BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69540.1
Length=1540
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908534 jgi|Araly1|908534|Al_scaffold_0002_1615 1585 0.0
> Ahg908534 jgi|Araly1|908534|Al_scaffold_0002_1615
Length=1041
Score = 1585 bits (858), Expect = 0.0
Identities = 986/1046 (94%), Gaps = 16/1046 (2%)
Strand=Plus/Plus
Query 244 ATGGGTAGAGTGAAGCTAAAGATAAAGAAACTACAGAACATGAATGGACGTCAATGTACG 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGGTAGAGTGAAGCTAAAGATAAAGAAACTACAAAACATGAATGGACGTCAATGTACG 60
Query 304 TATACGAAAAGGAGACATGGGATTATGAAAAAGGCTAAGGAGTTATCGATCTTATGCGAC 363
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 TATGCGAAAAGGAGACATGGGATCATGAAAAAGGCTAAGGAGTTATCGATCTTATGCGAC 120
Query 364 ATAGATGTTGTGCTTCTCATGTTTTCTCCCATGGGAAAGGCTTCAATTTGCATAGGCAAA 423
|| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 121 ATCGATGTTGTGCTTCTCATGTTTTCTCCCATGGGGAAGGCTTCAGTTTGCATAGGCAAA 180
Query 424 CACAGCATTGGAGAAGTCATTGCTAAGTTTGCTCAACTCTCTCCTCAAGAAAGAGCAAAG 483
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 181 CACAGCATTGGAGAAGTCATTGCTAAGTTTGCTCAACTCAGTCCTCAAGAAAGGGCAAAG 240
Query 484 AGGAAGTTGGAAAACCTTGAAGCCTTGAGGAAAACT-TTCATGAAAGCTAACCACGATAT 542
||||| |||||||||||||||||||||||||||| | |||||||||| ||||||||||||
Sbjct 241 AGGAAATTGGAAAACCTTGAAGCCTTGAGGAAAA-TATTCATGAAAGTTAACCACGATAT 299
Query 543 AGATATATCAAAGTTTCTAGACAGAATTAGTACACCAACAGTTGAGGTGCTTAGCGAAAA 602
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 AGATATATCAAAGTTTCTAGACAGAAGCAGTACACCAACAGTTGAGGTGCTTAGCGAAAA 359
Query 603 AATCAGGTTTCTGCAAACACAATTATCAGATATACACACACGACTAAGCTACTGGACCGA 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AATCAGGTTTCTGCAAACACAATTATCAGATATACACACACGACTAAGCTACTGGACCGA 419
Query 663 TGTAGATAATATCGACAGCGTAGATGTTTTGCAGCAACTAGAACATTCACTAAGACAATC 722
|||||| ||||||||||| ||||||| |||||||||||||||||||||| ||||||||||
Sbjct 420 TGTAGAAAATATCGACAGTGTAGATGATTTGCAGCAACTAGAACATTCATTAAGACAATC 479
Query 723 TCTGGCTCAAATCTATGGTCGTAAGGCGAGCATGCCGCA-ACGTCAGCAGCAACAACTTA 781
||||||||||||||||||||||||||||||||||||| | || |||||| | ||||||||
Sbjct 480 TCTGGCTCAAATCTATGGTCGTAAGGCGAGCATGCCG-AGACATCAGCATCGACAACTTA 538
Query 782 TGTCCT-CACAATGCAAAAACCAGTTGCAGACTGAAATAGATATAGATTTCGGAATGGAG 840
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TGTCCTCCA-AATGCAAAAACCAGTTGCAGACTGAAATAGATATAGATTTCGGAATGGAG 597
Query 841 ATGGAGCAACAACTTGAGAATTTCTCATGGGTTCGTACCGATGAAAACATGAATGTTCCT 900
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 ATGGAGCAACAGCTTGAGAATTTCTCATGGGTTCGTACCGATGAAAACATGAATGTTCCT 657
Query 901 ATAGAAGAAGAAGACCCTAATCTGCAGCTTCATCACATGTACAAGGACATAACGTGTTCT 960
| ||||||||||||||||| ||||||||||||| ||||||| |||||||| |||||||
Sbjct 658 CCAAAAGAAGAAGACCCTAATATGCAGCTTCATCAGATGTACAGGGACATAAAGTGTTCT 717
Query 961 GCAAGTTCAGCTCTTGGAAATTACTCAGGA--C-TCTTTAGTAAAAGCTCAGATATCT-T 1016
||||||||| |||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct 718 GCAAGTTCATCTCTTGGAAATTACTCAGGACTCTTCTTTAGTAAAAGCTCAGATCTCTCA 777
Query 1017 A--CAAAAACTAGAAACCGGTAGCATTCCCGGGACATCGGCTGATCCGAACCAAC-AATT 1073
| | |||| || ||||||| || |||||||||||| | |||||||| ||||||| ||||
Sbjct 778 ACTCCAAAATTACAAACCGGCAGTATTCCCGGGACAGCAGCTGATCCAAACCAACAAATT 837
Query 1074 CAGCAATCTCAGTTTCTTAAATGATCAAAAGCTTAAGCAACTAGCTGAGTGGAATCTATT 1133
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 838 -AGCAATCTCAGTTTCCTAAATGATCAAAAGCTTCAGCAACTAGCTGAGTGGAATCTATT 896
Query 1134 AGGCAGTCCTGCGGATTACTACGTTAGCCAGATCTTGGAAGCTTCTTATAAGCCTCAGAT 1193
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 897 AGGAAGTCCCGCGGATTACTACGTTAGCCAGATCTTGGAAGCTTCTTATAAGCCTCAG-T 955
Query 1194 T-GGAGGAAAAAACAACGGCGCTTCTTCTGAAACATTACCTTATGTTGCGGTCTTCGATG 1252
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TCGGAGGAAAAAACAACTGCGCTTCTTCTGAAACATTACCTTATGTTGCGGTCTTCGATG 1015
Query 1253 ATCCTCTATATTTTTGGCCAAACTGA 1278
||||||||||||||||||||||||||
Sbjct 1016 ATCCTCTATATTTTTGGCCAAACTGA 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57668630930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5