BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69450.1
Length=2278
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339179 jgi|Araly1|339179|fgenesh1_pg.C_scaffold_2001278 3365 0.0
> Ahg339179 jgi|Araly1|339179|fgenesh1_pg.C_scaffold_2001278
Length=2136
Score = 3365 bits (1822), Expect = 0.0
Identities = 2026/2126 (95%), Gaps = 8/2126 (0%)
Strand=Plus/Plus
Query 143 ATGCTTTTGTCTGCACTTCTTATGTCTGTTGGGATAAACTCTTGCCTATGTGTATTACTC 202
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGCTTTTGTCTGCACTTCTTATGTCTGTTGGGATAAACTCTTGCCTATGTGTATTGTTC 60
Query 203 TTCATTCTTTACTCTGTACTGAGGAAGCAGCCACGAAACTACGAGGtttttttACCTCG- 261
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 TTCATACTTTACTCTGTACTGAGGAAGCAGCCACGCAACTACGAGGTTTTTTTACCTCGT 120
Query 262 CAGACTCGCGA-ATGGGACGTATAAACGTAGACGCAACAAAGTAGCAAGGTATATACCTT 320
| ||||||| | ||||||||| |||||||||||| |||||||| ||||||||||||||||
Sbjct 121 C-GACTCGC-AGATGGGACGTCTAAACGTAGACGTAACAAAGTGGCAAGGTATATACCTT 178
Query 321 CTCTTAAATGGATTTGGAAATCATGGAGACCAACAGAAAAGGAACTTATGGAATCATCTG 380
|| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 179 CTGTTAAATGGATTTGGAAATCATGGAGGCCAACAGAAAAGGAACTGATGGAATCATCTG 238
Query 381 GCTTGGATGGTGTTGTGTTTATGAGAATGATCACTTTTAGTTTGAAAGTGTTCTTGTTTG 440
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 239 GCTTGGATGGTGTTGTGTTTATGAGAATGATTACTTTCAGTTTGAAAGTGTTCTTGTTTG 298
Query 441 CTGGTATCATTGGTGTTTTTGTTCTCTTGCCTGTGAACTGCTTTGGAGATCAACTTACAG 500
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CTGGGATCATTGGTGTTTTTGTTCTCTTGCCTGTGAACTGCTTTGGAGATCAACTTACAG 358
Query 501 TGATTGATTACGCTGACTGGTCAGCCAATTCTTTGGATCTGTTTTCTGTTGCAAACCTCA 560
||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 359 TGATTGACTACGCCGACTGGTCAGCGAATTCTTTGGATCTGTTTTCTGTTGCAAACCTCA 418
Query 561 AAGTCCGCTCACAATGGCTATGGGTTCACTTTGGAGCTATATATCTTGTGACTGTATTTG 620
|| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 419 AAATCCGCTCACAATGGCTATGGGTTCACTTTGGAGCTATATATCTTGTGACAGCATTTG 478
Query 621 TTTGCTGTCTTCTTTACTTTGAATTCAGATATATTGCGTTGAAAAGGATTGAGCATTTCT 680
| ||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||
Sbjct 479 TCTGCTGTCTTCTTTACTTTGAATTTAGATATGTTGCCTTGAAAAGGATTGAGCATTTCT 538
Query 681 ATTCATCTAAACCTAAGCCAGAACAGTTTACAATATTGGTTCGAAATATCCCCTCTTCAG 740
||||||| |||||| |||||||||||||||| ||||||||||| ||||| |||||| |||
Sbjct 539 ATTCATCCAAACCTCAGCCAGAACAGTTTACCATATTGGTTCGCAATATTCCCTCTACAG 598
Query 741 ATGGAAGCAGTGTGAGCGACACTGTTGATAGGTTCTTTGGTGAAAATCATTCCTCTACCT 800
|||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||| |
Sbjct 599 ATGGAAGCAGTGTGAGCGACACTGTTGATAGGTTCTTTGGAGAAAACCATTTTTCTACTT 658
