BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G69430.1 Length=1602 Score E Sequences producing significant alignments: (Bits) Value Ahg908520 jgi|Araly1|908520|Al_scaffold_0002_1601 1653 0.0 Ahg472743 jgi|Araly1|472743|fgenesh2_kg.1__2697__AT1G26650.1 712 0.0 > Ahg908520 jgi|Araly1|908520|Al_scaffold_0002_1601 Length=1047 Score = 1653 bits (895), Expect = 0.0 Identities = 1004/1055 (95%), Gaps = 13/1055 (1%) Strand=Plus/Plus Query 239 ATGGAAATGGGTTTATCTGGGATGATGAATCATGGAGGATCAAATTCAAAATTACGGAAA 298 ||||||||||||||||||||||||||||| || ||||| | |||||||| |||||| Sbjct 4 ATGGAAATGGGTTTATCTGGGATGATGAACCAAGGAGG-----A-TCAAAATTTCGGAAA 57 Query 299 TTTGAGATAGAatcatcatcatcatcaccatcatcatcCTCTGATCATAAGTTTCATTCG 358 ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 58 TTTGAGATAGAATCATCATCATCAT---CATCATCATCCTCTGATCATCAGTTTCATTCG 114 Query 359 ATGAATGCTCTTGAGATCTTGAGAGAAACCGTTAGAATTCTCCGGTATAATCTTGGTGCT 418 ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| || Sbjct 115 ATGAATGCTCTTGAGATCTTGAGAGAAACTGTTCGAATTCTCCGGTATAATCTTGGTTCT 174 Query 419 TTCATGTTAATCGCTCTTCTTTTGATCTGTCCTGTTTCCGCTATTCTATTACCAAACCTT 478 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| Sbjct 175 TTCATGTTAATCGCTCTTCTTTTGATCTGTCCTGTTTCCGCAATTCTGTTACCGAACCTT 234 Query 479 TTAGTTGATCAATCAGTTGTTAATTCACTTACAGTGAGGCTTCTCTTAGTTTCCAAATCA 538 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 235 TTAGTTGATCAATCAGTTGTTAATTCACTCACAGTGAGGCTTCTCTTAGTTTCGAAATCC 294 Query 539 AGTGGTCTTCCTTTATTGCCTTTTGTTAGAAACTCTTGTCAGAAATTCTCTGAGACAGCT 598 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 295 AGTGGTCTTCCTTTGTTGCCTTTTGTGAGAAACTCTTGTCAGAAATTCTCTGAGACAGCT 354 Query 599 GTTTCTTCTGCAATGTGTTTCCCTTTGTTCATCACTTTGTCACTCTTGTCTAGAGCTGCT 658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 355 GTTTCTTCTGCAATGTGTTTCCCTTTGTTCATCACTTTGTCACTCTTGTCTAGAGCTGCT 414 Query 659 GTGGTTTACTCTGTTGATTGCACTTATTCGAGGAAGAAAGTTGTGGTGACTAAGTT-TGT 717 |||||||||||||| |||||||||||||||||||| ||||||||| | |||||||| | | Sbjct 415 GTGGTTTACTCTGTGGATTGCACTTATTCGAGGAAAAAAGTTGTGATAACTAAGTTCT-T 473 Query 718 GGTGATAATGCAGAGACTATGGAAACGTCTTGTGATCACTTACTTGTGGATTTGTACTGT 777 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 474 GGTGATAATGCAGAGACTATGGAAACGTCTTGTGATCACTTACTTGTGGATTTGTACGGT 533 Query 778 GATTGTTGTTTGTCTCACTTCCTTCTGCGTGTTTCTCGTCGCGGTTTGTAGCTC-TTTCT 836 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | Sbjct 534 GATTGTTGTTTGTCTCACTTCCTTCTGCGTGTTTCTTGTCGCGGTTTGTAGCTCCTTT-T 592 Query 837 