BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69360.1
Length=3259
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908513 jgi|Araly1|908513|Al_scaffold_0002_1594 3426 0.0
Ahg912387 jgi|Araly1|912387|Al_scaffold_0001_2641 497 2e-139
> Ahg908513 jgi|Araly1|908513|Al_scaffold_0002_1594
Length=2718
Score = 3426 bits (1855), Expect = 0.0
Identities = 2474/2757 (90%), Gaps = 105/2757 (4%)
Strand=Plus/Plus
Query 333 ATGGGAGAAACAGTTCATTGTGGAAGCTTCTTGTCCTCAATGAGGGATCTAAGTGAAGAT 392
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1 ATGGGAGAAACAGTTCATTGTGGAAGCTTCTTACCCTCAATGAGGGATTTAAGTGAAG-- 58
Query 393 ATTTCCAATACTTGTAGCTATTCAATG-T--ATTGTGGA-GGTGAT-AAAACTTTGCC-T 446
| ||| ||||||||||||||||||||| | ||||| | |||||| |||| |||||| |
Sbjct 59 A-TTCTAATACTTGTAGCTATTCAATGTTACATTGT-AATGGTGATCAAAA-TTTGCCAT 115
Query 447 TATGGGCAGTATCAGAA----TG--GTTTCTCGGCGAGACCT-C--CAACGGATTCTTAC 497
| |||| |||||||||| || ||||||||||||||||| | ||||||||||||||
Sbjct 116 T-TGGGAAGTATCAGAATGGTTGTTGTTTCTCGGCGAGACCTCCTGCAACGGATTCTTAC 174
Query 498 GAGAGAGATTTTTTGAAACAAACAATGCTTGAACATGAAGCTGTATTTAAGAATCAGGTT 557
|||||||||||||| |||||||| |||||| |||| |||||||| |||||||||||||||
Sbjct 175 GAGAGAGATTTTTTAAAACAAACCATGCTTCAACACGAAGCTGTTTTTAAGAATCAGGTT 234
Query 558 TATGAGCTTCACCGTTTGTATAGAACACAGAAGAGTTTGATGGCTGAAGTTAAGGGAAAG 617
||||| ||||||||||||||||| ||||||||||||||||||| ||||||| |||| |
Sbjct 235 TATGAACTTCACCGTTTGTATAGGACACAGAAGAGTTTGATGGATGAAGTT-AGGG---G 290
Query 618 AACTTTGTTGATCACTTGAACAACAATGAGCCTACACCGGGAAGTGGGATTAAACGAGGA 677
| | | | ||||||||||||||||||| || || |||||||||||||
Sbjct 291 -A--------A--A---G---AACAATGAGCCTACACCGGAAAATGAGATTAAACGAGGA 333
Query 678 TTTCTTTTCGGAAACTCGATATGTGGCGAAGGAAGCACCTCTCAAGATTGCAATG--T-T 734
|||||||| |||||||||||||| || |||| | | |||||||| || |||| | |
Sbjct 334 TTTCTTTTGGGAAACTCGATATGCGGTGAAGCTGGTAGCTCTCAAGCTTTTAATGTTTCT 393
Query 735 -GGC--AA-GGACAACAAGGTGTTAGAGGTTAGACCTGTCAAGGTTAGGAGAACAATGAT 790
|| || || || | |||||||||||||||||||| ||| | ||||||||||||||
Sbjct 394 ATGCAAAATGG-GAAGGATGTGTTAGAGGTTAGACCTGTGAAGCTCAGGAGAACAATGAT 452
Query 791 TGATCTTCAACTTCCCGCAGATGAGTATCTCCATACAGAGGGTGATAATACGACTTGTCC 850
||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||
