BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69460.1
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926241 jgi|Araly1|926241|scaffold_201802.1 1098 0.0
Ahg912378 jgi|Araly1|912378|Al_scaffold_0001_2632 529 2e-149
> Ahg926241 jgi|Araly1|926241|scaffold_201802.1
Length=685
Score = 1098 bits (594), Expect = 0.0
Identities = 646/671 (96%), Gaps = 3/671 (0%)
Strand=Plus/Plus
Query 65 TTCTCTGGATTTTTCAAAAATGTTTCTCCAATCGCAAAAACTATGGACGATGCTTCTAAT 124
||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 3 TTCTCTGGATTTTTC-AAAATGTTTCTCCAATCGCCAAAACTATGGAAGATGCTTCTAAT 61
Query 125 TCTAGCGATTTGGTCACCAATTTCACACTCGCTTCACTTCGATCTACACTCAGGTCGCAC 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 TCTAGCGATTTGGTCACCAATTTCACACTCGCTTCACTTCGATCTACACTCAGGTCGCAC 121
Query 185 AAAGTGTATCGCCGAAGACATCAAAAGCAATTCAATGACTGTTGGTAAATACAACATCGA 244
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AAAATGTATCGCCGAAGACATCAAAAGCAATTCAATGACTGTTGGTAAATACAACATCGA 181
Query 245 TAATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAGGTGACGTC 304
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 182 TAATCCTCACGAAGGTCAAGCTTTACCACAATCTCACAAAATCTCCGTCAAGGTGACGTC 241
Query 305 TAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCAGGACAATTCGCATTCTC 364
||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 242 TAATTCCGGGAACAATTACCATCACGCGGAACAAGTTGATTCGGGACAATTCGCGTTCTC 301
Query 365 GGCTGTTGAAGCAGGTGATTACATGGCTTGTTTCACTGCTGTTGATCATAAGCCTGAGGT 424
||| | |||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 302 TGCTATAGAAGCAGGAGATTACATGGCTTGCTTCACTGCTGTTGATCATAAGCCTGAGGT 361
Query 425 TTCGTTGAGTATTGACTTTGAGTGGAAGACTGGTGTTCAATCTAAAAGCTGGGCTAATGT 484
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TTCGTTGAGTATTGATTTTGAGTGGAAGACTGGTGTTCAATCTAAAAGCTGGGCTAATGT 421
Query 485 TGCTAAGAAGAGTCAAGTCGAAGTTATGGAATTTGAAGTAAAGAGTCTTCTTGATACTGT 544
|||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 422 TGCTAAGAAGAGCCAAGTCGAAGTTATGGAATTTGAGGTTAAGAGTCTTCTTGATACCGT 481
Query 545 TAACTCGATTCATGAAGAGATGTATTATCTTAGAGATAGGGAAGAAGAGATGCAAGA-CT 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 482 TAACTCGATTCATGAAGAGATGTATTATCTTAGAGATAGGGAAGAAGAGATGCAAGATCT 541
Query 604 TGAACCGGTCCACTAACACAAAAATGGCGTGGTTGAGTGTTCTCTCGTTTTTCGTCTGCA 663
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 542 -GAACCGGTCCACTAACACGAAAATGGCGTGGTTGAGTGTGCTCTCGTTTTTCGTCTGCA 600
Query 664 TAGGAGTTGCAGGGATGCAGTTTTTGCACTTGAAGACGTTTTTCGAGAAGAAGAAGGTTA 723
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TAGGAGTGGCAGGGATGCAGTTTTTGCACTTGAAGACGTTTTTCGAGAAGAAGAAGGTTA 660
Query 724 TCTGAAACTCT 734
