BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69380.1
Length=1460
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476065 jgi|Araly1|476065|fgenesh2_kg.2__1195__AT1G69380.1 1967 0.0
> Ahg476065 jgi|Araly1|476065|fgenesh2_kg.2__1195__AT1G69380.1
Length=1368
Score = 1967 bits (1065), Expect = 0.0
Identities = 1236/1317 (94%), Gaps = 18/1317 (1%)
Strand=Plus/Plus
Query 156 TTCAATTTTGATTTCATTGAATGGGTAAATGGAGAGCAGTAGCTGCTCTTCTTCTTCGTA 215
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 TTCAATTTTGATTTCTTTGAATGGGTAAATGGAGAGCAGTAGCTGCTCTTCTTCTTCGTA 116
Query 216 ATCAATTACTCAATTCTTCAAAAAGACTAAACCTTTCTTCTTCTCCATGTGTTTCGAAAC 275
||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||
Sbjct 117 ATCAATTACTCAATTCTTCAAAAAGACTAAACC--T-TTCTTCTCCATATGTTTCGAAAC 173
Query 276 A---CCCAACGATTGGTTTAGCTTCTCGCTTTCTCAATTTCCGACACTTTTCAGCGTTCC 332
| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 174 ACCCCCCAGCGATTGGTTTAGCTTCTCGCTTTCTCGATTTCCGACACTTTTCAGCGTTCC 233
Query 333 CTTCTCCGATTTCGATTTACAACAATGACTCTGATTCTGGGTCGAATGATGCATATCAAA 392
| |||||||||||||||||||||||||| |||||||||||||| | |||||| |||||||
Sbjct 234 CGTCTCCGATTTCGATTTACAACAATGATTCTGATTCTGGGTCTACTGATGCGTATCAAA 293
Query 393 ACTATGAATTTGGAACAGAGGCAGAGGAAGCACTAGGCAAAATCCCTATCAAAGCCTATT 452
||||||||||||||||| | | ||| |||| |||||| ||||||||||||||||||||||
Sbjct 294 ACTATGAATTTGGAACACATGAAGAAGAAGAACTAGGGAAAATCCCTATCAAAGCCTATT 353
Query 453 TTCTCAGTACTAGTATTGATTTGAAGGCAATGCAAGCTGAGAACTTATGCAATGTTGTTC 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TTCTCAGTACTAGTATTGATTTGAAGGCAATGCAAGCTGAGAACTTATGCAATGTTGTTC 413
Query 513 CTCCTACTTCACGTTCTACTAATTATATTGCCCTCAAATTTTCGGATTTTACCCCTTCTG 572
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 414 CTCCTACTTCACGTTCTACTAATTCTATTGCCCTCAAATTTTCGGATTTTACACCTTCTG 473
Query 573 GAATCTATAGTTTGGACGAGAGGGAGAGTGTAAGCAACTGCAAGTTCATGGTTGTCTTTC 632
||||| ||| | |||||||| |||||||||||||||||||| |||||||||||| ||||
Sbjct 474 GAATCCATACTATGGACGAGCGGGAGAGTGTAAGCAACTGCCGGTTCATGGTTGTTTTTC 533
Query 633 AATATGGTTCTGCTATTCTTTTCAATGTTGATGATAATGATGTTGACCGTTATCTCGACA 692
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 AATACGGTTCTGCTATTCTTTTCAATGTTGATGATAATGATGTTGACCGTTATCTCGACA 593
Query 693 TTGTTCGTAGACATGCTTCTGGATTGCTTACAGAAATGAGAAAAGATGATTATGCTGTGA 752
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 594 TTGTTCGTAGACATGCTTCTGGATTGCTTACGGAAATGAGAAAAGATGATTATGCTGTGA 653
Query 753 AGGAGAAGCCTTTGCTGATTGAGGAAATGAAAGGTGGCCCTGACTACATTGTTCTCAAAA 812
|||||||||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||
Sbjct 654 AGGAGAAGCCTTTGTTGACTGAGGAAATGAAAGGTGGCCATGACTACATCGTTCTCAAAA 713
