BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69420.2
Length=2064
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476070 jgi|Araly1|476070|fgenesh2_kg.2__1200__AT1G69420.1 2996 0.0
> Ahg476070 jgi|Araly1|476070|fgenesh2_kg.2__1200__AT1G69420.1
Length=2335
Score = 2996 bits (1622), Expect = 0.0
Identities = 1752/1816 (96%), Gaps = 4/1816 (0%)
Strand=Plus/Plus
Query 82 AGCATTTCTTCTT-GAGGAAAAATGAGGAAACATGGATGGCAGCTTCCATACCATCCTCT 140
|||| |||||||| ||||| | |||||||||||||||||||| ||||| |||||||||||
Sbjct 316 AGCA-TTCTTCTTAGAGGAGATATGAGGAAACATGGATGGCAACTTCCTTACCATCCTCT 374
Query 141 TCAGGTGGTGGCTGTTGCTGTGTTCTTGGCTTTAGGGTTTGCTTTCTATGTCTTCTTTGC 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 TCAGGTGGTGGCTGTTGCTGTGTTCTTGGCTTTAGGGTTTGCTTTCTATGTCTTCTTTGC 434
Query 201 TCCATTTGTTGGGAAGAAGATTCATCAGTACATTGCGATGGGCATTTACACTCCTCTGAT 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 TCCATTTGTTGGGAAGAAGATTCATCAGTACATTGCGATGGGCATTTACACTCCTCTGAT 494
Query 261 TACGTGTGTGGTTGGACTGTATATATGGTGTGCGGCTTCAGATCCTGCAGACCGTGGAGT 320
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 495 TACGTGTGTGGTTGGACTGTATATATGGTGTGCGGCTTCGGACCCTGCAGACCGTGGAGT 554
Query 321 TTTCCGGTCTAAGAAGTACCTTAAAATTCCTGAAAATGGGAAATTTCCTCTAGCAAAGGA 380
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 555 TTTCCGGTCGAAGAAGTACCTTAAAATTCCTGAAAATGGGAAATTTCCTCTATCAAAGGA 614
Query 381 TATAAAAGATGGATGTGGATCAGCTACAGGTGGTGCTAAATCTCATGATGGCACGTGTGT 440
|| ||||||||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 615 TACAAAAGATGGATGTGGATCAGCTACAGGTGGTGCTAAATCTCGTGATGGAACTTGTGT 674
Query 441 AGAGGATACAGAAAATGGAAGTAACAAGAAATTGGAGTCATCAGAAAGATCTTCTCTCCT 500
| ||||| ||||||||| || |||||||||| ||||||||||||||||||||||||||||
Sbjct 675 ACAGGATCCAGAAAATGAAACTAACAAGAAACTGGAGTCATCAGAAAGATCTTCTCTCCT 734
Query 501 GCGTTTGCTCTGCTCTCCTTGTGCATTGCTATGTAGTTGTTGCAGTGGAAAAGATGAATC 560
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 735 GCGTTTGCTCTGCTCTCCTTGTGCATTGCTCTGTAGTTGTTGCAGTGGAAGAGATGAATC 794
Query 561 TTCTGAGCAGATGAGTGAGGATGGGATGTTTTATTGCAGTCTGTGTGAAGTTGAGGTCTT 620
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 795 TTCTGAGCAGATGAGTGAGGATGGAATGTTTTATTGCAGTCTGTGTGAAGTTGAGGTCTT 854
Query 621 CAAATACAGCAAGCATTGCAGAGTTTGTGACAAATGTGTGGACCGTTTTGATCATCACTG 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 CAAATACAGCAAGCATTGCAGAGTTTGTGACAAATGTGTGGACCGTTTTGATCATCACTG 914
Query 681 CAGGTGGCTAAACAACTGCATTGGCAAGCGGAATTACCGAAAATTCTTCAGTCTTATGGT 740
||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 915 CAGGTGGCTAAACAACTGCATCGGCAAGCGGAATTACCGAAAATTCTTTAGCCTTATGGT 974
Query 741 ATCAGCTAtttttttGCTCATTATGCAATGGTCAACTGGGATTTTTGTGCTGGTATTATG 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 ATCAGCTATTTTTTTGCTCATTATGCAATGGTCAACTGGGATTTTTGTGCTGGTATTATG 1034
Query 801 TTTACTCCGAAGAAACCAATTTAATGCAGACATTGCCCTGAAGTTGGGAAGCAGCTTCTC 860
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 TTTGCTCCGAAGAAACCAATTTAATGCAGACATTGCCCTGAAGTTGGGAAGCAGCTTCTC 1094
Query 861 GCTAATTCCATTTGTTATAGTTGTTGGTGTCTGTACAGTATTAGCAATGCTGGCAACGTT 920
||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 1095 GCTAATTCCATTTGTTATAGTCGTTGGTGTCTGCACTGTATTAGCAATGCTGGCAACGTT 1154
Query 921 ACCACTTGCTCAGCTTTTCTTCTTCCACATTCTTCTCATTAAGAAGGGAATCAGTACATA 980
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1155 ACCACTTGCTCAGCTTTTCTTCTTCCATATTCTTCTCATTAAGAAGGGAATCAGTACATA 1214
Query 981 CGACTACATAGTTGCGCTTAGGGAGCAAGAGCAAGAACTAGAAGCTGGAGGCGGTCAACA 1040
||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1215 CGATTACATAGTTGCACTTAGGGAGCAAGAGCAAGAGCTAGAAGCTGGAGGTGGTCAACA 1274
