BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69526.2
Length=1385
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315955 jgi|Araly1|315955|fgenesh1_pm.C_scaffold_2000988 922 0.0
> Ahg315955 jgi|Araly1|315955|fgenesh1_pm.C_scaffold_2000988
Length=2262
Score = 922 bits (499), Expect = 0.0
Identities = 573/609 (94%), Gaps = 4/609 (1%)
Strand=Plus/Plus
Query 254 CTCAAATACTCACCTCGCAGAGTGATTCGAGCTTCACGAGATCATCTTCGTGCTGAAACT 313
|||| |||||||||||||||||||||| |||||||||||||||| |||| |||| |||||
Sbjct 1366 CTCACATACTCACCTCGCAGAGTGATTAGAGCTTCACGAGATCAACTTCATGCTCAAACT 1425
Query 314 CTAAAGAGTCATCAACTTCCTTCAGGCTCCTCCTCCACCAGCTTATGTTCCTGTGGAAGA 373
||||||||||||| |||||||||||||| |||| ||||||||||||||| |||||||||
Sbjct 1426 GTAAAGAGTCATCACCTTCCTTCAGGCTCATCCTACACCAGCTTATGTTCATGTGGAAGA 1485
Query 374 AAACATTTTCTCGAAGCAGCTAGCCCGACGATGCCCTTTC-TTCCTATTTGTTCACCTAA 432
||||||||||| |||||||||||||||||||||||||||| |||| || | ||| |||||
Sbjct 1486 AAACATTTTCTTGAAGCAGCTAGCCCGACGATGCCCTTTCTTTCC-ATCTATTCTCCTAA 1544
Query 433 TGCTTCGCGTTCCAAGGATGTTTCAGAAACATTTCATCCTCAGAGGCCAGATTGGTATAA 492
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1545 TGCTTCGCGTTCCAAGGATGTTTCAGAAACATTTCATCCTCAGAAGCCAGATTGGTATAA 1604
Query 493 GGAGCTTTTTGCTTGGTTCTTGAGCACAGGAATGCGATCTTATGAAGCAGAGATCGCCGA 552
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1605 GGAGCTTTTTGCTTGGTTCTTAAGCACAGGAATGCGATCTTATGAAGCAGAGATCGCCGA 1664
Query 553 GTACAAGAGGAAACTATTCGAAAAACTGGCTGGTAAAGCAGAAACAGTGCTGGAGATTGG 612
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1665 TTACAAGAGAAAACTATTCGAAAAATTGGCTGGTAAAGCAGAAACAGTGCTGGAGATTGG 1724
Query 613 TGTTGGTACTGGCCCTAATCTGAAGTACTTTGCTGGTAATGAAAACGTCTGTGTTTTTGG 672
||||||||| || | |||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1725 TGTTGGTACAGGTCTTAATCTGAAGTACTTTGCCGGTAACGAAAACGTCTGTGTTTTTGG 1784
Query 673 TATGGACCCGAACCATAAAATGGAAAAGTACGCATGTGAAT-CTGCCAGAGAAGCTGGGA 731
|||||||||||| || |||||||||||||||||||||| || |||| |||||||||||||
Sbjct 1785 TATGGACCCGAATCACAAAATGGAAAAGTACGCATGTG-ATACTGCTAGAGAAGCTGGGA 1843
Query 732 TGAAACCTGAAAACTTTAGATTCATGCATGGAGTAGGAGAAGCTATACCATTAGATGATG 791
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1844 TGAAACCTGAAAACTTTAGATTCATTCAAGGAGTAGGAGAAGCTATACCATTAGATGATG 1903
Query 792 ACTCTATGGATTCAGTGGTTGCAACACTTGTTCTATGTTCTGTCTCTGATGTCACTCAAA 851
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1904 ACTCTGTGGATGCAGTGGTTGCAACACTTGTTCTATGTTCTGTCTCTGATGTCACTCAAA 1963
Query 852 CACTAAATG 860
|||| ||||
Sbjct 1964 CACTCAATG 1972
Score = 316 bits (171), Expect = 2e-85