Sbjct 453 TGATCTTCAACTTCCCGCAGATGAGTATCTCGATACAGAGAGTGAAAATACGACTTGTCC 512
Query 851 TCCTTATGAGCAGTCAAAAGAAGTT-G-G-TGAAAACATCTTCTTTG-AA-TCTCA-TCG 904
||||||||||||||||||| ||||| | | |||||| | ||||||| || || | |
Sbjct 513 TCCTTATGAGCAGTCAAAACAAGTTGGTGATGAAAAGTTGTTCTTTGAAAGAGGCAGT-G 571
Query 905 GAACGATTCT--TCTG---GA-TCTTCTTTGCTTATGAAGAACTCAAATGGATTTACTGA 958
| |||| || | || ||||||||| ||||||||||| ||||||||||||||||
Sbjct 572 CTTC--TTCTCATCGGAACGATTCTTCTTTGGTTATGAAGAACCCAAATGGATTTACTGA 629
Query 959 CTTGAACGAGCCAGTCCAATGCCAAGATTCAGTACCTGTTTCTTCTTCTTCCAGGGACTT 1018
|||||||||||| |||||||||||||| ||||| || | | ||||||||||||||||||
Sbjct 630 CTTGAACGAGCCTGTCCAATGCCAAGAATCAGTTCC--TCT-TTCTTCTTCCAGGGACTT 686
Query 1019 ATATTCTCTTTATGG-AGCAAACATTTCACACGTGCAAGGCCAGTGGGTGGaaaaaaaTA 1077
||||||||||||||| || |||||||||||| ||||||||||||||| ||||| ||||||
Sbjct 687 ATATTCTCTTTATGGAAG-AAACATTTCACATGTGCAAGGCCAGTGGTTGGAAGAAAATA 745
Query 1078 CTAGTCAAAATGGATGGATGGTTCTAGAAGCAGGGAACGGAAAAAGCACTCCAAGAGACA 1137
| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 746 CAAGTCAAAATGGATGGATGGTTCTACAAGCAGGGAGCGGAAAAAGCACTCCAAGAGACA 805
Query 1138 AGTTATGCCTGCCTTCCCATTCGGTACAAGTTCTTTCTAACAGTGCATTTCAACCTCTGG 1197
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 806 AGTTATGCCTGCCTTCCCATTCGGTACAAGTTCATTCTAACGGTGCATTTCAACCTCTGG 865
Query 1198 GATACCCTTCAACTGACCACAGCAAGTTATCGGGCGAAAGAGCATCTTTCAAATGTGAAG 1257
| ||||||||||||||||| || |||||||| ||||||||||||||||| |||| ||||
Sbjct 866 GCTACCCTTCAACTGACCATAGGAAGTTATCCGGCGAAAGAGCATCTTTTGAATGGGAAG 925
Query 1258 TTCGTCAAAGGAATCCTGAGGTTTCGTATGATAGCTATGTGGAATCAAGTGTGGCATCAA 1317
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 926 CTCCTCAAAGGAATCCTGAAGTTTCGTATGATAGCTATGTGGAATCAAGTGTGGCATCAA 985
Query 1318 ATGTTCCAAGCTTGAATCATGGATATCGCCCGGAATCTGTCAGACCTTGGAGCCATTGGA 1377
||| |||||||||||||||||| || ||||| ||||||||||||||||||| ||||||||
Sbjct 986 ATGCTCCAAGCTTGAATCATGGCTACCGCCCTGAATCTGTCAGACCTTGGAACCATTGGA 1045
Query 1378 TTTCATCATGGGAGAACCGAAGTAGCAGCTCAGTTCAGAAACCTTTGCCACTTCAAGCGA 1437
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1046 TTTCATCATGGGAGAACCGAAGTAGCAGCTCAGTTCAGAAACCCTTGCCACTGCAAGCGA 1105
Query 1438 ATCCATTCTTGACTTTTAATACTCAAGTACGAGCAGACTCAAGTGCAGAGATGAGAAGCC 1497
