BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69440.1
Length=3161
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476072 jgi|Araly1|476072|fgenesh2_kg.2__1202__AT1G69440.1 4625 0.0
> Ahg476072 jgi|Araly1|476072|fgenesh2_kg.2__1202__AT1G69440.1
Length=3066
Score = 4625 bits (2504), Expect = 0.0
Identities = 2850/3015 (95%), Gaps = 31/3015 (1%)
Strand=Plus/Plus
Query 133 CTTTTCCTCTCAGCAGCCATGGAAGAAAAAACTC--A-TCATCATCATCA-C--AGTACC 186
|||||||||||||||||||||||||||||||||| | |||||||||||| | ||||||
Sbjct 69 CTTTTCCTCTCAGCAGCCATGGAAGAAAAAACTCAGAGTCATCATCATCATCAGAGTACC 128
Query 187 AACAAACACATCCCTAGTTCCAAATCAAGAACACCTCTTCTCCACAAGCC-T-T-ATCAT 243
|||||||||| ||| | ||||||||||||||||||||||||||||||||| | | |||||
Sbjct 129 AACAAACACAACCCCAATTCCAAATCAAGAACACCTCTTCTCCACAAGCCTTATCATCAT 188
Query 244 CACCATGTTCAAACCAATCCTCCTCCTTTTCTTTTGCACCCTTCTTCTCACCAAAACCTC 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 CACCATGTTCAAACCAATCCTCCTCCTTTTCTTTTGCACCCTTCTTCTCACCAAAACCTC 248
Query 304 AATCTTGTTGCCTCAAATCTTCCTTCTAGctactactactattactactgctacttctac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 AATCTTGTTGCCTCAAATCTTCCTTCTAGCTACTACTACTATTACTACTGCTACTTCTAC 308
Query 364 tCTCAATTTCACAActctcttcctcctcctcctcctcctcatcttcttcctctttctcct 423
||||||||||||||||||||||||||||||||||||| | ||||| | |||| | | |
Sbjct 309 TCTCAATTTCACAACTCTCTTCCTCCTCCTCCTCCTC-T--TCTTC--C-TCTT-C-C-T 359
Query 424 cctcttcctcctttacttcctcttcctcctcctcACTCAATGACCCGTTTCCACAAATCT 483
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CCTC--C-TCCTTTACTTCCTCTTCCTCCTCCTCACTCAATGACCCGTTTCCACAAATCT 416
Query 484 CTCCCTGTTTCTCAAGTTGTGGAGAGAAAGCAGCAACACCAACAGAAGAAGAAGATACAA 543
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 417 CTCCCTGTTTCTCAAGTTGTGGAGAGAAAGCAGCAACAACAGCAGAAGAAGAAGATACAA 476
Query 544 GTTTCTAACAACAAAGTGAGTGGATCCATAGCAATAGAAGAAGCAGCATTAGTGGTTGCT 603
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 477 GTTTCTAACAACAAAGTGAGTGGGTCCATAGCAATAGAAGAAGCAGCATTAGTGGTTGCT 536
Query 604 AAAAGACCGGACTTTGGTGGTCAAGATGGTTCTGTCATTTATCTCCTCGCCAACCATTTT 663
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 537 AAAAGACCTGACTTTGGTGGTCAAGAAGGTTCTGTCATTTATCTCCTCGCCAACCATTTT 596
Query 664 CTTGTCAAGTTTGATTCGTCACAGAGGATTTACCATTACAATGTTGAGATATCTCCACAG 723
||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 597 CTTGTCAAGTTTGATTCTTCACAGAGGATTTACCATTACAACGTTGAGATCTCTCCTCAG 656
Query 724 CCTTCAAAGGAAATTGCTAGAATGATCAAACAGAAGCTTGTTGAGACAGATCGT-AATAG 782
|||||||||||||||||| | |||||||||||||||||||| ||||| ||| || |||||
Sbjct 657 CCTTCAAAGGAAATTGCTCGGATGATCAAACAGAAGCTTGTGGAGACCGAT-GTGAATAG 715
Query 783 CTTCTCTGGTGTTGTTCCGGCTTTTGACGGCAGGCAAAACATTTACAGCCCTGTGGAGTT 842
||||| ||||||||||| |||||||| || |||||||||||||| || |||||||||||