Identities = 191/201 (95%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 923 GATGGATCtttttttAGGCATGTTCAAAATGTACTGGATCCAATACAGCAAGTAGTTGCA 982
|||||||||||||||||||||||||| ||| || |||||||| |||||||||||||||||
Sbjct 2062 GATGGATCTTTTTTTAGGCATGTTCAGAATATATTGGATCCATTACAGCAAGTAGTTGCA 2121
Query 983 GATGGATGTCATTTGACAAGAAACACCGACTTACACATTTCGGCTGCGGGTTTCGATGGT 1042
|||||||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 2122 GATGGATGCCATTTAACAAGAAACACCGACTTATACATTTCCGCTGCGGGTTTCGATGGT 2181
Query 1043 GGCACTGAGATCAACGATACGGCAATCTATAGCTTCCCTTGGATTATAAGACCTCATGTC 1102
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2182 GGCACTGAGATCAACAATACGGCAATCTATAGCTTCCCTTGGATTATAAGACCTCATGTC 2241
Query 1103 TATGGAGCAGCATACAAGTAA 1123
||||||||||| |||||||||
Sbjct 2242 TATGGAGCAGCCTACAAGTAA 2262
Score = 300 bits (162), Expect = 2e-80
Identities = 351/438 (80%), Gaps = 29/438 (7%)
Strand=Plus/Plus
Query 587 AAAGCAGAAACA-GTGCTGGAGATTGGTGTTGG-TACTGGCCCTAATCTGAAGTACT-T- 642
||||| |||| | || ||||||||||| |||| | | || |||||| ||| ||||| |
Sbjct 193 AAAGCTGAAA-AGGTTTTGGAGATTGGTATTGGCT-CAGGTCCTAATATGAGGTACTATG 250
Query 643 -TGCTGGTAATGA-AAACG-T-CTGTGTTTTTGGTATGGACCCGAA-CCATAAAATGGAA 697
|||| ||||| | || | | || | || | ||| |||| || || || ||||| |||
Sbjct 251 CTGCTCGTAAT-AGTAATGTTACTCT-TTATGGGT-TGGATCCAAATCC-CAAAAT-GAA 305
Query 698 -AAGTACGCATGTGAATCTGCCA-GAGAAGCTGGGA-TGAAACCTGAAAACTTTAGATTC 754
||||||||| | |||| || | || |||| ||| |||||||| ||||||||||||||
Sbjct 306 GAAGTACGCACGCAAATCCGCTACGA-AAGC-AGGATTGAAACCTAAAAACTTTAGATTC 363
Query 755 ATGCATGGAGTAGGAGAAGCTATACCATTAGATGATGACTCTATGGATTCAGTGGTTGCA 814
| ||| |||||||||||||||||||||||| | ||| ||||| ||||| |||| ||||||
Sbjct 364 AAGCAAGGAGTAGGAGAAGCTATACCATTAAAAGATAACTCTGTGGATGCAGTTGTTGCA 423
Query 815 ACACTTGTTCTATGTTCTGTCTCTGATGTCACTCAAACACT-AAATGAGATCAAGCGGGT 873
||||||||||||||||||||||||||||||||||||||||| ||| || ||||| |||||
Sbjct 424 ACACTTGTTCTATGTTCTGTCTCTGATGTCACTCAAACACTCAAA-GAAATCAAACGGGT 482
Query 874 GCTGAAACCGGGTGGGATTTTCTTATTCATCGAGCACGTAGCGGCTAAAGATGGATCttt 933
||||| ||| || ||| ||||| | ||| | || || || || || ||||||||||| ||
Sbjct 483 GCTGAGACCAGGAGGGGTTTTCATCTTCTTAGAACATGTTGCAGCAAAAGATGGATCGTT 542
Query 934 ttttAGGCATGTT-CA-AAATGTACTGGATCCAATACAGCAA-GTAGTTGCAGATGGATG 990
|| | || | || || |||| | |||||||| | |||||| | | |||||||||||||
Sbjct 543 CTTCAAGCGT-TTGCAGAAAT-TGCTGGATCCGTTGCAGCAAAG-ACTTGCAGATGGATG 599
Query 991 TCATTTGACAAGAAACAC 1008
|||||||||||||||||
Sbjct 600 CCATTTGACAAGAAACAC 617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51764642955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5