|||||||||||| ||||| ||| |||| | |||||||||||||||| |||||||||||||
Sbjct 1106 ATCCATTCTTGAATTTTACTACACAAGCAAGAGCAGACTCAAGTGCGGAGATGAGAAGCC 1165
Query 1498 GTGATTCTAACGGGCTTAACCAAGGATTCTCTTCATTCTCGGAGGAAAGTGCCTTTAATT 1557
||||||||||||||||||||||||||||||||||| | ||| ||||| |||||||||||
Sbjct 1166 GTGATTCTAACGGGCTTAACCAAGGATTCTCTTCAGTGTCGAAGGAATCTGCCTTTAATT 1225
Query 1558 TTCCATCAGTAAACTTTAACCATCTTAACAATGGCCCAAAAGGGGCAGTTACTAATGGTT 1617
| ||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1226 TACCATCAGGAAACTTTAATCATCTTAACAATGGCCCAAAAGGGGCTGTTACTAATGGTT 1285
Query 1618 CTTTGTGTGAGAGTGTGATGCATCAGAGTCTTAAAAACCTTCAAGGACCAAAAAAGCAGG 1677
||||| |||||||||||| ||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1286 CTTTGAGTGAGAGTGTGAAGCATCGGAGTCTTGAAAACCTTCAAGGACCAAAAAAGCAGG 1345
Query 1678 AGTGCTCTTCTGGTTTGCCCTGGATAAAACCTAAGCCCCTTAACAAAAATGGAAAAACCA 1737
|||||||| |||| ||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1346 AGTGCTCTGCTGGGTTGCCCTGGATAAAACCTATGCCCCTTAACAAAAATGGAATAACCA 1405
Query 1738 ATGGTGGTTTGGATTTGAATGCTTCTGCAAATCATCAATTCATGGAT-GAACGTGATATG 1796
|||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1406 ATGGCGGTTTGGATTTGAATGCTTCTGCAAATCATCAATTCATGGATGGAA-GTGATATG 1464
Query 1797 GGTGACAGCTCAAATTATGTA-CATCCTCAGAATGGTTTGAGGTCTGTTACATGTTCTAA 1855
||||||||||||||| ||||| | ||||||||||||||||||||||||| ||||||||||
Sbjct 1465 GGTGACAGCTCAAATAATGTATC-TCCTCAGAATGGTTTGAGGTCTGTTTCATGTTCTAA 1523
Query 1856 TGACGCCAACTTGAGACATGTTGAAATGGCCAATTCACAGAGTC-GTAGAAAGATTCTTG 1914
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1524 TGACGCCAACTTGAGACATGTTGAAATGGCCAATTCACAGAG-CAGTAGAAAGATTCTTG 1582
Query 1915 GTTTTCCTATCTCTCAGAAGCTTTCTATTTGCGAGGAGCACCCTTCCCTTATAACTTCTT 1974
|||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1583 GTTTCCCTATCTCTCAGAAGCATTCTATTTGCGAGGAGCACCCTTCCCTTATCACTTCTT 1642
Query 1975 CTGTGTGTATCTCTAATGAACCCAAGAAAGTAAACAACTTGGTGAAGATAAACCTCGATA 2034
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 1643 CTGTGTGTATCTCTAATGAACCCAAGAAAGTAAACACCTTGGTGAGGAGAAACCTCGATA 1702
Query 2035 TCAACCTGCCATGTGAAGCCTCGGTTTCTGAAGGAGTTGTTGTGGACAAGGAAGAAGGTA 2094
| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1703 TTAACCTGCCATGTGAAGCCTCGGTTTCTGAAGCAGTTGTTCTGGACAAGGAAGAAGGTA 1762