Sbjct 716 TTTCTCCGGTGTTGTTCCCGCTTTTGATGGTAGGCAAAACATTTATAGTCCTGTGGAGTT 775
Query 843 TCAGGGAGATAGGCTTGAGTTCTTTGTTAATCTCCCTATCCCATCTTGCAAGGCTGTGAT 902
|||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 776 TCAGGGCGATAGGCTTGAGTTCTTTGTTAATCTCTCTATCCCATCTTGCAAGGGTGTAAT 835
Query 903 GAATTACGGTGACTTGCGTGAGAAGCAACCTCAGAAGAAGATTGAGAAACTGTTTAGGGT 962
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GAATTACGGTGACTTGCGAGAGAAGCAACCTCAGAAGAAGATTGAGAAACTGTTTAGGGT 895
Query 963 TAATATGAAGCTTGTGTCCAAGTTTGATGGTAAAGAACAGAGAAAGGAAGGAGAGGATTG 1022
||| |||| ||||||||| ||||||||||| || |||||||||||||||||||| |||||
Sbjct 896 TAACATGAGGCTTGTGTCTAAGTTTGATGGGAAGGAACAGAGAAAGGAAGGAGAAGATTG 955
Query 1023 GGCTCCTCTGCCTCCAGAATACATTCATGCTCTTGATGTTATCTTGAGAGAGAATCCAAT 1082
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 956 GGCTCCTCTGCCTCCAGAATACATTCATGCTCTTGATGTTATCTTGAGGGAGAATCCAAT 1015
Query 1083 GGAGAAGTGTACATCGATCGGAAGATCGTTTTACTCGAGTTCTATGGGTGGATCTAAGGA 1142
|||||||||||| ||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 1016 GGAGAAGTGTACGTCGATTGGAAGATCGTTTTACTCGAGTTCTATGGGTGGTTCCAAGGA 1075
Query 1143 GATTGGAGGAGGAGCTGTTGGACTCAGAGGGTTTTTCCAGAGTCTTAGACATACTCAGCA 1202
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 1076 GATTGGAGGAGGAGCTGTTGGACTCAGAGGGTTTTTCCAGAGTCTTAGGCAGACTCAACA 1135
Query 1203 AGGTTTAGCACTTAACATGGATCTCTCAATCACAGCTTTCCATGAAAGTATTGGAGTAAT 1262
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1136 AGGTTTAGCACTTAACATGGATCTCTCAATCACAGCTTTCCATGAAAGCATTGGAGTAAT 1195
Query 1263 AGCTTACTTGCAGAAGCGGCTCGAGTTTCTTACGGACCTTCCTAGGAACAAAGGTAGAGA 1322
|||||||||||||||||||||||||||||| | ||||||| |||||||||||| ||||||
Sbjct 1196 AGCTTACTTGCAGAAGCGGCTCGAGTTTCTCAAGGACCTTTCTAGGAACAAAGATAGAGA 1255
Query 1323 ATTGAGTTTAGAGGAAAAGAGAGAAGTGGAGAAAGCACTTAAGAACATAAGAGTCTTTGT 1382
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 ATTGAGCCTAGAGGAAAAGAGAGAAGTGGAGAAAGCACTTAAGAACATAAGAGTCTTTGT 1315
Query 1383 TTGCCATAGAGAAACAGTTCAAAGGTATCGAGTTTATGGGTTAACAGAGGAAATTACGGA 1442
|||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||
Sbjct 1316 TTGCCATAGAGAAACAGTTCAAAGGTATCGGGTTTACGGGTTAACAGAGGAGATTACCGA 1375
Query 1443 GAATATATGGTTTCCTGATAGAGAAGGGAA-ATATCT-AAGGCTTATGAGTTACTTCAAA 1500
|||||||||||||| |||||||| ||||| | | || |||||||||||| ||||| |||
Sbjct 1376 TAATATATGGTTTCCGGATAGAGATGGGAAGA-A-CTTAAGGCTTATGAGCTACTTTAAA 1433
Query 1501 GATCATTATGGTTATGAGATTCAGT-TCAAGAACTTGCCGTGTCTGCAAATCAGTAGGGC 1559
||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||
Sbjct 1434 GATCATTATGGTTATGAGATTCAGTAT-AAGAACTTACCGTGTCTGCAAATCAGTAGGGC 1492
Query 1560 AAGACCTTGTTACCTTCCTATGGAGCTATGCATGATTTGTGAAGGTCAAAAGTTTCTTGG 1619
