BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69530.3
Length=1322
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476086 jgi|Araly1|476086|fgenesh2_kg.2__1216__AT1G69530.4 1964 0.0
> Ahg476086 jgi|Araly1|476086|fgenesh2_kg.2__1216__AT1G69530.4
Length=1313
Score = 1964 bits (1063), Expect = 0.0
Identities = 1243/1327 (94%), Gaps = 23/1327 (2%)
Strand=Plus/Plus
Query 1 CCAATTCTAAACCAAACAACAGATTCTCATAATCATCTCTTCTTTT-TTCCTCTTTACGA 59
||||||||||||||||||||| ||||||| |||||||||||||||| || ||||||| ||
Sbjct 1 CCAATTCTAAACCAAACAACATATTCTCACAATCATCTCTTCTTTTATT-CTCTTTAAGA 59
Query 60 AAAGAAGAAAGATCAAACCTTCCAAGTAATCATTTTCTTTCTCTCTCTcacacacacaca 119
|| ||||| |||||||| ||||||||||||||||||| || ||||||| |||| | |||
Sbjct 60 AAGGAAGAGAGATCAAAGCTTCCAAGTAATCATTTTC-TT-TCTCTCT--CACATATACA 115
Query 120 TTCACTAGTTTTAGCTTCACAAAATGTGATCTAACTTCATTTACCTATATGCAGGTTTAC 179
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 116 TTCACTAGTTTTAGCTTCACAAAATGTGATCTAACTTCATTTACCTATGTGCAGGTTTAC 175
Query 180 ACaaaaagaaaaaaGAACGATGGCTCTTGTCACCTTCTTGTTTATTGCTACCCTTGGAGC 239
|||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 176 ACAAAACGAAAAAAGAACCATGGCTCTTGTCACCTTCTTGTTTATAGCTACCCTAGGAGC 235
Query 240 AATGACGTCACATGTCAATGGTTACGCCGGAGGAGGTTGGGTCAACGCACACGCCACATT 299
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 236 AATGACGTCACATGTCAACGGCTACGCCGGAGGAGGTTGGGTCAACGCACACGCCACATT 295
Query 300 CTACGGTGGTGGTGATGCTTCCGGCACAATGGGAGGTGCTTGTGGATACGGAAACCTATA 359
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 296 CTACGGTGGTGGTGATGCTTCCGGCACAATGGGAGGTGCTTGTGGTTACGGAAACCTATA 355
Query 360 TAGCCAAGGCTATGGAACCAACACGGCGGCGCTAAGCACGGCTCTATTCAATAATGGTCT 419
|||||||||||||||||||||||| || ||||||||||||||| | ||||| || ||| |
Sbjct 356 TAGCCAAGGCTATGGAACCAACACCGCAGCGCTAAGCACGGCTTTGTTCAACAACGGTTT 415
Query 420 AAGTTGTGGTGCTTGCTTCGAGATAAGATGTCAAAACGATGGAAAATGGTGTCTTCCTGG 479
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 416 AAGTTGTGGTGCTTGCTTCGAGATAAGATGCCAAAACGATGGAAAATGGTGTCTCCCTGG 475
Query 480 CTCAATTGTCGTCACAGCCACAAACTTTTGCCCTCCTAACAACGCCTTACCGAACAACGC 539
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 476 CTCAATTGTCGTCACAGCCACAAACTTTTGCCCGCCTAACAACGCGTTACCGAACAACGC 535
Query 540 AGGAGGTTGGTGTAACCCTCCTCAGCAGCATTTTGATCTCTCTCAGCCCGTATTTCAACG 599
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 536 AGGAGGTTGGTGTAACCCTCCTCAGCAACATTTTGATCTCTCTCAGCCCGTATTTCAACG 595
Query 600 CATCGCTCAATACAGAGCCGGCATTGTCCCCGTCGCTTACCGAAGAGTGCCGTGCGTGAG 659