Query 801 ATTTTTCTCATGTGGTTATCCATCGAACAAGTAAACTCCGAAGTGTCGTTGATAAGGCTA 860
| | |||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 659 ACCTGTCTCATGTGGTTATCCATCGAACAAGTAAACTACGGAGTGTCGTTGATAAGGCTA 718
Query 861 AAAAGTTATATAAAGAAGTGAAACATAAGAAGCCAGTTAAAAAGACGCCAATGAGATTCT 920
|||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 719 AAAAGTTATATAAACAAGTGAAACATAAGAAGCCAGTTAAGAAGAAGCCAATGAGATTCT 778
Query 921 TCAGTCGTAAAGACAATACTGAGGGTCACTATGAGAGTGTGTTACAGGAAATGGAACAGA 980
||||||| | ||||| | ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 779 TCAGTCGCAGAGACACTCCTGAGGGTCACTATGAGAGCGTGTTACAGGAAATGGAACAGA 838
Query 981 ACATACGATTGGGGCAAGCTGAAGTTTCAGCACCTGGAAAGGAAGTTCGAGCTGCTTTTG 1040
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 839 ACATACGATTGGGGCAAGCTGAAGTTTCTGCACCTGGAAAAGAAGTTCGAGCTGCTTTTG 898
Query 1041 TATCATTCAAGTCTCGATATGGTGCTGCAACAGCACTCCACATGCCACAATCAATCAACC 1100
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 899 TATCATTCAAGTCTCGATATGGTGCTGCAACGGCACTCCACATGCCGCAATCAATCAACC 958
Query 1101 CTACTTACTGGCTCACAGAACCAGCACCAGAACCTCATGACGTACACTGGCCTTTCTTCT 1160
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 959 CCACTTACTGGCTCACAGAACCAGCACCAGAACCTCATGACGTTCACTGGCCTTTCTTCT 1018
Query 1161 CTGCATCATTTATGCAGAAATGGCTTGCTAAAATTCTGGTTGTGTTCGCTTGTCTCCTCC 1220
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1019 CTGCATCATTTATGCAGAAATGGCTCGCTAAAATTCTGGTTGTATTCGCTTGTCTCCTCC 1078
Query 1221 TTACTATCTTATTTCTTGTTCCAGTAGTACTTGTCCAAGGTCTCACCAACCTT-CCTGCA 1279
|||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1079 TTACTATCTTGTTTCTTGTTCCAGTAGTACTTGTCCAAGGTCTCACCAA-CTTGCCTGCA 1137
Query 1280 CTAGAATTTATGTTCCCGTTCTTGTCATTGATCCTATCAATGAAAGTTGTAAGTCAAATA 1339
|||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||
Sbjct 1138 CTAGAATTTATGTTCCCGTTCTTGACATTAATTCTATCAATGAAAGTTGTAAGTCAAATA 1197
Query 1340 ATAACTGGATACCTTCCAAGTCTTATACTTCAGACATCTCTCAAAGTCGTACCTCCAACC 1399
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | |
Sbjct 1198 ATAACTGGATACCTTCCAAGTCTTATACTTCAGACGTCTCTGAAAGTCGTACCTCCCATC 1257
Query 1400 ATGGAGTTTCTCTCTTCTATCCAAGGGCACATTTGCCACAGCGATATACAAAAGAGTGCT 1459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 ATGGAGTTTCTCTCTTCTATCCAAGGGCACATTTGCCACAGCGATATACAAAAGAGTGCT 1317
Query 1460 TGTAACAAGGTGATCTGGTTCACTATATGGAATGTGTTTTTCGCAACTGTTTTCTCTGGA 1519
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1318 TGTAACAAGGTGATCTGGTTCACAATATGGAATGTGTTTTTTGCAACTGTTTTCTCTGGT 1377
Query 1520 TCAGCCTTCTACAAGCTTTCTGTAATTCTCGATCCAAAGCAAATCCCGCTCAAGTTGGCT 1579