||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1493 AAGACCTTGCTACCTTCCTATGGAACTATGTATGATCTGTGAAGGTCAAAAGTTTCTTGG 1552
Query 1620 AAAGCTATCAGATGATCAAGCTGCAAAGATCATGAAAATGGGCTGCCAAAAACCTAATGA 1679
||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1553 GAAGCTTTCGGATGATCAAGCTGCAAAGATCATGAAAATGGGCTGCCAAAAACCAAATGA 1612
Query 1680 AAGGAAAGCTATTATTGATAAGGTTATGACAGGATCGGTCGGTCCATCGAGCGGAAACCA 1739
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1613 AAGGAAAGCTATTATTGATAAGGTTATGACAGGATTGGTCGGTCCATCGAGCGGAAACCA 1672
Query 1740 AACAAGAGAATTCAACCTTGAGGTTTCAAGAGAAATGACATTGCTGAAAGGAAGAATACT 1799
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 AACAAGAGAATTCAACCTCGAGGTTTCAAGAGAAATGACATTGCTGAAAGGAAGAATACT 1732
Query 1800 TCAGCCACCAAAGCTTAAACTTGACCGGCCAAGGAACCTTAAAGAAAGTAAAGTTTTTAA 1859
|||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1733 TCAGCCTCCAAAGCTTAAACTTGACCGGCCAAGGAACCTTAAAGAAAGTAGAGCTTTTAA 1792
Query 1860 AGGAACTAGAATTGAGAGATGGGCTTTGATGAGTATTGGAGGCAGCTCTGATCAGAAATC 1919
|||||| | || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1793 AGGAACCCGGATCGAGAGATGGGCTTTGATGAGTATTGGAGGCAGCTCGGATCAGAAATC 1852
Query 1920 TACCATTCCCAAGTTCATAAACGAGCTTACTCAAAAGTGTGAGCATTTGGGAGTCTTCTT 1979
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1853 TACCATTCCCAAGTTCATAAACGAGCTCACTCAAAAGTGTGAGCATCTGGGAGTCTTCTT 1912
Query 1980 AAGCAAGAACACATTAAGCAGTACCTTCTTTGAACCATCACACATACTCAACAACATTTC 2039
||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 1913 AAGCAAGAACACATTAAGCAGCACTTTCTTTGAACCATCACACATACTCAACAACATCTC 1972
Query 2040 GCTTCTCGAATCAAAACTGAAGGAGATTCAAAGAGCGGCATCGAACAATCTCCAGCTGAT 2099
||||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 1973 CCTTCTCGAATCGAAACTGAAGGAGATTCAAAGAGCGGCGTCCAACAATCTTCAGCTGAT 2032
Query 2100 TATTTGTGTAATGGAGAAAAAACATAAAGGGTACGGAGATCTAAAGAGGATATCAGAGAC 2159
||| |||||||||||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 2033 TATCTGTGTAATGGAGAAAAAACATAAAGGGTACGGAGATCTAAAGCGAATAGCAGAGAC 2092
Query 2160 AAGAATTGGTGTTGTGACACAATGCTGCTTATACCCTAACATCACTAAGCTCAGTTCTCA 2219
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2093 AAGAATTGGCGTTGTGACGCAATGCTGCTTATACCCTAACATCACTAAGCTCAGTTCTCA 2152
Query 2220 GTTCGTTTCGAACTTAGCTCTCAAGATAAACGCCAAGATCGGTGGATCCATGACCGAGCT 2279
||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 2153 GTTCGTTTCAAACTTAGCTCTCAAGATAAACGCCAAGATCGGCGGATCTATGACCGAGCT 2212
Query 2280 CTACAACTCGATACCTTCTCACATCCCTAGACTGCTTAGACCCGATGAGCCGGTTATCTT 2339
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 2213 CTACAACTCGATACCTTCTCACATCCCAAGACTACTTAGACCCGATGAGCCGGTTATCTT 2272
Query 2340 CATGGGAGCTGATGTAACGCATCCTCATCCATTCGATGATTGTAGCCCTTCAGTAGCGGC 2399
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2273 CATGGGAGCTGATGTAACGCATCCTCATCCATTCGATGACTGTAGCCCTTCAGTAGCGGC 2332