Query 1041 GAGTCCTCAAATGTCAATGATCAGCTCATTTACTGGACTAAGCAGTGCAAGCTCCTTCAA 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1275 GAGTCCTCAAATGTCAATGATCAGCTCATTTACTGGACTAAGCAGTGCAAGCTCCTTTAA 1334
Query 1101 TACATTTCATCGTGGGGCATGGTGCACACCACCACGTTTGTTTCTTGAGGATCAGTTTGA 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 TACATTTCATCGTGGGGCATGGTGCACACCACCACGTTTGTTTCTTGAGGATCAGTTTGA 1394
Query 1161 CGTAGTCCCTCCAGAGAATGCTTCTGTAAGTTCATATGGGAAGAAGTCTGTTGTAGAGGA 1220
||| |||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 1395 CGTGGTCCCTCCAGAGAATGCTTCTGTAAGTTCATATGGGAAGAAGTCAGTGGTTGAGGA 1454
Query 1221 ACGTGTCAAGAAGAAGCCCCAACCTGTGAAGATTAGTCCTTGGACTCTAGCTCGTCTCAA 1280
||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 1455 ACGCGTCAAGAAGAAGCCCCAACCTGTGAAGATCAGTCCATGGACTCTAGCACGTCTCAA 1514
Query 1281 TGCAGAAGAAGTTTCAAAAGCAGCAGCAGAAGCAAGAAAGAAATCCAAAATAATCCAGCC 1340
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1515 TGCAGAAGAAGTTTCAAAAGCAGCAGCAGAAGCAAGAAAGAAATCCAAAATAATTCAGCC 1574
Query 1341 TGTGGCGAGACGGGAAAATCCATTTGTTGGCTTAGAAGCAAGCAGCAGCTTCGGAAGCAG 1400
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1575 TGTGGCGAGACGGGAAAATCCATTTGTTGGCTTAGAAGCAAGCAGCAGCTTTGGTAGCAG 1634
Query 1401 TGGCCGTAGAATGTTCCCAACAAAATATGAAGGTGTTAATAATAACGGGAAGCAGCGAAG 1460
|||||||||||||||||| |||||| |||| ||||||||||| |||||||||||||||
Sbjct 1635 CGGCCGTAGAATGTTCCCAGCAAAATTTGAATCTGTTAATAATAGCGGGAAGCAGCGAAG 1694
Query 1461 GCAATC-AAAGCGCATACGGTTACCAGCAGAACTACCTCTAGAACCGCTGATGAATGTTC 1519
|||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1695 GCAATCTAAA-CGCATACGGTTACCAGCTGAACTACCTCTAGAACCGCTGATGAATGTTC 1753
Query 1520 AGACAAAAGCAGCAATGGAGACATCAACTAGTTCAGGGCTAGCTCCACTTCAGCTAGAAG 1579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1754 AGACAAAAGCAGCAATGGAGACATCAACTAGTTCAGGGCTAGCTCCACTTCAGCTAGAAG 1813
Query 1580 CAAGAAGCGCGTTTCAGACAAGCCGGGCAATGTCAGGGTCTGGTAATGTTATGGTGACAT 1639
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1814 CAAGAAGCGCGTTTCAGACAAGCCGAGCAATGTCAGGGTCTGGTAATGTTATGGTGACCT 1873
Query 1640 CTTCACCAGAGAGCAGCTTAGACTCGCATGACATTCACCCGTTTAGAGTTTCGTCTGAAG 1699
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1874 CTTCACCAGAAAGCAGCTTAGACTCGCACGACATTCACCCGTTTAGAGTTTCGTCTGAAG 1933
Query 1700 CAGAGGATGCAGCGCAGCTTAATGGGTTCTCTTCTGCTGTTGGTCTGATGGGTCAACAGA 1759
||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 1934 CAGAGGATGCAGCACAGCTCAATGGGTTTTCTTCAGCTGTTGGTCTGATGGGTCAACAGA 1993
Query 1760 GAGGacaacaacaacaacaacaacTATCAATGATGATGATGCCATTGTCAAGGTCTACAA 1819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1994 GAGGACAACAACAACAACAACAACTATCAATGATGATGATGCCATTGTCAAGGTCTACAA 2053
Query 1820 GTGATGGCTATGATGCATCTGGTGGAGAAGACAGTGATCAGGTTCCTTCTAGAAACATCC 1879
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2054 GTGATGGTTATGATGCATCTGGTGGAGAAGACAGTGATCAGGTTCCTTCTAGAAACATCC 2113
Query 1880 ACAAATCAAGATGAGA 1895
||||||||||||||||
Sbjct 2114 ACAAATCAAGATGAGA 2129
Score = 130 bits (70), Expect = 4e-29
Identities = 98/111 (88%), Gaps = 3/111 (3%)
Strand=Plus/Plus
Query 1957 TGGCTGCTGCCTTCTATCAGGAAGAAGTCAACATTTGAGGATCTTGAAGGTATAAA-A-A 2014
|||||||||| ||| |||| ||| ||||||||||||||||||||||||| ||| | | |
Sbjct 2143 TGGCTGCTGCATTCGATCAAGAAAAAGTCAACATTTGAGGATCTTGAAGATATTATTACA 2202
Query 2015 -TGCCTGCCAAAAGCTCTTAGGAGAAGAGCACCAGAGACTTTTGAGAATTC 2064
|||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 2203 GTGCCTGCCAAGAGCTCTTAGGAGAAGAGCACCAGAGACTTTTGTGAGTTC 2253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77627919310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5