BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G69470.1

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926242 jgi|Araly1|926242|scaffold_201803.1                        540    3e-153


> Ahg926242 jgi|Araly1|926242|scaffold_201803.1
Length=460

 Score =  540 bits (292),  Expect = 3e-153
 Identities = 381/424 (90%), Gaps = 5/424 (1%)
 Strand=Plus/Plus

Query  1    ATGTCAAAAAAGATTAACGAGCTTCTTCGTTACTGTGAAGAGAACTATATTGAGAGAGGA  60
            |||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct  21   ATGTCAAAAAAGATTAACGAGCTTCTTCGTTACTGTGAAGAGAACT-T-T-GAGAGAGGA  77

Query  61   AGTCTCGAACTTGCATTACGATGTGCTGTTTCAATCTGCAAAGCGAATCCTGACGCTCCT  120
            | ||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||
Sbjct  78   AATCTCGAACTTGCATTACGATGTGCTATTTCAATCTCCATAGCGAATCCTGACGCTCCT  137

Query  121  CAAGCTTATGCACACGTCGCCGCTTACAGAATCCTTTTGACGGCAGCCAATTATCGTACG  180
             || |||||||||||||||| ||||| |||||||||||||||| ||| ||  |||| | |
Sbjct  138  GAACCTTATGCACACGTCGCTGCTTATAGAATCCTTTTGACGGTAGCTAACAATCGCATG  197

Query  181  GTCACAGGAGAGCCTGACTGGTACGCTGTGTTGGGAATCAACAAACGCGGATCCTCAAAG  240
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  198  GTCACAGGAGAGCCCGACTGGTACGCTGTGTTGGGAATCAACAAACGCGGATCCTCGAAG  257

Query  241  TCTGTGGTGAACG-CTATTGATAGGCGGTGCGAGGAGATCATAGAGGTGTTGGATGGCGA  299
            || ||||  ||   | ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct  258  TCGGTGGC-AATTTCCATTGAGAGGCGGTGCGAGGAGATCATAGAAGTGTTGGATGGCGA  316

Query  300  AACTGGGGTCTCCAAAGCTGTTTCGAGGGTTTATGATCTGGTCAGACTTGGCGTATCGGA  359
              ||||| | ||||| ||||||| |||||||||||||||||||||| | || ||  | ||
Sbjct  317  GGCTGGGCTTTCCAAGGCTGTTTTGAGGGTTTATGATCTGGTCAGAATCGGTGTGGCAGA  376

Query  360  GTTGATGGACGAAGATAGGAGAAGAGCGTATGATCTCCGTTCTGGATTTTCTATTATCAA  419
            ||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||
Sbjct  377  GTTGATGGACGAAGATAGGAGAAGAGCATATGATCTCCGTTGTGGATTTTCTAATATCAA  436

Query  420  CTGA  423
            ||||
Sbjct  437  CTGA  440



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15224080011


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5