BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69430.1
Length=1602
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908520 jgi|Araly1|908520|Al_scaffold_0002_1601 1653 0.0
Ahg472743 jgi|Araly1|472743|fgenesh2_kg.1__2697__AT1G26650.1 712 0.0
> Ahg908520 jgi|Araly1|908520|Al_scaffold_0002_1601
Length=1047
Score = 1653 bits (895), Expect = 0.0
Identities = 1004/1055 (95%), Gaps = 13/1055 (1%)
Strand=Plus/Plus
Query 239 ATGGAAATGGGTTTATCTGGGATGATGAATCATGGAGGATCAAATTCAAAATTACGGAAA 298
||||||||||||||||||||||||||||| || ||||| | |||||||| ||||||
Sbjct 4 ATGGAAATGGGTTTATCTGGGATGATGAACCAAGGAGG-----A-TCAAAATTTCGGAAA 57
Query 299 TTTGAGATAGAatcatcatcatcatcaccatcatcatcCTCTGATCATAAGTTTCATTCG 358
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 58 TTTGAGATAGAATCATCATCATCAT---CATCATCATCCTCTGATCATCAGTTTCATTCG 114
Query 359 ATGAATGCTCTTGAGATCTTGAGAGAAACCGTTAGAATTCTCCGGTATAATCTTGGTGCT 418
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||
Sbjct 115 ATGAATGCTCTTGAGATCTTGAGAGAAACTGTTCGAATTCTCCGGTATAATCTTGGTTCT 174
Query 419 TTCATGTTAATCGCTCTTCTTTTGATCTGTCCTGTTTCCGCTATTCTATTACCAAACCTT 478
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 175 TTCATGTTAATCGCTCTTCTTTTGATCTGTCCTGTTTCCGCAATTCTGTTACCGAACCTT 234
Query 479 TTAGTTGATCAATCAGTTGTTAATTCACTTACAGTGAGGCTTCTCTTAGTTTCCAAATCA 538
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 235 TTAGTTGATCAATCAGTTGTTAATTCACTCACAGTGAGGCTTCTCTTAGTTTCGAAATCC 294
Query 539 AGTGGTCTTCCTTTATTGCCTTTTGTTAGAAACTCTTGTCAGAAATTCTCTGAGACAGCT 598
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 295 AGTGGTCTTCCTTTGTTGCCTTTTGTGAGAAACTCTTGTCAGAAATTCTCTGAGACAGCT 354
Query 599 GTTTCTTCTGCAATGTGTTTCCCTTTGTTCATCACTTTGTCACTCTTGTCTAGAGCTGCT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GTTTCTTCTGCAATGTGTTTCCCTTTGTTCATCACTTTGTCACTCTTGTCTAGAGCTGCT 414
Query 659 GTGGTTTACTCTGTTGATTGCACTTATTCGAGGAAGAAAGTTGTGGTGACTAAGTT-TGT 717
|||||||||||||| |||||||||||||||||||| ||||||||| | |||||||| | |
Sbjct 415 GTGGTTTACTCTGTGGATTGCACTTATTCGAGGAAAAAAGTTGTGATAACTAAGTTCT-T 473
Query 718 GGTGATAATGCAGAGACTATGGAAACGTCTTGTGATCACTTACTTGTGGATTTGTACTGT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 474 GGTGATAATGCAGAGACTATGGAAACGTCTTGTGATCACTTACTTGTGGATTTGTACGGT 533
Query 778 GATTGTTGTTTGTCTCACTTCCTTCTGCGTGTTTCTCGTCGCGGTTTGTAGCTC-TTTCT 836
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
Sbjct 534 GATTGTTGTTTGTCTCACTTCCTTCTGCGTGTTTCTTGTCGCGGTTTGTAGCTCCTTT-T 592
Query 837 ATGTTCTCGGATTCTCTCCTGATTTTAATGCCTATGGAGCTATCTTAGTTGGTTTGGTGT 896
