BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G69510.1

Length=780
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg908529 jgi|Araly1|908529|Al_scaffold_0002_1610                    604    2e-172


> Ahg908529 jgi|Araly1|908529|Al_scaffold_0002_1610
Length=426

 Score =  604 bits (327),  Expect = 2e-172
 Identities = 369/390 (95%), Gaps = 0/390 (0%)
 Strand=Plus/Plus

Query  131  ATGGAAGACGTGAAAGGGAAGGAGATTATTGATGATGCTCCTATTGACAACAAGGTTTCA  190
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAAGACGTGAAGGGGAAGGAGATTATTGATGATGCTCCTATTGACAACAAGGTTTCA  60

Query  191  GATGAAATGGAGAGTGAGGAAAATGCGATCAAGAAAAAGTATGGAGGATTGTTGCCTAAG  250
            |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct  61   GATGAAATAGAGAGTGAGGAAAATGCGATTAAGAAAAAGTATGGAGGATTGTTGCCAAAG  120

Query  251  AAGATTCCTTTGATATCTAAGGACCATGAACGTGCGTTTTTTGACTCAGCTGATTGGGCT  310
            |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct  121  AAGATTCCATTGATATCTAAGGACCATGAACGCGCGTTTTTTGACTCTGCTGATTGGGCT  180

Query  311  TTAGGCAAGCAAAAAGGACAGAAGCCGAAAGGGCCTTTGGAAGCTCTCCGCCCAAAACTG  370
            ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct  181  TTAGGCAAGCAAAAAGGACAGAAACCCAAAGGACCTTTGGAAGCTCTCCGCCCAAAACTG  240

Query  371  CAGCCAACCCCGCAACAGCAACCAAGAGCAAGACGAATGGCTTATTCTTCAGGCGAAACT  430
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  241  CAGCCAACCCCGCACCAGCAACCAAGAGCAAGACGAATGGCTTATTCTTCAGGCGATACT  300

Query  431  GAAGACACTGAGATTGATAACAACGAAGCTCCGGATGACCAAGCCTGCGCATCAGCTGTG  490
            |||||| |||||| ||||||||||||| |||| |||||||||||||||||||||||||| 
Sbjct  301  GAAGACTCTGAGACTGATAACAACGAATCTCCCGATGACCAAGCCTGCGCATCAGCTGTT  360

Query  491  GATAGTACCAATTTAAAGGACGATGGAGGC  520
            || | ||| ||||||||||| |||||||||
Sbjct  361  GACAATACAAATTTAAAGGAAGATGGAGGC  390



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28782802335


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5