BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69370.1
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926231 jgi|Araly1|926231|scaffold_201792.1 1509 0.0
Ahg476065 jgi|Araly1|476065|fgenesh2_kg.2__1195__AT1G69380.1 180 3e-44
> Ahg926231 jgi|Araly1|926231|scaffold_201792.1
Length=1002
Score = 1509 bits (817), Expect = 0.0
Identities = 948/1008 (94%), Gaps = 22/1008 (2%)
Strand=Plus/Plus
Query 122 tcttcctcttttgattctccGATGGAGGCTAAGTTACTCAAACCCGCGTTTTACAATTCC 181
|||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 2 TCTT-CTCTTTTGATTCTCCGATGGAGGCTAAGCTACTCAAACCCGCGTTTTCCAATTCC 60
Query 182 CCAAACCTCAATCTTACGAATTCTTCAAGACTCATCTCGCGATTATCAATCTGGAACGAT 241
|||| ||||||||| |||||||||||| || |||||||| | ||||||||| ||||| |
Sbjct 61 CCAAGCCTCAATCTCGCGAATTCTTCAAAACCCATCTCGCAAGTATCAATCTTGAACGGT 120
Query 242 AAATCAAAAG-TTGGACTATCTTCTGGGTCTCTCTT-CCTCCGTCTCTCCGCAGCTTCTC 299
||||| | | |||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 121 AAATC-GAGGTTTGGACTA---TCTGGGTCTCT-TTCCCTCCGTCTCTCCGCAGCTTCTC 175
Query 300 CGATCCGATACTCTAGGGGGCTACTAAGGGTAGATGAGAGTGAGTATTTGAAACTTGAAA 359
|||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||| |
Sbjct 176 CGATCCGATACTCTAGGGGGCTACTACGGGTTGATGAGAGTGAGTATTTGACACTTGACA 235
Query 360 GCATTAGACACTCTTTGATTCGTCAAGAGGACAGTATTATCTTTAATCTTCTTGAACGAG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 GCATTAGACACTCTTTGATTCGTCAAGAGGACAGTATTATCTTTAATCTTCTTGAACGAG 295
Query 420 CTCAGTATCGCTACAACGCTGATACTTATGACGAGGATGCCTTTACTATGGAAGGGTTTC 479
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 296 CTCAGTATCGCTACAACGCTGATACGTATGACGAGGATGCCTTTACTATGGAAGGTTTTC 355
Query 480 AAGGATCTTTAGTTGAGTTTATGGTCAGAGAAACTGAAAAGCTTCACGCAAAGGTGGACA 539
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 AAGGATCTTTGGTTGAGTTTATGGTCAGAGAAACTGAAAAGCTTCACGCAAAGGTGGACA 415
Query 540 GGTACAAGAGTCCTGATGAGCATCCCTTTTTCCCACAATGCTTGCCTGAACCTATCCTTC 599
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 416 GGTACAAGAGTCCTGATGAGCATCCCTTTTTCCCACAATGCTTGCCTGAGCCTATTCTTC 475
Query 600 CTCCTATTCAATACCCACAGGTTTTGCATCGTTGCGCCGAATCGATAAACATCAACAAGA 659
|||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 476 CTCCGATTCAATACCCACAGGTTTTGCATCATTGCGCCGAATTGATAAACATCAACAAGA 535
Query 660 AGGTGTGGAATATGTATTTCAAACACCTTCTCCCCAGACTGGTCAAGCCAGGGGATGACG 719
|||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 536 AGGTGTGGAATATGTATTTCAAGCACCTTCTTCCTAGACTGGTCAAGCCAGGGGATGACG 595
Query 720 GTAATTGTGGTTCAGCTGCTCTCTGTGACACAATGTGTTTGCAG--A------T--A--C 767
|||||||||| ||||||||||||||||||||||||||||||||| | | | |
Sbjct 596 GTAATTGTGGCTCAGCTGCTCTCTGTGACACAATGTGTTTGCAGGCAAGAAGCTTGATAC 655
Query 768 TTTCAAAGAGAATTCACTTTGGTAAATTTGTTGCTGAAGCCAAGTTTCGTGAAAATCCTG 827
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 656 TTTCAAAGAGAATTCACTTTGGTAAATTTGTTGCTGAGGCCAAGTTTCGTGAAAATCCTG 715
Query 828 CTGCCTATGAAACAGCTATCAAAGAACAAGACCGGACACAGCTGATGCAACTTCTAACGT 887
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 716 CTGCCTATGAAACAGCTATCCGAGAACAAGACCGGACACAGCTGATGCGACTTCTAACGT 775
Query 888 ACGAAACGGTTGAAGAAGTAGTCAAGAAGAGAGTTGAGATCAAAGCCAGAATTTTTGGTC 947
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 776 ATGAAACGGTTGAAGAAGTAGTCAAGAAGAGAGTTGAGATCAAAGCCAGAATTTTCGGTC 835
Query 948 AAGACATAACGATTAACGACCCAGAAACTGAAGCTGATCCTTCCTACAAAAT-ACAACCT 1006
||||||||||||| |||||||||||||||| ||||||||||||||||||||| | |||||
Sbjct 836 AAGACATAACGATCAACGACCCAGAAACTGGAGCTGATCCTTCCTACAAAATTA-AACCT 894
Query 1007 AGCTTAGTTGCAAAACTCTATGGAGAAAGGATCATGCCCCTCACAAAGGAAGTCCAAATT 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 AGCTTAGTTGCAAAACTCTATGGAGAAAGGATCATGCCCCTCACAAAGGAAGTCCAAATT 954
Query 1067 GAGTACTTGCTTAGAAGACTGGATTAATGTTTTCAAAGAAGGAAGCAT 1114
||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 955 GAGTACTTGCTTAGAAGGCTGGATTAATGTTTTCAAAGAAGGAAGCAT 1002
> Ahg476065 jgi|Araly1|476065|fgenesh2_kg.2__1195__AT1G69380.1
Length=1368
Score = 180 bits (97), Expect = 3e-44
Identities = 114/122 (93%), Gaps = 1/122 (1%)
Strand=Plus/Minus
Query 1101 AAAGAAGGAAGCATAACATTTGTATTGATCCTATTTTTCCGAAAACCATAATGTTGACAT 1160
||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||
Sbjct 1368 AAAGAAGGAAGCATAACATTTGTTTTGATCCTA-ATTTCCAAAAACCATAATGTTGACAT 1310
Query 1161 AAGCTGCGCAAGCTAGCAAGTCAAGTTGATTTTATTACAGAAGGACCTAAACAAATGAAC 1220
||||||||||||||||| ||||||||||||||||||||||||| | | ||||||||||||
Sbjct 1309 AAGCTGCGCAAGCTAGCGAGTCAAGTTGATTTTATTACAGAAGAATCAAAACAAATGAAC 1250
Query 1221 TT 1222
||
Sbjct 1249 TT 1248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119925412
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5