BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69485.1
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908526 jgi|Araly1|908526|Al_scaffold_0002_1607 549 1e-155
Ahg472732 jgi|Araly1|472732|fgenesh2_kg.1__2686__AT1G26740.1 324 6e-88
> Ahg908526 jgi|Araly1|908526|Al_scaffold_0002_1607
Length=426
Score = 549 bits (297), Expect = 1e-155
Identities = 387/430 (90%), Gaps = 8/430 (2%)
Strand=Plus/Plus
Query 1 ATGGCGTTGAGACTGACGACGCTAAAACGCGCCGCT-GCTGATTTCCGGCGTATATTAGA 59
|||||||||| ||||||||||||||||||||||| | | ||| | |||||| || |||||
Sbjct 1 ATGGCGTTGAAACTGACGACGCTAAAACGCGCCG-TGGTTGAATCCCGGCGCATTTTAGA 59
Query 60 ATCCCGATGCTTCAGTTACGTCGCTGCGATTTCTCCTCCCTTAG-ACAGCGCCATCGATC 118
|| |||| |||||| |||| | ||||| ||||||||||| | || ||||||| ||||
Sbjct 60 ATTCCGAAGCTTCAACCACGTTTCCGCGATCTCTCCTCCCTT-GAACGGCGCCATAGATC 118
Query 119 GCTCTACCGCTTCGCCGCCGCTTGTTTTACCGGAGTTTTATAATTAACAATCGGATTCTA 178
||||||||||||||||||||| || ||||||||||||||| | | | ||||||||||
Sbjct 119 TCTCTACCGCTTCGCCGCCGCTGGTCTTACCGGAGTTTTATCAGGATCTATCGGATTCT- 177
Query 179 T-CATTGATGAAAATAACTTCAGATTCGGTTTCCTGAGTTT-CTCTTTCGGTGGATCCAT 236
| ||||||||| || || ||||||||| |||||| || ||| || |||||||||||||||
Sbjct 178 TCCATTGATGACAAGAATTTCAGATTCTGTTTCCCGA-TTTCCTTTTTCGGTGGATCCAT 236
Query 237 GGAGCTAATGGCTGTGCCCAAGAAGAAGATTTCTAAACACAAGAGAGGGATAAGAAATGG 296
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GGAGCTAATGGCTGTTCCCAAGAAGAAGATTTCTAAACACAAGAGAGGGATAAGAAATGG 296
Query 297 ACCAAAGGCCTTTAAACCTACTCCTGTGATCATCCGTTGCAGGAGTTGTGGGCGAGTTAA 356
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACCAAAGGCCCTTAAACCTACTCCTGTGATCATCCGTTGCAGGAGTTGTGGGCGAGTTAA 356
Query 357 GCTGCCACATTTCTACTGCTGCAGTGGTGAGCGGGCAATACCTGATGAACAAAGCAATTC 416
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 357 GCTGCCACATTTCTACTGCTGCAGCGGTGAGCGGGTAATACCTGATGAACAAAGCAATTC 416
Query 417 AAACAACTGA 426
||||||||||
Sbjct 417 AAACAACTGA 426
> Ahg472732 jgi|Araly1|472732|fgenesh2_kg.1__2686__AT1G26740.1
Length=732
Score = 324 bits (175), Expect = 6e-88
Identities = 369/458 (81%), Gaps = 31/458 (7%)
Strand=Plus/Plus
Query 1 ATGGCGTTGAGACTGACGA-CGCTAAAACGCGCCGCTGCTGATTTCC-GGCGTATATTAG 58
|||||||||||| |||| | |||||||||||||||| | ||| ||| | || || || |
Sbjct 46 ATGGCGTTGAGATTGAC-ATCGCTAAAACGCGCCGCGGTTGA-GTCCTGCCGCATTTTGG 103
Query 59 AATCCCGATGCTTCAGTTACGTCGCTGCGATTTC-TCCTCCCTTAG-ACAGCGCCA-TCG 115
|| ||||| ||||||| | |||||||||||| | | | ||||| | || | | || |||
Sbjct 104 AAACCCGAAGCTTCAGCCATGTCGCTGCGATTCCGT-CGCCCTT-GAACGGAG-CATTCG 160
Query 116 ATCG-CTCTACCGCT-TCGCCGCCGCTTGTTTTACCGGAGTTTTATAATTAA-CAATCGG 172
|||| | | | || | ||||||||| |||||||| ||||| || | || ||| |||
Sbjct 161 ATCGAC-CGATTTCTAT-GCCGCCGCTGGTTTTACCTGAGTTCGATCA-GAATCAACCGG 217
Query 173 ATTCTATCATTGATGAAAATAACTTCAGATTC-GGTTTCCTGAGTTTCT-CTTTCGGTGG 230
| | | || |||||||| | |||| | ||| || ||||| ||||| | |||| |||
Sbjct 218 -GT-T-TGATCGATGAAAAGAGCTTCGGGTTCGGGCTTCCT-AGTTT-TGCTTTTAATGG 272
Query 231 ATCCATGGAGCTAATGGCTGTGCCCAAGAAGAAGATTTCTAAACACAAGAGAGGGATAAG 290
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 273 ATCCATGGAGCTAATGGCTGTGCCTAAGAAGAAGATTTCTAAACACAAGAGAGGGATAAG 332
Query 291 AAATGGACCAAAGGC-CTTTAAACCTACTCCTGTGATCATCCGTTGCAGGAGTTGTGGGC 349
|||||| |||||||| ||| || ||| ||||||||||||||||||||||||||| ||||
Sbjct 333 AAATGGCCCAAAGGCTCTT-AAGCCTGTTCCTGTGATCATCCGTTGCAGGAGTTGCGGGC 391
Query 350 GAGTTAAGCTGCCACATTTCTACTGCTGCAGTGGTGAGCGGGC-AATACC-T-GATGAAC 406
||||||||||||||||||||| ||| ||||| ||||||||| | || ||| | | ||
Sbjct 392 GAGTTAAGCTGCCACATTTCTTCTGTTGCAGCGGTGAGCGG-CTAA-ACCCTAGC-GAGT 448
Query 407 AAAGCAATTCAAACAACTGAGCAAGACTTACTATATGA 444
|| ||||||| ||||||||| |||| || | ||||||
Sbjct 449 AAGGCAATTCGAACAACTGATCAAGGTTTCCAATATGA 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26876656485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5