||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 593 ATGTTCTTGGATTCTCTCCTGATTTCAATGCTTATGGAGCTATCTTAGTTGGTTTGGTGT 652
Query 897 TCTCAGTAGTGTTTGCAAATGCTATCATTATCTGTAACACCACGATCGTGATCTCGATTC 956
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 653 TCTCAGTAGTGTTTGCAAATGCTATCATTATCTGCAACACCACGATCGTGATCTCGATTC 712
Query 957 TTGAAGATGTGTCGGGGCCAGGAGCGTTGGTTAGAGCGAGTGATTTGATCAAAGGACAGA 1016
|||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 713 TTGAAGATGTTTCGGGGCCTCAAGCGTTGGTTAGAGCGAGTGATTTGATCAAAGGGCAGA 772
Query 1017 CTCAGGTTGGTTTGTTGATATTTCTAGGATCAACAATAGGGTTGACGTTTGTGGAAGGAT 1076
|||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 773 CTCAAGTTGGTTTATTGATATTTCTAGGATCAACAATAGGGTTAACGTTCGTGGAAGGAT 832
Query 1077 TGTTTGAGCATAGAGTGAAGAGTTTGAGTTATGGAGATGGTTCTTCGAGGTTATGGGAAG 1136
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 833 TGTTTGAGCATAGAGTGAAGAGTTTGAGTTATGGAGATGGGTCTTCGAGGTTATGGGAAG 892
Query 1137 GTCCACTACTTGTGGTGATGTATTCATTTGTGGTGCTTATTGATACAATGATGAGTGCAG 1196
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 893 GTCCACTACTTGTGGTGATGTATTCATTTGTAGTGCTTATTGATACAATGATGAGTGCAG 952
Query 1197 TGTTCTATTTTAGTTGCCGGTCTTATAGTATGGAAGCTGTTGAAGCTTTGGAAGCTTCTG 1256
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 953 TGTTCTATTTTAGTTGCCGGTCTTATAGCATGGAAGCTGTTGAAGCTTTGGAAGCTTCTG 1012
Query 1257 GAGAGATTGTGTCCCAAGATTTGTCCCTGCTTTAA 1291
||||||||||||||||||||||||| |||||||||
Sbjct 1013 GAGAGATTGTGTCCCAAGATTTGTCTCTGCTTTAA 1047
> Ahg472743 jgi|Araly1|472743|fgenesh2_kg.1__2697__AT1G26650.1
Length=1329
Score = 712 bits (385), Expect = 0.0
Identities = 727/887 (82%), Gaps = 43/887 (5%)
Strand=Plus/Plus
Query 371 GAGATCTTGAGAGAAACCGTTAGAATTCTCCGGTATAATCTTGGTGCTTTCATGTTAATC 430
||||||||||||||||| ||| |||| |||||||| |||||||||||||||||| ||| |
Sbjct 335 GAGATCTTGAGAGAAACAGTTCGAATCCTCCGGTACAATCTTGGTGCTTTCATGATAA-C 393
Query 431 -GCT-CTTCTTTTGATCTGTCCTGTTTCCGCTATT-CTATTACCAAACCTTTTAGTTGAT 487
|| | | |||||||||||||||| || ||| || || |||||||| |||||||||||
Sbjct 394 TACTGC-TGTTTTGATCTGTCCTGTATCTGCT-TTACTCTTACCAAATTTTTTAGTTGAT 451
Query 488 CAATCAGTTGTTAATTCACTTACAGTGAGGCTTCTCTTAGTTTCCAAA-TCAAGTGGTCT 546
|||||| | || || ||| ||||||| |||||| |||| | |||| |||||||||||
Sbjct 452 CAATCACTAGTGAACAAACTCACAGTGAAGCTTCTTTTAG-TGGCAAAGTCAAGTGGTCT 510
Query 547 TCCTTTATTGCCTTTTGTTAGAA-ACTCTTGTCAGAAATTCTCTGAGACAGCTGTTTCTT 605
|||||| ||||||||| | || ||||||||||||||||| |||| || |||||||| |