Query 2095 ATAAAGCTGCCACTCACAGGCAGCACATTGACTTGAATTTCTGTGCTAGCGAGGATGAAG 2154
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1763 AAAAAGCTGCCACTCACAGGCAGCACATTGACTTGAATTTCTGTGCTAGCGAGGATGAAG 1822
Query 2155 ATTCCGGCTTCTGTTCTAATCCAAGAGTGGAAACAAAAGCAACTACTTTGATAAATGTGG 2214
|||| ||||| |||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1823 ATTCTGGCTTGTGTTCTAATCCAAGAGTGGAAACAAAAGCAACTACTTTGATAGATTTGG 1882
Query 2215 AAGCTC-CCTTGACGCTTGAGAGTGAAGAAGAAGGAGGGAAATTTCCAGAGAAGAGAGAT 2273
|||||| || ||| ||||||| |||||| |||| || ||||| ||||| ||| ||||||
Sbjct 1883 AAGCTCTCCC-GACTCTTGAGAATGAAGATGAAGTAGCGAAATGTCCAGTGAACAGAGAT 1941
Query 2274 GAAG-C-T----GG---AGACTCTG-TGGA--TG-A-ACTCA-TCGAGG--C--A----G 2310
| || | | || ||| | || | || | | || | || | | | |
Sbjct 1942 GCAGACATTTCAGGGTTAGAGAAAGGTGAAGCTGGAGATTCTGTGGATGAACTCATTAAG 2001
Query 2311 -CAGCAG-A-A-GCTATAGTCACTATCTCACTGTCTTATCATTGCCGCAATACTGATGAA 2366
|||||| | | ||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 2002 GCAGCAGCAGAAGCTATCGTCACTATCTCACTGTCTTACCATTGCCGGAATACTGATGAA 2061
Query 2367 GCTGCTTCCTCTTCGACTGATGCAGTTGACAAGGAGCCGCTCTCTTGGTTTGTGAACACA 2426
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 2062 GCTGCTTCCTCTTCGACTGATGCAGTTGCCAAGGACCCGCTCTCTTGGTTTGTGAACACA 2121
Query 2427 ATAGCTTCTTGTGGCAATGATTTAGAGAGCAAAATTGATGCTTGTTTGGAAGCCAGAGAC 2486
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2122 ATAGCTTCTTGTGGCAATGATTTAGAGAAAAAAATTGATGCTTGTTTGGAAGCCAGAGAT 2181
Query 2487 TGTGAAGGCTGCCGTGAAGAATGTTCTTCAGGTGAGTTTGATTATTTTGAGGCAATGACC 2546
| ||||||||| | |||||||| |||||||| |||||||||||| || ||| |||||||
Sbjct 2182 TCTGAAGGCTGTCATGAAGAATATTCTTCAGATGAGTTTGATTACTTCGAGACAATGACT 2241
Query 2547 CTGAACTTAACACAGACCAAAGAAGAAGACTACATGCCAAAGCCTTTAATCCCTGAATAT 2606
||||||||| | |||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 2242 CTGAACTTACCCCAGACCAAAGAAGAAGACTACATGCCAAAGCCTTTAATTCCGGGATAT 2301
Query 2607 CTGAAATTTGATGGGACGGGTTCTATGGGTATCACAAGTAATAGGCCAAGAAGAGGACAA 2666
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 2302 CTGAAATTTGATGGGACGGGTTCTGTGGGTATCACAACTAATAGGCCAAGAAGAGGACAA 2361
Query 2667 GCGAGACGAGGAAGACCAAAGCGGGATTTCCAAAGGGATATTCTCCCTGGGCTAGCTTCT 2726