|||||||||||
Sbjct 661 TCTGAAACTCT 671
> Ahg912378 jgi|Araly1|912378|Al_scaffold_0001_2632
Length=645
Score = 529 bits (286), Expect = 2e-149
Identities = 536/655 (82%), Gaps = 24/655 (4%)
Strand=Plus/Plus
Query 84 ATGTTTCTCCAATCGCAAAAACTATGGACGATGCTTCTAATT-CTAGCGATTTG-GTCAC 141
||| |||||||||| | ||| || || ||||| || || || ||||||| ||| |||
Sbjct 1 ATGGTTCTCCAATCACTAAATCTCTGCACGATACTACT-CTTCCTAGCGA-TTGCATCA- 57
Query 142 CAA-TTTCACACTCGCTTCACTTCG-ATCTACACTCAGGTCGCACAAAGTGTATCGCCGA 199
||| |||| || || || ||||||| || | || || ||||| ||||| |||||| ||||
Sbjct 58 CAAGTTTCTCAATCTCTCCACTTCGAAT-TGCAATCTGGTCGAACAAAATGTATCTCCGA 116
Query 200 AGACATCAAAAGCAATTCAATGACTGTTGGTAAATACAACATCGATAATCCTCACGAAGG 259
|||||||||||||||||||||||| || || ||||||| | ||| ||| ||| ||||||
Sbjct 117 AGACATCAAAAGCAATTCAATGACCGTCGGGAAATACACCGTCGTTAACCCTAACGAAGC 176
Query 260 TCAAGCTT-TACCACAAACTCACAAAATTTCCGTCA-AGGTGACGTCTAATTCCGGTAAC 317
||| ||| | || | | ||||||| || || ||| || |||| || | || |||||||
Sbjct 177 TCATCCTTCT-CCTCCATCTCACAAGATCTCTATCAGAG-TGACATCGAGTTACGGTAAC 234
Query 318 AATTACCATCACGCGGAACAAGTAGATTCAGGACAATTCGCATTCTCGGCTGTTGAAGCA 377
| || |||||||||||| || || || ||||||||||| ||| |||| || || ||
Sbjct 235 ACGTATCATCACGCGGAAGGTGTTGAATCGGGACAATTCGCGTTCACGGCGGTGGAGGCT 294
Query 378 GGTGATTACATGGCTTGTTTCACTGCTGTTGATCATAAGCCTGAGGTTTCGTTGAGTATT 437
|| ||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct 295 GGAGATTATATGGCTTGTTTCACTGCTGTTGATCATAAACCTGAGGTTACATTGAGTATT 354
Query 438 GACTTTGAGTGGAAGA-CTGGTGTTCAATCTAAAAGCTGG-GCTAATGTTGCTAAGAAGA 495
|| ||||| |||| || |||||||||||||||| || ||| | || ||| ||||||||||
Sbjct 355 GATTTTGATTGGA-GAACTGGTGTTCAATCTAAGAGTTGGAG-TAGTGTAGCTAAGAAGA 412
Query 496 GTCAAGTCGAAGTTATGGAATTTGAAGTAAAGAGTCTTCTTGATACTGTTAACTCGATTC 555
| ||||||||||||||||| ||||| ||||| || || |||| || || ||||| ||||
Sbjct 413 GCCAAGTCGAAGTTATGGAGTTTGATGTAAAAAGACTGATTGAAACCGTCAACTCTATTC 472
Query 556 ATGAAGAGATGTATTATCTTAGAGATAGGGAAGAAGAGATGCAAGA-CTTGAACCGGTCC 614
|||||||||||| |||||| ||||| |||||||||||||||||| | || ||||||| |
Sbjct 473 ATGAAGAGATGTTTTATCTCAGAGAAAGGGAAGAAGAGATGCAAAATCT-GAACCGGGCT 531
Query 615 ACTAACACAAAAATGGCGTGGTTGAGTGTTC-TCTCGT-TTTTCGTCTGCATAGGAGTTG 672
|| ||| | ||||||||||||||| || ||| |||| | ||||||| ||| ||||||| |
Sbjct 532 ACAAACTCGAAAATGGCGTGGTTGGGT-TTCCTCTC-TCTTTTCGTATGCTTAGGAGTCG 589
Query 673 CAGGGA-TGCAGTTTTTGCACTTGAAGACGTTTTTCGAGAAGAAGAAGGTTATCT 726
| |||| ||||||||||||| |||||||||||||||||||||||||| || ||||
Sbjct 590 C-GGGAATGCAGTTTTTGCATTTGAAGACGTTTTTCGAGAAGAAGAAAGTCATCT 643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36140525316
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5