ATGTTCTCGGATTCTCTCCTGATTTTAATGCCTATGGAGCTATCTTAGTTGGTTTGGTGT 896 ||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 593 ATGTTCTTGGATTCTCTCCTGATTTCAATGCTTATGGAGCTATCTTAGTTGGTTTGGTGT 652 Query 897 TCTCAGTAGTGTTTGCAAATGCTATCATTATCTGTAACACCACGATCGTGATCTCGATTC 956 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 653 TCTCAGTAGTGTTTGCAAATGCTATCATTATCTGCAACACCACGATCGTGATCTCGATTC 712 Query 957 TTGAAGATGTGTCGGGGCCAGGAGCGTTGGTTAGAGCGAGTGATTTGATCAAAGGACAGA 1016 |||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 713 TTGAAGATGTTTCGGGGCCTCAAGCGTTGGTTAGAGCGAGTGATTTGATCAAAGGGCAGA 772 Query 1017 CTCAGGTTGGTTTGTTGATATTTCTAGGATCAACAATAGGGTTGACGTTTGTGGAAGGAT 1076 |||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 773 CTCAAGTTGGTTTATTGATATTTCTAGGATCAACAATAGGGTTAACGTTCGTGGAAGGAT 832 Query 1077 TGTTTGAGCATAGAGTGAAGAGTTTGAGTTATGGAGATGGTTCTTCGAGGTTATGGGAAG 1136 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 833 TGTTTGAGCATAGAGTGAAGAGTTTGAGTTATGGAGATGGGTCTTCGAGGTTATGGGAAG 892 Query 1137 GTCCACTACTTGTGGTGATGTATTCATTTGTGGTGCTTATTGATACAATGATGAGTGCAG 1196 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 893 GTCCACTACTTGTGGTGATGTATTCATTTGTAGTGCTTATTGATACAATGATGAGTGCAG 952 Query 1197 TGTTCTATTTTAGTTGCCGGTCTTATAGTATGGAAGCTGTTGAAGCTTTGGAAGCTTCTG 1256 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 953 TGTTCTATTTTAGTTGCCGGTCTTATAGCATGGAAGCTGTTGAAGCTTTGGAAGCTTCTG 1012 Query 1257 GAGAGATTGTGTCCCAAGATTTGTCCCTGCTTTAA 1291 ||||||||||||||||||||||||| ||||||||| Sbjct 1013 GAGAGATTGTGTCCCAAGATTTGTCTCTGCTTTAA 1047 > Ahg472743 jgi|Araly1|472743|fgenesh2_kg.1__2697__AT1G26650.1 Length=1329 Score = 712 bits (385), Expect = 0.0 Identities = 727/887 (82%), Gaps = 43/887 (5%) Strand=Plus/Plus Query 371 GAGATCTTGAGAGAAACCGTTAGAATTCTCCGGTATAATCTTGGTGCTTTCATGTTAATC 430 ||||||||||||||||| ||| |||| |||||||| |||||||||||||||||| ||| | Sbjct 335 GAGATCTTGAGAGAAACAGTTCGAATCCTCCGGTACAATCTTGGTGCTTTCATGATAA-C 393 Query 431 -GCT-CTTCTTTTGATCTGTCCTGTTTCCGCTATT-CTATTACCAAACCTTTTAGTTGAT 487 || | | |||||||||||||||| || ||| || || |||||||| ||||||||||| Sbjct 394 TACTGC-TGTTTTGATCTGTCCTGTATCTGCT-TTACTCTTACCAAATTTTTTAGTTGAT 451 Query 488 CAATCAGTTGTTAATTCACTTACAGTGAGGCTTCTCTTAGTTTCCAAA-TCAAGTGGTCT 546 |||||| | || || ||| ||||||| |||||| |||| | |||| ||||||||||| Sbjct 452 CAATCACTAGTGAACAAACTCACAGTGAAGCTTCTTTTAG-TGGCAAAGTCAAGTGGTCT 510 Query 547 TCCTTTATTGCCTTTTGTTAGAA-ACTCTTGTCAGAAATTCTCTGAGACAGCTGTTTCTT 605 |||||| ||||||||| | || ||||||||||||||||| |||| || |||||||| | Sbjct 