Sbjct 511 TCCTTTGCAGCCTTTTGTCA-AACACTCTTGTCAGAAATTCGCTGAAACTGCTGTTTCGT 569
Query 606 CTGCAATGTGTTTCCCTTTGTTCATCACTTTGTCACTCTTGTCTAGAGCTGCTGTGGTTT 665
||||||||||||||||||||||||||||| |||| || ||||||| ||| |||||| |||
Sbjct 570 CTGCAATGTGTTTCCCTTTGTTCATCACTGTGTCTCTATTGTCTAAAGCAGCTGTGATTT 629
Query 666 ACTCTGTTGATTGCACTTATTCGAGGAAGAA-AGTTG-TGGT-GACTAAGTT-TGTGGTG 721
|||| || ||||||||||| |||||| | || ||||| | | | | ||||| | ||| |
Sbjct 630 ACTCAGTGGATTGCACTTACTCGAGGGA-AATAGTTGATATTAG-C-AAGTTCT-TGG-G 684
Query 722 ATA-AT-GCAGA-GACTATGGA-AACGTCTTGTGATCACTTAC-TTGTGGATTTGTACTG 776
|| || ||||| || |||||| || | ||||| |||||||| || |||||||| | |
Sbjct 685 -TACATTGCAGAAGA-TATGGAGAA-GAGTTGTGTTCACTTACCTT-TGGATTTGCATTC 740
Query 777 TGATTGTTGTTTGTCT-CACTTCCTTCTGCGTGT-TTCTCGTCGCGGTTTGTAGCTCTTT 834
||||||||| ||| || ||||| ||||||||| | |||| || || | || || || ||
Sbjct 741 TGATTGTTGGTTG-CTTCACTTTCTTCTGCGT-TCTTCTTGTTGCAATCTGCAGTTCATT 798
Query 835 CTATGTTCTCGGATTCTCTCCTGATTTTAATGCCTATGGAGCTATCTTAGTTGGTTTGGT 894
|| ||||||||| || ||||||||||| |||| |||||||| || ||||||||||| |
Sbjct 799 CTCTGTTCTCGGCTTTTCTCCTGATTTCAATGTTTATGGAGCCATGTTAGTTGGTTTAGC 858
Query 895 GTTCTCAGTAGTGTTT-GCAAATGCTATCATTATCTGTAACACCACGATCGTGATCTCGA 953
||||| ||||| ||| || || || || || ||||| |||||| |||| |||||||||
Sbjct 859 ATTCTCTGTAGT-TTTCGCTAACGCGATTATAATCTGCAACACCGCGATTGTGATCTCGG 917
Query 954 TTCTTG-AAGATGTGTCGGGGCCAGGAGCGTTGGTTAGAGCGAGTGATTTGATCAAAGGA 1012
|| ||| ||||||| || ||| |||||| ||| | ||||| |||||||||||||||||
Sbjct 918 TT-TTGGAAGATGTTTCAGGGTTAGGAGCATTGATGAGAGCTAGTGATTTGATCAAAGGG 976
Query 1013 CAGACTCAGGTTGGTTTGTTGATATTTCTAGGATCAACAATAGGGTTGACGTTTGTGGAA 1072
|||| |||||||||||||||||| || || || || || |||| ||| |||||||||||
Sbjct 977 CAGATTCAGGTTGGTTTGTTGATGTTCCTTGGGTCGACGTTAGGATTGGCGTTTGTGGAA 1036
Query 1073 GGATTGTTTGAGCATAGAGTGAAGAGTTTGAGTTATGGAGATGGTTCTTCGAGGTTATGG 1132
||||||||||| || |||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1037 GGATTGTTTGATCACAGAGTGAAGAAAGTGAGTTATGGAGATGGGTCTTCGAGGTTATGG 1096
Query 1133 GAAGGTCCACTACTTG-TGGTGATGTATTCATTTGTGG-TGCTTATTGATACAATGATGA 1190
||||| || || ||| || |||||||||| |||||| | ||||| ||| | |||||||
Sbjct 1097 GAAGGACCTCTT-TTGGTGTTGATGTATTCCTTTGTGACT-CTTATAGATTCGATGATGA 1154
Query 1191 GTGCAGTGTTCTATTTTAGTTGCCG-GTCT-T-ATAGTATGGAAGCT 1234
||||||||||||||||||| || || || | | ||||||||||||||
Sbjct 1155 GTGCAGTGTTCTATTTTAGCTGTCGAGTTTATTATAGTATGGAAGCT 1201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60030226120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5