BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69490.1
Length=1100
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476076 jgi|Araly1|476076|fgenesh2_kg.2__1206__AT1G69490.1 1474 0.0
> Ahg476076 jgi|Araly1|476076|fgenesh2_kg.2__1206__AT1G69490.1
Length=1084
Score = 1474 bits (798), Expect = 0.0
Identities = 1001/1092 (92%), Gaps = 41/1092 (4%)
Strand=Plus/Plus
Query 26 AAAACTAACACAGAAAGaaaaaaaaCAGTTCCTGTTCTATTAGAT-TGTT-TTCTAAATT 83
||||| | || |||||| |||||||||| |||||||| ||||||| | || |||||||||
Sbjct 17 AAAAC-ATCA-AGAAAG-AAAAAAACAGCTCCTGTTCCATTAGATAT-TTCTTCTAAATT 72
Query 84 GTCTGAAAATCATGGAAGTAACTTCCCA-ATCTACCCTCCCTCCAGGGTTCAGATTTCAT 142
||||||||||||||||||||| || ||| ||||| ||||||||||| ||||||||||||
Sbjct 73 GTCTGAAAATCATGGAAGTAAATT-CCAGTTCTACTCTCCCTCCAGGATTCAGATTTCAT 131
Query 143 CCTACCGACGAAGAACTCATCGTTTACTATCTTCGAAACCAGACCATGTCTAAACCATGC 202
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 132 CCTACCGACGAAGAACTCATCGTCTACTATCTTCGAAACCAGACCATGTCTAAACCATGC 191
Query 203 CCTGTCTCCATCATCCCAGAAGTTGATATCTACAAATTCGACCCATGGCAATTACCCGAG 262
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 192 CCTGTCTCCATCATCCCAGAAGTCGATATCTATAAATTCGACCCATGGCAATTACCTGAG 251
Query 263 AAAACAGAGTTTGGAGAAAATGAGTGGTATTTCTTCAGCCCTAGAGAAAGAAAATATCCA 322
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 252 AAAACAGAGTTTGGAGAAAATGAGTGGTATTTCTTCAGCCCTAGAGAAAGAAAGTATCCA 311
Query 323 AACGGAGTCAGACCAAACCGGGCAGCTGTTTCCGGTTATTGGAAAGCAACCGGTACAGAC 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 AACGGAGTCAGACCAAACCGGGCAGCTGTTTCCGGTTATTGGAAAGCAACCGGTACAGAC 371
Query 383 AAAGCCATTCACAGCGGTTCAAGTAACGTAGGTGTCAAGAAAGCTCTAGTCTTCTACAAA 442
|||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 372 AAAGCCATTCACAGCGGTTCGAGTAACGTGGGTGTCAAGAAAGCTCTCGTCTTCTACAAA 431
Query 443 GGTAGACCTCCTAAAGGAATCAAAACTGACTGGATCATGCATGAGTATCGTCTCCATGAT 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 GGTAGACCTCCTAAAGGAATCAAAACTGACTGGATCATGCATGAGTATCGTCTCCATGAT 491
Query 503 TCACGTAAAGCATCAACGAAACGTAACGGTTCCATGAGGTTAGATGAATGGGTACTGTGT 562
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 492 TCTCGTAAAGCATCAACGAAACGTAACGGTTCCATGAGGTTAGATGAATGGGTATTGTGT 551
Query 563 AGGATATACAAGAAGAGAGGAGCAAGTAAGCTTCTGAATGAGCAAGAGGGTTTCATGGAC 622
||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| |||
Sbjct 552 AGGATTTACAAGAAGAGAGGAGCAGGGAAGCTTCTGAATGAGCAAGAGGGTTTCATTGAC 611
Query 623 GAAGTACTAATGGAGGATGAGACAAAAGTTGTAGTTAACGAAGCAGAGAGAAGAACTGAA 682
||||||||||| || || | | ||| |||||| |||||||||||||||||||||| |||
Sbjct 612 GAAGTACTAATTGATGA-G-G-CAACAGTTGTTGTTAACGAAGCAGAGAGAAGAAATGAG 668
Query 683 GAAGAGATAATGATGA-T--GACGTCGATGAAACTTCCAAGGACGTGTTCGCTGGCTCAT 739
|||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct 669 GAAGAGATAATGATGAATATGACGTCGACGAAACTTCCAAGGACGTGTTCGCTGGCTCAT 728
Query 740 TTGTTGGAAATGGATTACATGGGACCCGTCTCTCACATT-----G-ATAATTTTAGTCAG 793
|||||||||||||||||||||||||| |||||||||||| | |||| |||| ||||
Sbjct 729 TTGTTGGAAATGGATTACATGGGACCAGTCTCTCACATTTTCACGGATAACTTTACTCAG 788
Query 794 TTCGATCATCTTCATCAACCTGATTCGGAGTCTAGTTGGTTCGGGGACCTTCAGTTTAAC 853
||||||||| ||||||||||||||||||||||| | ||||||||||| || |||||||||
Sbjct 789 TTCGATCATATTCATCAACCTGATTCGGAGTCTGGATGGTTCGGGGATCTACAGTTTAAC 848
Query 854 CAAGACGAGATCTTAAACCATCATCGTCAAGCGATGTTTAAGTTTTAGTGATGGGGTCAG 913
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||| | ||
Sbjct 849 CAAGACGAGATCTTAAACCATCATCGTCAAGCTATGTTTAAGTTCTAGTGATGGGTTTAG 908
Query 914 TaaaaaagaagaagaaacaagaaaagaTGTGCTTGAAAAGTTACTTTGGTAGATATTTGG 973
|||||| || | | | | || ||| | || ||| |||| ||||||||| |
Sbjct 909 TAAAAA-GATGT-G---CTTGGAA---TGT--T--AA---TTAATTTGTTAGATATTTTG 953
Query 974 TTAGTTTGGGTACATG-AATGAAAATTGTAAAATATTATAACTAAAACCCAATGGGATTT 1032
|||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TTAGTTTGGGGACATGCAA-GAAAATTGTAAAATATTATAACTAAAACCCAATGGGATTT 1012
Query 1033 TATATTTCTCCCATATGAAT----GTGAAATGAAAAACAATGTTTAATTAAAAATTAAGT 1088
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1013 TATATTACTCCCATATGAATTAATGTGAAATGAAAAACAATGTTTAATTAAAAATTAAGT 1072
Query 1089 TGTTTCAGCATG 1100
||||||||||||
Sbjct 1073 TGTTTCAGCATG 1084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40982135775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5