BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69410.1
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926235 jgi|Araly1|926235|scaffold_201796.1 822 0.0
Ahg471555 jgi|Araly1|471555|fgenesh2_kg.1__1509__AT1G13950.1 377 5e-104
> Ahg926235 jgi|Araly1|926235|scaffold_201796.1
Length=517
Score = 822 bits (445), Expect = 0.0
Identities = 491/513 (96%), Gaps = 4/513 (1%)
Strand=Plus/Plus
Query 87 ATTTCG-CTGAATCATGTCAGACGACGAGCATCACTTCGAATCCAGCGACGCCGGAGCTT 145
|||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 7 ATTTCGATTGAATCATGTCGGACGACGAGCACCACTTCGAATCCAGCGACGCCGGAGCTT 66
Query 146 CTAAGACTTATCCTCAACAAGCCGGTAACATTCGTAAAGGTGGTCACATCGTCATCAAGG 205
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 67 CGAAGACTTATCCTCAACAAGCCGGTAACATCCGTAAAGGTGGTCACATCGTCATCAAGG 126
Query 206 GACGTCCCTGCAAGGTGGTTGAGGTATCGACTTCGAAGACTGGGAAGCATGGTCACGCCA 265
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 127 GACGTCCCTGCAAGGTGGTTGAGGTATCAACTTCAAAGACTGGGAAGCATGGTCACGCCA 186
Query 266 AGTGTCACTTTGTTGCCATTGATATCTTTACTTCTAAGAAGCTTGAAGATATCGTTCCTT 325
| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 187 AATGTCATTTTGTTGCCATTGATATCTTCACTTCTAAGAAGCTTGAAGATATCGTTCCTT 246
Query 326 CTTCCCACAATTGTGATGTTCCACATGTGAATCGTGTTGATTATCAGTTGATTGATATCT 385
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 247 CTTCCCACAATTGTGATGTTCCACATGTGAATCGTGTTGATTACCAGTTGATTGATATCT 306
Query 386 CTGAAGATGGCTTTGTTAGTCTTCTTACTGATAATGGTAGCACTAAGGATGATCTGAAGC 445
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 307 CTGAAGATGGCTTTGTTAGTCTTCTTACTGATAATGGTAGTACTAAGGATGATCTGAAGC 366
Query 446 TGCCAACAGATGAAGCTTTACTCACACAGCTCAAGAATGGATTTGAGGAGGGTAAGGATA 505
||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 367 TGCCAACTGATGAAGCTTTGCTCACACAGCTCAAGAATGGATTTGATGAGGGCAAGGATA 426
Query 506 TTGTTGTGTCTGTCATGTCTGCAATGGGAGAGGAGCAGATGTGTGCTCTCAAGGAAGTTG 565
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 427 TAGTTGTGTCTGTCATGTCTGCAATGGGAGAGGAACAGATGTGTGCTCTCAAGGAAGTTG 486
Query 566 GTCCCAAGTAATAATAATAAGTAAGCATTCTCT 598
||||||||||||||||| |||||||||||||
Sbjct 487 GTCCCAAGTAATAATAA---GTAAGCATTCTCT 516
> Ahg471555 jgi|Araly1|471555|fgenesh2_kg.1__1509__AT1G13950.1
Length=661
Score = 377 bits (204), Expect = 5e-104
Identities = 398/491 (81%), Gaps = 15/491 (3%)
Strand=Plus/Plus
Query 92 GCTG-AATCATGTCAGACGACGAGCATCACTTCGAATCCAGCGACGCCGGAGCTTCTAAG 150
|||| || |||||| ||||| |||||||| || || ||||| |||||||||||||| ||
Sbjct 20 GCTGAAACCATGTCCGACGAGGAGCATCATTTTGAGTCCAGTGACGCCGGAGCTTCCAAA 79
Query 151 ACTTATCCTCAACAAGCCGGTAA-CATTCGTAAAG-GTGGTCACATCGTCATCAAGGGAC 208
||||| || |||||||| || || ||| ||| ||| |||| |||||||||||| || |
Sbjct 80 ACTTACCCACAACAAGCTGG-AACCATCCGT-AAGAATGGTTTCATCGTCATCAAAGGTC 137
Query 209 GTCCCTGCAAGGTGGTTGAGGTATCGACTTCGAAGACTGGGAAGCATGGTCACGCCAAGT 268
||||||||||||| |||||||| || || || |||||||| ||||||||||| || || |
Sbjct 138 GTCCCTGCAAGGTTGTTGAGGTTTCAACGTCAAAGACTGGCAAGCATGGTCATGCTAAAT 197
Query 269 GTCACTTTGTTGCCATTGATATCTTTA-CTTCTAAGAAGCTTGAAGATATCGTTCCTTCT 327
|||| ||||| || || |||||||| | | | ||||| |||||||| || |||||||||
Sbjct 198 GTCATTTTGTAGCTATAGATATCTTCACCAGC-AAGAAACTTGAAGACATTGTTCCTTCT 256
Query 328 TCCCACAATTGTGATGTTCCACATGTGAATCGTGTTGATTATCAGTTGATTGATATCTCT 387
|||||||||||||||||||| ||||| || ||| ||||||||| ||||||| || |||
Sbjct 257 TCCCACAATTGTGATGTTCCTCATGTCAACCGTACTGATTATCAACTGATTGACATTTCT 316
Query 388 GAAGATGGCTTTGTTAGTCTTCTT-ACTGATAATGGTAGCACTAAGGATGATCTGAAGCT 446
|||||||| | ||| ||| || || ||||| ||||||||||| |||||||| || |||||
Sbjct 317 GAAGATGGATATGTCAGT-TTGTTGACTGACAATGGTAGCACCAAGGATGACCTCAAGCT 375
Query 447 GCCAACAGATGA-AGCTTTACTCACA-CAGCTCAAGAATGGATTTGAGGAGGGTAAGGAT 504
|| || ||||| | || | ||| || ||| |||||| ||| ||||| || || || |||
Sbjct 376 CCCTACTGATGACA-CTCTGCTC-CAACAGATCAAGAGTGGGTTTGATGATGGAAAAGAT 433
Query 505 ATTGTTGTGTCTGTCATGTCTGCAATGGGAGAGGAGCAGATGTGTGCTCTCAAGGA-AGT 563
| || ||| ||| ||||| || ||||||||||| ||||| |||||||||||| | |
Sbjct 434 CTAGTGGTGAGTGTGATGTCAGCTATGGGAGAGGAACAGATAAATGCTCTCAAGGACA-T 492
Query 564 TGGTCCCAAGT 574
|||||||||||
Sbjct 493 TGGTCCCAAGT 503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28325327331
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5