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2362 GCAAGACGAGGAAGACCAAAGCGGGATTTCCAAAGGGATATTCTCCCTGGGCTTGCTTCT 2421
Query 2727 CTGTCTAGGCTCGAAGTAACCGAAGATCTTCAGATGTTTGGGGGACTTATGAAAGCCACA 2786
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2422 CTGTCTAGGCTCGAAGTAACCGAAGATCTTCAGATGTTTGAGGGACTTATGAAAGCCACA 2481
Query 2787 GGCTACAACTGGAACTCAGGAATGGCCCGAAGGAGCTCAAACCGAGGAAGAAAACGACTG 2846
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2482 GGCTACAATTGGAACTCAGGAGTGGCCCGAAGGAGCTCAAACCGAGGAAGAAAACGACTG 2541
Query 2847 GTCAGCAACATTGACAGAGCTCCGGTTTGCTCCTCTTTGGCACAGCCAATGAATAACAGT 2906
|||||||||||||||||||||||||||||||| ||||| | |||||||||||||||| |
Sbjct 2542 GTCAGCAACATTGACAGAGCTCCGGTTTGCTCGTCTTTTCCGCAGCCAATGAATAACAAT 2601
Query 2907 AGTGTACAAATGGTGGGACTGGAAGATAGGAGCCTTACAGGGTGGGGAAATGCAACCAGA 2966
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2602 AGTGTACAAATGGTGGGACTGGAAGATAGGAGCCTTACAGGATGGGGAAATGCAACCAGA 2661
Query 2967 AGACCAAGGCGACATAGGTGCCCTGCAGGTACTCCCCCAACAGTGCTATTAACATAA 3023
|| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 2662 AGGCCAAGGCGACAAAGGTGCCCTGCAGGTACTCCCCCAACAGTGATATTAACATAA 2718
> Ahg912387 jgi|Araly1|912387|Al_scaffold_0001_2641
Length=2586
Score = 497 bits (269), Expect = 2e-139
Identities = 1093/1463 (75%), Gaps = 168/1463 (11%)
Strand=Plus/Plus
Query 1656 CTTCAAGGACCAAAAAAGCAGGAGTGCTCTTCTGGTTTGCCCTGGATAAAACCTAAG-CC 1714
|||||||| |||||||||||||| ||||| |||| ||||||||| ||||||| ||| ||
Sbjct 1189 CTTCAAGGGCCAAAAAAGCAGGAATGCTCAGCTGGGTTGCCCTGGCTAAAACCGAAGCCC 1248
Query 1715 CCTTAACAAAAATGGAAAAACCAATGG-TGGTTTGGATTTGAATGCTTCTGCA-AATCAT 1772
|||| |||||| ||||| ||||||| | ||| |||||||||||||| | | || ||
Sbjct 1249 CCTT-ACAAAAGTGGAATGTCCAATGGCTTCTTT-GATTTGAATGCTTC-G-ACAA--AT 1302
Query 1773 CAATTCATGGAT-GAACGTGA--TATGGGTGAC-AGCTCAAATTATG-TACATCCTCAGA 1827
|||||||||||| |||| ||| | ||| ||| | || | || | | | | ||| ||
Sbjct 1303 CAATTCATGGATGGAAC-TGACGCA-GGG-GACGACCT-GACTTGCGCTTC-TGCTCTGA 1357
Query 1828 ATGGTTTGAGGTCTG-TTACATGTTCTAATGACGCCAACTTGAG-ACATGTTGAAATG-G 1884
| |||||| | |||| || ||| |||||| | || ||| || | | | ||||||||| |
Sbjct 1358 AGGGTTTGCGATCTGCTT-CATACTCTAATAATGCAAACATGGGAAGA-GTTGAAATGAG 1415
