGCTTGGGCATTGTATTTGTGAT 1212
Query 1249 TTTGAACTCTTGGTTTTAGTATTGTTGTGCAACTGTCTAAAGTTTTGGTTTTCAGATTTG 1308
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1213 TTTGAACTCTTGGTTTTAGTATTGTGGTGCAACTGTCTAAAGTTTTGGTTTGCAGATTTG 1272
Query 1309 TGCCATAATGGATCACATGTGTGTTATCTCTCT 1341
|||||||||||||||||||||||||||||||||
Sbjct 1273 TGCCATAATGGATCACATGTGTGTTATCTCTCT 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51427815033
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5