511 TCCTTTGCAGCCTTTTGTCA-AACACTCTTGTCAGAAATTCGCTGAAACTGCTGTTTCGT 569 Query 606 CTGCAATGTGTTTCCCTTTGTTCATCACTTTGTCACTCTTGTCTAGAGCTGCTGTGGTTT 665 ||||||||||||||||||||||||||||| |||| || ||||||| ||| |||||| ||| Sbjct 570 CTGCAATGTGTTTCCCTTTGTTCATCACTGTGTCTCTATTGTCTAAAGCAGCTGTGATTT 629 Query 666 ACTCTGTTGATTGCACTTATTCGAGGAAGAA-AGTTG-TGGT-GACTAAGTT-TGTGGTG 721 |||| || ||||||||||| |||||| | || ||||| | | | | ||||| | ||| | Sbjct 630 ACTCAGTGGATTGCACTTACTCGAGGGA-AATAGTTGATATTAG-C-AAGTTCT-TGG-G 684 Query 722 ATA-AT-GCAGA-GACTATGGA-AACGTCTTGTGATCACTTAC-TTGTGGATTTGTACTG 776 || || ||||| || |||||| || | ||||| |||||||| || |||||||| | | Sbjct 685 -TACATTGCAGAAGA-TATGGAGAA-GAGTTGTGTTCACTTACCTT-TGGATTTGCATTC 740 Query 777 TGATTGTTGTTTGTCT-CACTTCCTTCTGCGTGT-TTCTCGTCGCGGTTTGTAGCTCTTT 834 ||||||||| ||| || ||||| ||||||||| | |||| || || | || || || || Sbjct 741 TGATTGTTGGTTG-CTTCACTTTCTTCTGCGT-TCTTCTTGTTGCAATCTGCAGTTCATT 798 Query 835 CTATGTTCTCGGATTCTCTCCTGATTTTAATGCCTATGGAGCTATCTTAGTTGGTTTGGT 894 || ||||||||| || ||||||||||| |||| |||||||| || ||||||||||| | Sbjct 799 CTCTGTTCTCGGCTTTTCTCCTGATTTCAATGTTTATGGAGCCATGTTAGTTGGTTTAGC 858 Query 895 GTTCTCAGTAGTGTTT-GCAAATGCTATCATTATCTGTAACACCACGATCGTGATCTCGA 953 ||||| ||||| ||| || || || || || ||||| |||||| |||| ||||||||| Sbjct 859 ATTCTCTGTAGT-TTTCGCTAACGCGATTATAATCTGCAACACCGCGATTGTGATCTCGG 917 Query 954 TTCTTG-AAGATGTGTCGGGGCCAGGAGCGTTGGTTAGAGCGAGTGATTTGATCAAAGGA 1012 || ||| ||||||| || ||| |||||| ||| | ||||| ||||||||||||||||| Sbjct 918 TT-TTGGAAGATGTTTCAGGGTTAGGAGCATTGATGAGAGCTAGTGATTTGATCAAAGGG 976 Query 1013 CAGACTCAGGTTGGTTTGTTGATATTTCTAGGATCAACAATAGGGTTGACGTTTGTGGAA 1072 |||| |||||||||||||||||| || || || || || |||| ||| ||||||||||| Sbjct 977 CAGATTCAGGTTGGTTTGTTGATGTTCCTTGGGTCGACGTTAGGATTGGCGTTTGTGGAA 1036 Query 1073 GGATTGTTTGAGCATAGAGTGAAGAGTTTGAGTTATGGAGATGGTTCTTCGAGGTTATGG 1132 ||||||||||| || |||||||||| |||||||||||||||| ||||||||||||||| Sbjct 1037 GGATTGTTTGATCACAGAGTGAAGAAAGTGAGTTATGGAGATGGGTCTTCGAGGTTATGG 1096 Query 1133 GAAGGTCCACTACTTG-TGGTGATGTATTCATTTGTGG-TGCTTATTGATACAATGATGA 1190 ||||| || || ||| || |||||||||| |||||| | ||||| ||| | ||||||| Sbjct 1097 GAAGGACCTCTT-TTGGTGTTGATGTATTCCTTTGTGACT-CTTATAGATTCGATGATGA 1154 Query 1191 GTGCAGTGTTCTATTTTAGTTGCCG-GTCT-T-ATAGTATGGAAGCT 1234 ||||||||||||||||||| || || || | | |||||||||||||| Sbjct 1155 GTGCAGTGTTCTATTTTAGCTGTCGAGTTTATTATAGTATGGAAGCT 1201 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60030226120 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5