Query 1885 CCAATTCACAGAGTCGTAGAAAGATTCTTGGTTTTCCTATCTCTCAGAAGC-TTTCTATT 1943
||| || |||||| ||| ||| ||| |||| || |||| | ||||| || | ||
Sbjct 1416 -CAACTCTCAGAGTAGTACAAAAATTATTGGGGGCCCAATCTTTGGGAAGCAATT-TGTT 1473
Query 1944 TGC--G-AGGAGC--ACCCTTCCCTTATAACT-TC-TT-C-TGTGTGTATCTCTAATGAA 1994
||| | |||||| || | ||||||| || || || | | || | || ||||| ||
Sbjct 1474 TGCAAGCAGGAGCGTACGC--CCCTTAT--CTCTCATTCCTTATG-GAAT-GCTAATCAA 1527
Query 1995 CCCAAGAAAGTAAA-CAACTTGGTGAAGATAAACCTCGATATCAACCTGCCATGTGAAGC 2053
| |||| ||||||| | ||||||| ||| | |||||||||||||| |||||||||| ||
Sbjct 1528 CACAAGGAAGTAAATC-ACTTGGTAAAGCGAGACCTCGATATCAACTTGCCATGTGATGC 1586
Query 2054 CTCGGTTTC---TGA--AGGA--GT--T---G-----T-TGTGGACAAGGAAGAAGGTAA 2095
||||||||| ||| || | || | | | ||| |||||| ||||||| ||
Sbjct 1587 CTCGGTTTCTGTTGACCAGCATGGTGCTAAAGCCTATTATGTAGACAAGAAAGAAGGGAA 1646
Query 2096 TAAAGCTGCC-ACTCACAGGCAGC-ACATTGACT-TGAATTTC-TGTGCT-A-G-CGAGG 2148
||||||||| ||| ||| || | ||||||| | |||| ||| |||||| | | || |
Sbjct 1647 AAAAGCTGCCAACT-TCAGACA-CTACATTGA-TCTGAA-TTCATGTGCTAATGAGGATG 1702
Query 2149 ATGAAGATTCCGGCTT-CTGTTCTAATCCAAGAGTGGAAACAAAAGCAACTACTTTGATA 2207
|||||||||||||||| || ||| | || || ||| |||||||||||| |||| ||||
Sbjct 1703 ATGAAGATTCCGGCTTGCT-TTCCAGTCTGAGTGTGAAAACAAAAGCAAGAACTTGGATA 1761
Query 2208 AATGTGGAAGCT-CCCTTGACGCTTGAGAGT---GAAGAA-GA-A--G---G-AGG-G-- 2252
|| |||||||| ||| | || || |||||| |||||| || | | | ||| |
Sbjct 1762 GATTTGGAAGCTCCCCCT-ACCCTCGAGAGTGAAGAAGAAGGAGATGGCTCGCAGGAGAA 1820
Query 2253 AA-ATTTCCAGAGAA----GAGA--GATG-AA-G-C----TGGAGACTCTGTGGATGAAC 2298
|| | | | | || | || |||| || | | ||| ||||| || ||||||
Sbjct 1821 AACAAAT-GAAAAAACTTTGGGATTGATGCAAGGCCAAGACGGAAACTCTATGAATGAAC 1879
Query 2299 TCATCGAGGCAGCAGCAGAAGCTA-TAGTCACTATCTCACTGTCTTATCATTGCCGCAAT 2357
||||| ||| |||||||||||| | |||| | |||||| ||||| ||| ||| ||
Sbjct 1880 TCATCAAGGTAGCAGCAGAAGC-ATTAGTTGCCATCTCAATGTCTGGTCACCAACGCCAT 1938
Query 2358 ACTGATGAAGCTGCTTCCTCTTCGACTGATGCAGTTGACAAGGAG-CCGCTCTCTTGGTT 2416
||||||| || |||||||||||||||||||| | || ||| || ||||||||||||||
Sbjct 1939 CCTGATGACGCAGCTTCCTCTTCGACTGATGCGGCTG-CAAAAAGCCCGCTCTCTTGGTT 1997
Query 2417 TG-TGAACACAAT-AGCTTCTTGTGGCAATGATTTAGAGAGCAAA-ATTGATGCTTGTTT 2473
|| ||| | ||| | ||||||| || |||| ||||| || ||| |||||| || |