Query 2400 TGTGGTAGGGAGCATAAACTGGCCAGAAGCTAACCGATACGTCTCAAGAATGAGGTCTCA 2459
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 2333 TGTGGTCGGGAGCATAAACTGGCCAGAAGCTAACAGATACGTCTCAAGAATGAGATCTCA 2392
Query 2460 GACTCATAGGCAAGAGATCATACAAGATCTTGACTTGATGGTCAAGGAACTTCTTGATGA 2519
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 2393 GACTCATAGGCAAGAGATCATTCAAGATCTTGACTTGATGGTCAAGGAACTTCTTGACGA 2452
Query 2520 TTTTTACAAAGCGGTAAAAAAGCTTCCGAATCGAATCATATTCTTCAGGGACGGTGTTAG 2579
||| |||||||| || || ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 2453 TTTCTACAAAGCAGTCAACAAGCTTCCGAATCGAATCATATTCTTCAGAGACGGTGTGAG 2512
Query 2580 CGAGACACAGTTCAAGAAAGTTCTCCAAGAAGAGCTTCAATCGATAAAAA-CTGCTTGTT 2638
||||||||||||||||||||| |||||||||||||||||||| || |||| | ||||| |
Sbjct 2513 CGAGACACAGTTCAAGAAAGTCCTCCAAGAAGAGCTTCAATCCATCAAAATC-GCTTGCT 2571
Query 2639 CGAAGTTCCAAGATTACAATCCAAGCATCACATTCGCCGTGGTTCAGAAAAGACACCACA 2698
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2572 CTAAGTTCCAGGATTACAATCCAAGCATCACATTCGCCGTGGTCCAGAAAAGACACCACA 2631
Query 2699 CAAGGCTGTTCCGGTGCGATCCAGACCATGAGAACATACCTCCTGGTACAGTGGTTGATA 2758
||||||||||||||||| |||||||| |||||||||| |||||||| |||||||||||||
Sbjct 2632 CAAGGCTGTTCCGGTGCAATCCAGACAATGAGAACATCCCTCCTGGCACAGTGGTTGATA 2691
Query 2759 CAGTGATAACTCATCCGAAAGAGTTTGATTTTTATCTCTGTAGCCATTTAGGAGTGAAGG 2818
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 2692 CAGTGATAACTCATCCGAAAGAGTTTGATTTCTATCTCTGTAGCCACTTAGGAGTGAAAG 2751
Query 2819 GCACGAGCAGGCCAACGCATTACCATATTCTATGGGACGAGAACGAGTTCACTTCAGACG 2878
||||||||||||||||||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct 2752 GCACGAGCAGGCCAACGCATTACCACATCCTATGGGACGAAAACGAGTTTACTTCAGACG 2811
Query 2879 AATTGCAGAGACTTGTGTATAATTTGTGTTACACTTTCGTGAGGTGCACGAAACCTATAT 2938
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 2812 AATTGCAGAGACTTGTGTATAACTTGTGTTACACTTTCGTGAGGTGCACGAAACCTATTT 2871
Query 2939 CGATTGTGCCACCGGCTTATTATGCTCACCTTGCTGCGTACAGAGGAAGGCTATACATCG 2998
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2872 CGATTGTACCACCGGCTTATTATGCTCACCTTGCTGCGTACAGAGGAAGGCTCTACATCG 2931
Query 2999 AGAGATCATCTGAATCTAATGGAGGATCCATGAATCCTTCTTCTGTGTCTCGTGTTGGTC 3058
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2932 AGAGATCATCTGAATCTAATGGAGGATCCATGAATCCTTCTTCTGTGTCTCGAGTTGGTC 2991
Query 3059 CTCCAAAGACGATTCCTCTTCCTAAATTAAGTGATAATGTCAAGAATCTCATGTTTTACT 3118
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2992 CTCCAAAGACGATTCCTCTCCCTAAATTAAGTGATAATGTCAAGAATCTCATGTTTTACT 3051
Query 3119 GCTGATTCTTTAATA 3133
|||||||||||||||
Sbjct 3052 GCTGATTCTTTAATA 3066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119412918075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5