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1378 TCAGCCTTCTACAAGCTTTCTGTAATTCTCGATCCAAAGCAAATTCCGGTCAAGTTGGCT 1437
Query 1580 GTGGCTGTTCCAGCTCAGGCTTCGTTTTTCATCGCTTATGTTGTGACAACAGGATGGACA 1639
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1438 GTGGCTGTTCCGGCTCAGGCTTCGTTTTTCATCGCTTATGTTGTGACAACAGGGTGGACA 1497
Query 1640 GATACTCTGACTGAACTCTTCCGTGTAGTTCCCTTCATGGTCAGTTACATAAAAAGATCT 1699
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1498 GATACTCTGACTGAACTCTTCCGTGTAGTTCCCTTCATGGTTAGTTACATAAAAAGATCA 1557
Query 1700 TTTGAACCGTCAGATGAAAATGAATTTGTTGTACCGCCAATGCGGTACCACAGAGACACT 1759
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1558 TTTGAACCGTCAGATGACAATGAATTTGTTGTCCCGCCAATGCGGTACCACAGAGACACC 1617
Query 1760 CCTAGAGTTCTCTTCTTTGGGCTTCTTGGGATTACATACTTCTTCTTAGCTCCATTGATT 1819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 CCTAGAGTTCTCTTCTTTGGGCTTCTTGGGATTACATACTTCTTCTTAGCTCCATTGATT 1677
Query 1820 CTTCCTTTCATCCTTTTATACTTTA-TCCTTGCATACATCATCTACCGAAACCAGTTTAT 1878
||||||||||||||| | |||||| || |||||||||||||||||||||||||||||||
Sbjct 1678 CTTCCTTTCATCCTTCTCTACTTTTGTC-TTGCATACATCATCTACCGAAACCAGTTTAT 1736
Query 1879 GAATGTGTATGCTCCAAAGTTTGATACGGGTGGAATGTTTTGGCCAATGATACACTATAC 1938
||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1737 GAACGTGTATGCTCCAAAGTTTGATACGGGCGGGATGTTTTGGCCAATGATACACTATAC 1796
Query 1939 GATGATATTCTCTCTTGTACTTATGCAAGCAATTGCAATCGGTCTATTTGCGCTAAAGAA 1998
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1797 GATGATATTCTCTCTTGTACTTATGCAAGCAATTGCGATCGGTCTATTTGCGCTAAAGAA 1856
Query 1999 GATGGAACTAGCTACATACTTGCTTGTCCCTCTTCCCGTTTTTACTCTTCTCTTTAACGA 2058
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1857 GATGGAACTAGCTACATACTTGCTTGTTCCTCTTCCCGTTTGTACTCTTCTCTTTAACGA 1916
Query 2059 GTTCTGTCGTAAACGCTTCATGCCTATATTCACTGATTATCCTGCTGAGGTGTTGACAAA 2118
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1917 GTTCTGTCGTAAACGCTTCATGCCTATATTCACTGCTTATCCTGCTGAGGTGTTGACAAA 1976
Query 2119 GAGAGATAAGGAAGATAGAAACGATCCAACAATGCCCGAGTTTTACAATAACTTGGTCAG 2178
|||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||
Sbjct 1977 GAGAGATAAGGAAGATCGAAACGATCCAAGAATGCCTGAGTTTTACAATAACTTGGTCAG 2036
Query 2179 TGCGTACAAAGATCCTGCTCTGCTCCCACTTAGATTCTCAGGATCAGGAAGCAGAAACGA 2238
||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 2037 TGCATACCAAGATCCTGCTCTGCTCCCACTTCGATTCTCAGGATCAGGAAGCAGAAATGA 2096
Query 2239 TAGCCTCACTAGTCCTCTTCTCTCTT 2264
||||||||||||||||||||||||||
Sbjct 2097 TAGCCTCACTAGTCCTCTTCTCTCTT 2122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85779231740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5