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 596 TATCGCTCAATACAGAGCCGGCATTGTTCCCGTCGCTTACCGAAGAGTGCCATGCGTGAG 655
Query 660 AAGAGGAGGAATAAGGTTTACGATAAACGGACACTCTTACTTCAACCTAGTTCTGATCAC 719
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||
Sbjct 656 AAGAGGAGGAATAAGGTTTACGATAAACGGACACTCTTACTTCAACTTAGTTCTTATTAC 715
Query 720 TAACGTCGGAGGAGCCGGAGATGTTCACTCAGCGATGGTTAAAGGTTCAAGAACTGGATG 779
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||
Sbjct 716 TAACGTCGGAGGAGCCGGAGATGTTCACTCAGTGATGGTTAAGGGTTCAAGAACAGGATG 775
Query 780 GCAAGCGATGTCAAGAAACTGGGGACAGAACTGGCAGAGTAACTCTTACCTTAACGGACA 839
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 776 GCAAGCTATGTCAAGAAACTGGGGACAGAACTGGCAGAGTAACTCTTACCTAAACGGACA 835
Query 840 ATCTCTCTCATTCAAAGTTACAACAAGCGATGGCCAAACCATTGTCTCTAACAACGTTGC 899
|||||||||||||||||| || ||||||||||| | ||||| ||||||||||||||| ||
Sbjct 836 ATCTCTCTCATTCAAAGTCACCACAAGCGATGGTCGAACCACTGTCTCTAACAACGTGGC 895
Query 900 TAACGCAGGCTGGTCTTTCGGCCAGACCTTCACAGTAGAAGCAGTTAGAGAGAGGGGCAT 959
||||||||||||||||||||||||||||||||| | || | |||| | | || |||||||
Sbjct 896 TAACGCAGGCTGGTCTTTCGGCCAGACCTTCACCGGAGCA-CAGT-A-A-AG-GGGGCAT 950
Query 960 GATAGTAATTTGGTCCTTTCTTTCAATTGAGGTTAACCTAAAAAGAAGTGGTGCTTCGAG 1019
|||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 951 GATAGTAATTTGGTTCTTTCTTTCAATTGAGGTTTACCTAAAA-GAAGTGGTGCTTCGAG 1009
Query 1020 TGCTTGATTTTGCACGAGGCCTTGATGATGTCATCTTTTGGGAACCTTTTCTTATCTTTC 1079
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1010 TGCTTGATTTTGCACGAGGCCTTGATGGTGTCATCTTTTAGGAACCTTTTCTTATCTTTC 1069
Query 1080 TTCATTTTTATTGGTAAGGTTTTATGTTATACTGATGCAGAGGTGGTATTGAGTTGAAGT 1139
||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||
Sbjct 1070 TTCATTTTTATTGGTAAGGTTTTATGTTATACTGATGCAGAGGTGGTCTTAAGTTTAAGT 1129
Query 1140 ACCACCCGCTAGTAGTAGTAGTAGT---CTCTCGTGT-C--ATTTGTATCCCTTCTCGAA 1193
||||||||||||||||||||||||| ||||| ||| | |||||||||||||||||||
Sbjct 1130 ACCACCCGCTAGTAGTAGTAGTAGTAGTCTCTCATGTACTCATTTGTATCCCTTCTCGAA 1189
Query 1194 GCGAGAGGGAGAGTTTTAGATTTTATTAATCTCGTTAAAGTCATT-TGTATGTTGTAAAT 1252
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1190 GCGAGAGGGAGAGTTTTAGATTGTATTAATCTCGTTAAAGTCATCATGTATGTTGTAAAT 1249
Query 1253 TTTTCAATTTCTACAAGTAA-GAAATATTGGAGATTTGTTTGTTATATACTTTGTGTAAT 1311
|||||||||||||||||||| ||| | |||| |||||||| | ||||||||||||||||
Sbjct 1250 TTTTCAATTTCTACAAGTAATGAA-TGTTGGGGATTTGTTA-T-ATATACTTTGTGTAAT 1306
Query 1312 AAATTAT 1318
|||||||
Sbjct 1307 AAATTAT 1313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49445423349
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5