BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69400.1
Length=1225
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476068 jgi|Araly1|476068|fgenesh2_kg.2__1198__AT1G69400.1 1537 0.0
> Ahg476068 jgi|Araly1|476068|fgenesh2_kg.2__1198__AT1G69400.1
Length=1149
Score = 1537 bits (832), Expect = 0.0
Identities = 1027/1117 (92%), Gaps = 29/1117 (3%)
Strand=Plus/Plus
Query 53 TCTGGGTTTG--AAATATGAGCGGAGATAGACTTGAATTTGAAAACCCTATAGAGGATGC 110
|||||| ||| ||| |||||||||||| ||||| ||||||||||||||||||| |||||
Sbjct 35 TCTGGG-TTGAAAAACATGAGCGGAGATCGACTTCAATTTGAAAACCCTATAGAAGATGC 93
Query 111 GGTTTCGAGGCTCAGATTCTCCCCTCAATCAAACAATCTCCTCGTTGCTTCTTGGGATTC 170
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 94 GGTTTCGAGACTCAGATTCTCCCCTGAATCAAACAATCTCCTCGTTGCTTCTTGGGATTC 153
Query 171 TTATCTGAGATTGTATGATGTGGAGAGCTCTTCGCTAAGTCTTGAATTAAACTCTCAAGC 230
|||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 154 TTATCTGAGATTGTATAATGTGGAGAGCTCTTCGCTAAGTCTGGAATTGTACTCTCAAGC 213
Query 231 TGCTCTTCTTGATTGTTGTTTCGAGAATGAATCAACTTCATTTACCTCTGGTTCTGATGG 290
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 214 TGCTCTTCTTGATTGTTGTTTCGAGAATGAATCAACTTCATTTACCTCTGGTTCCGATGG 273
Query 291 ATTCATCCGAAGGTATGATTTAAACGCTGGAACAGTTGATACAATTGGAAGGCATGATGA 350
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 274 ATTCATCCGAAGGTATGATTTAAACGCTGGAACAGTTGATACAATTGGAAGACATGACGA 333
Query 351 CATTTCAACATCCATTGTCTACTCTTATGAAAAAGGTGAAGTTATCTCGACTGGGTTTGA 410
|||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 334 CATTGCAACATCCATTGTCTACTCTTATGAAAAAGGTGAAGTTATATCTACTGGGTTTGA 393
Query 411 TGAGAAGATCAAATTCTGGGATACAAGACAAAGAGAAAGTCTTGTGTTTTCGACTGATGC 470
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 394 TGAGAAGATCAAATTCTGGGATACAAGAAAAAGAGAAAGTCTTGTGTTTTCGACTGATGC 453
Query 471 TGGTGGAGCAGTGGGATGTGTCACTGTATCTGGAAACAACTTAGTTGTTTGTGTGGACGC 530
||||| ||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 454 TGGTGCAGCAGTGGGTTGTATCACTGTATCTGGCAACAACTTAGTTGTTTGTGTGGACGC 513
Query 531 ATCGATGCATATATACGATTTACGTAACTTAGATGAAGCTTTTCAATCGTATGCATCCCA 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 ATCGATGCATATATACGATTTACGTAACTTAGATGAAGCTTTTCAATCGTATGCATCCCA 573
Query 591 AGTGGAGGTGCCAATCAGATGTATCACCTCTGTACCTTATTCCAGAGGATATGCAGTTGG 650
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 574 AGTGGAGGTGCCAATCAGTTGTATCACCTCTGTACCTTATTCCAGAGGATATGCAGTTGG 633
Query 651 GTCAGTAGACGGACGAGTAGCTGTGGATTTCCCCAATACATCATGCTCCAGTGAGATTAA 710
|||||| || |||| |||||| || |||||| | |||| || ||||||| |||||| ||
Sbjct 634 GTCAGTTGATGGACAAGTAGCCGTAGATTTCTCGGATACGTCGTGCTCCAATGAGATAAA 693
Query 711 ATACAGTTTCCGATGCCATCCCAAGAGTAGGAATGGAAGACTTGATGGTGTATGCATAAA 770
||||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||
Sbjct 694 ATACAGTTTCCGATGCCATCCCAAGTGTAGGAACGGCAGACTCGATGGTGTATGCATAAA 753
Query 771 TGCAATCGAATTCAGTCCATGTGGGTCAGGGACTTTTGTAACAGGTGACAATGAAGGATA 830
|||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||
Sbjct 754 TGCAATCGAATTCAGTCCATGTGGGTCAGGGACTTTCGTAACAGGAGACAACGAAGGCTA 813
Query 831 CGTGATCTCATGGAATGCTAAAAGCAGAAGAAGACTCAATGAGTTGCCAAGGTACTCAAA 890
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 814 CGTGATCTCATGGAATGCTAAAAGCAGAAGAAGACTCTTTGAGTTGCCAAGGTACTCAAA 873
Query 891 TAGCATCGCGTCTTTAGCATTTGACCACACTGGAGAACTCTTGGCCATTGCATCAAGCCA 950
|||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 874 TAGCATTGCGTCTTTAGCATTTAACCACACTGGAGAACTCTTGGCTATTGCATCAAGCCA 933
Query 951 CACTTACCAAGATGCTAAAGAGAA-G--GAAGAAGCTCCTCAAGTGTTCATACACAGGCT 1007
|||||||||||| ||||||||||| | |||||||||||||||||||||||||| || |
Sbjct 934 CACTTACCAAGAAGCTAAAGAGAATGAAGAAGAAGCTCCTCAAGTGTTCATACAAAGA-T 992
Query 1008 T-TGAAAGATTCG-TAAGCTTCTTGAATCTCAGTGTCTACTTGTATC-TATCTAGT-TAt 1063
| ||||||||| | || ||||||||||||||||||||||||||||| |||||| | |||
Sbjct 993 TCTGAAAGATTTGCTA-GCTTCTTGAATCTCAGTGTCTACTTGTATTGTATCTA-TCTAT 1050
Query 1064 ttttttGTGTGTTTT-TGG-TAG-CACGTTTTAGCTTGATCTCAGAACTGACTCGTGTCA 1120
||||| || | |||| | | | | || ||| || || |||||||||||||| | ||
Sbjct 1051 TTTTT-GTTTATTTTATAGCTTGACAAGTT--AG-TTCTTCTCAGAACTGACT--T--CA 1102
Query 1121 ACCAACATGTAATGATTGTATCTCTCACGTCTCTTTA 1157
|| | || ||||||||||||||||| |||| ||||
Sbjct 1103 AC-A---TGCAATGATTGTATCTCTCAAGTCT-TTTA 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45747500400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5