Query 813 CTTTGGATACTAATAGCATCCGTATAATTGGGAGTGTGCTCGGACAAAGTATTGCTTTGG 872
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 714 CTTTGGATACTAATAGCATACGTATAATTGGGAGTGTGCTCGGGCAAAGTATTGCATTGG 773
Query 873 ATTACTCTGTTTCTCAGGTTAACAAGTTGGTGGAAGAGTTTGCTGATATAAACCGTTCAA 932
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 774 ATTACTTTGTTTCTCAGGTTAACAAGTTGGTGGAAGAGTTTGCCGATATAAACCGTGCAA 833
Query 933 TGGCGAAAACCGGAACATTCACAATGACCAGGAAAAAGCTCTTCCAACTTGTAGGGAAGG 992
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TGGCGAAAACAGGAACTTTCACAATGACCAGGAAAAAGCTCTTCCAACTTGTAGGGAAGG 893
Query 993 CGAATTCTAATATAGCCGATGTGATTCTCAAAGTTGGTTTGTTTGAGAGATCCGAGATTG 1052
| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 CAAATTCTAATCTAGGCGATGTGATTCTCAAAGTTGGTTTGTTTGAGAGATCCGAGATTG 953
Query 1053 CTTGGAGAGAAGCTAGATATGCTCAGATATACGAGTACCTAAGAGAAGAGTACGAGATCT 1112
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 954 CTTGGAGAGAGGCTAGATATGCTCAGATATACGAGTACCTAAGAGAAGAGTACGAGGTCA 1013
Query 1113 CTCAGAGATTTGGGGATCTAGACTATAAGCTAAAGTTTATAGAGCACAACATTCATTTCC 1172
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 CTCAGAGATTTGGAGATCTCGACTATAAGCTAAAGTTTATAGAGCACAACATTCATTTCC 1073
Query 1173 TCCAAGAGGTGATGCAGAACCGACAATCAGATCTTTTAGAATGGTGCATTATCTTTTTAC 1232
||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1074 TCCAAGAGGTGCTGCAGAACCGACGATCAGATCTTTTAGAATGGTGCATTATCTTCTTAC 1133
Query 1233 TGGCCATTGAAAACGCAATAGGCATTTACGAGATTGTTCGAGAATCCGCAGGAGCTTCAC 1292
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1134 TGACCATTGAAAACGCAATAGGCATTTACGAGATTCTTCGAGAATCCGCAGGAGCTTCAC 1193
Query 1293 TCTGATGCTACAAAAGTATAAATTCATTGTAGTGAACTCAAA-TTC----AA--G---TT 1342
||||||||||||||| || || | |||||||| ||| ||||| ||| || | ||
Sbjct 1194 TCTGATGCTACAAAATTACAAGT-CATTGTAGAGAATTCAAAATTCTGTGAACTGAAGTT 1252
Query 1343 CATTTGTTTAGGTCCTTCTGTAATAAAATCAACTTGACTTGCTAGCTTGCGCAGCTTATG 1402
||||||||| | | ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1253 CATTTGTTTTGATTCTTCTGTAATAAAATCAACTTGACTCGCTAGCTTGCGCAGCTTATG 1312
Query 1403 TCAACATTATGGTTTTCGGAAAAATAGGATCAATACAAATGTTATGCTTCCTTCTTT 1459
|||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct 1313 TCAACATTATGGTTTTTGGAAAT-TAGGATCAAAACAAATGTTATGCTTCCTTCTTT 1368
Score = 99.0 bits (53), Expect = 9e-20
Identities = 55/56 (98%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 10 ATTTGATTAGGGGACTGTGGTCACCGGCGGCGAGAACCAAGGCTTCTTCGTAACCA 65
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTTGATTAGGGAACTGTGGTCACCGGCGGCGAGAACCAAGGCTTCTTCGTAACCA 56
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54621411330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5