Sbjct 1998 TGCAGAA-ATAATCA-CTTCTTGCGGTGATGAGTTAGAAAG-AAAGGTTGATGGTTCTCC 2054
Query 2474 GGAAGCCAGAGACTGTGAAGGCTGCCGTGAAGAATGTTCTTCAGGTGAGTTTGATTATTT 2533
||||||| ||||| ||| || | | | ||||| | |||||| || ||| ||||||| ||
Sbjct 2055 AGAAGCCACAGACTTTGAGGGTTACAGGGAAGACTATTCTTCTGGGGAGATTGATTACTT 2114
Query 2534 TGAGGCAATGACCCTGAACTTA-ACA-CAGACCAAA-GAAGAAGACTACATGCCAAAGCC 2590
||| || ||||||||||| || ||| |||| |||| |||||||||||||||||| ||||
Sbjct 2115 TGAAGCCATGACCCTGAA--TATACAGCAGA-CAAAGGAAGAAGACTACATGCCAGAGCC 2171
Query 2591 TTTAATCCCTGA-ATATCTGAAATTTGATGGGACGGGTTCTATGGGTATCACAAGTAATA 2649
||| ||||||| | |||||||||| || | | | | | ||||| ||| |
Sbjct 2172 ATTAGTCCCTGAGA-ATCTGAAATTCGA----A--GATAC-A--GGTAT------TAACA 2215
Query 2650 GGCCAAGAAGAGGACAAGCGAGACGAGGAAGACCAAAGCGGGATTTCCAAAGGGATATTC 2709
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 2216 AGCCAAGAAGAGGACAAGCAAGACGAGGAAGACCAAAGCGGGATTTCCAGAGGGATATTC 2275
Query 2710 TCCCTGGGCTAGCTTCTCTGTCTAGGC-TCGAAGTAACCGAAGATCTTCAGATGTTTGGG 2768
||||||| || |||||||||| |||| | ||||| || |||||| | || |||||||||
Sbjct 2276 TCCCTGGACTCTCTTCTCTGTCGAGGCAT-GAAGTCACTGAAGATATCCAAATGTTTGGG 2334
Query 2769 GGACTTATGAAAGCCACAGGCTACAACT-GGAACTCAGGAATGGCC---CGAAGGAGCTC 2824
|| ||||||||| || || ||||| || ||| || ||| |||| ||| ||| |||
Sbjct 2335 GGGCTTATGAAAACCGGAGACTACA-CTTGGAGTTCTGGATTGGCTGTTCGACGGAACTC 2393
Query 2825 AAACCGAGGAAGAAAACGACTGGTCAGC-AACATT-GACAGAGCTCCGGTTTGCTCC-TC 2881
||| | | ||||||||||||||| | |||| | || |||||| || ||| || ||
Sbjct 2394 AAA---A--A-GAAAACGACTGGTCA-CTAACACAAGCCA-AGCTCCAGTATGC-CCGTC 2444
Query 2882 TTTGGCACAGCCAATGAATAACAGTAGTGTACAAATGGTGGGACTGGAAGATAGGA-GCC 2940
|||| |||||||||||| | || || | || ||| |||||| ||||| || | ||
Sbjct 2445 AATGGCGCAGCCAATGAATGAGAGC-GTAT-CAG-TGGGGGGACTTGAAGACAGTAAGC- 2500
Query 2941 TTACAGGGTGGGGA-AATGCAACCAGAAGACCAAGGCGACATAGGTGCCCT---GCAGGT 2996
| ||||| |||||| || ||||| |||||||| ||| |||| ||||||||| ||||||
Sbjct 2501 TCACAGGATGGGGACAA-GCAACAAGAAGACCGAGGAGACAAAGGTGCCCTCCTGCAGGT 2559
Query 2997 ACTCCCCCAACAGTGCTATTAAC 3019
| |||| |||| ||| | |||||
Sbjct 2560 AATCCCGCAACCGTGATCTTAAC 2582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123002075936
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5