BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69550.1
Length=5199
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908535 jgi|Araly1|908535|Al_scaffold_0002_1616 863 0.0
Ahg889979 jgi|Araly1|889979|Al_scaffold_0007_1965 507 4e-142
Ahg476559 jgi|Araly1|476559|fgenesh2_kg.2__1689__AT1G74220.1 357 5e-97
Ahg896915 jgi|Araly1|896915|Al_scaffold_0005_881 161 4e-38
> Ahg908535 jgi|Araly1|908535|Al_scaffold_0002_1616
Length=2394
Score = 863 bits (467), Expect = 0.0
Identities = 735/862 (85%), Gaps = 27/862 (3%)
Strand=Plus/Plus
Query 1483 TGATGGTTTCGAGAAGCTTGCTACGAAAGTTACAAGACTTGCTGGTAATCTCCCTTTGGG 1542
||||||||||||| | |||||| |||||| |||||||||||||||| |||||||||||
Sbjct 678 TGATGGTTTCGAGGATCTTGCTTGGAAAGTGACAAGACTTGCTGGTAGGCTCCCTTTGGG 737
Query 1543 ACTTAGGGTTATGGGTTCTCATTTCCGGGGAATGTCCAAGGAAGATTGGAAAGGGGAACT 1602
|||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||||||
Sbjct 738 ACTTAGGGTTATGGGTTCTCGTTTAAAAGGAATGTCCAAGGAAGAGTGGAAAGCGGAACT 797
Query 1603 ACCAAGGTTACGGATTCGCCTTGACGGAGAAATAGGGAGCATTTTAAAATTTAGTTACGA 1662
|||||||||| || |||||||| ||||||| ||| ||||||||||||| | |||||| ||
Sbjct 798 ACCAAGGTTAAGGGTTCGCCTTAACGGAGATATATGGAGCATTTTAAAGTATAGTTATGA 857
Query 1663 TGTCTTGGACGACGAAGACAAAGATTTGTTTCTCCATATAGCATGtttttttAACGACGA 1722
|| |||||||||||||||||||||||| |||||| ||||||| || ||||| ||||| ||
Sbjct 858 TGCCTTGGACGACGAAGACAAAGATTTATTTCTCTATATAGCCTGCTTTTTCAACGATGA 917
Query 1723 AGGCATTGATCATACCTTTGAAGATACTCTTCGTCACAAATTCTCAAACGTGCAGCGAGG 1782
| ||||||||||||||||||| |||||| || | || ||||| |||||||||| |||
Sbjct 918 AAGCATTGATCATACCTTTGAGGATACTTTTAAAAATAATTTCTCGAACGTGCAGCAAGG 977
Query 1783 GCTTCAGGTCTTAGTTCAAAGATCTCTCATATCCGAGGATTTA-ACTCAACCGATGCATA 1841
| ||| ||| ||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct 978 GTTTCGGGTTTTAGTTCAAAGATCTCTCATATCCGAGGAGAGATAC-CAACCGATGCATA 1036
Query 1842 ATCTACTAGTTCAATTGGGTAGAGAAATTGTTCGTAACCAATCCGTTTATGAACCTGGGA 1901
||||||||||||||||||||||||||||||| ||||| |||||| |||| |||||||
Sbjct 1037 ATCTACTAGTTCAATTGGGTAGAGAAATTGTGCGTAAGCAATCCA---ATGAGCCTGGGA 1093
Query 1902 AACGTCAATTTCTAGTTGATGGAAAGGA-GATTTGTGAAGTACTTACT-AGTCATACAGG 1959
||||||||||| |||||||| | ||| | ||||||||||||| ||| | |||||||||
Sbjct 1094 AACGTCAATTTTTAGTTGATCCTAGGGATG-TTTGTGAAGTACTCACTGA-TCATACAGG 1151
Query 1960 AAGTGAAAGTGTTATAGGCATAAATTTCGAAGTTTATTG-GAGCATGGACGAACTAAATA 2018
|||||||||||||||||| ||| ||| ||||||||| | || | | ||| |||||||||
Sbjct 1152 TAGTGAAAGTGTTATAGGCCTAAGTTTGGAAGTTTAT-GAGAACGTAGACAAACTAAATA 1210
Query 2019 TAAGTGATAGAGTTTTTGAAGGAATGTCTAATCTTCAATTTTTTAGATTCGATGAAAATT 2078
||||||| |||| ||||||| ||||||||||||||||||||| ||| || | |||
Sbjct 1211 TAAGTGAGAGAGCTTTTGAAAAAATGTCTAATCTTCAATTTTTGAGAATCTTT-AAA--- 1266
Query 2079 CTTATGGAAGATTGCACTTGCCACAAGGTCTAAACTATCTACCTCCAAAACTTAGAATTC 2138
||||||| |||||| ||||||| ||||||| ||||||||||||| ||||||||||
Sbjct 1267 -----GGAAGATGGCACTTACCACAAGTTCTAAACAATCTACCTCCAAATCTTAGAATTC 1321
Query 2139 TACATTGGGATTACTATCCGATGACAAGTTTGCCTTCTAAGTTTAATCTGAAGTTTCTTG 2198
|| | |||||| | ||||| ||| || ||||||||||||||||||||| | |||| ||||
Sbjct 1322 TAGAATGGGATGATTATCCAATGTCATGTTTGCCTTCTAAGTTTAATCCGGAGTTCCTTG 1381
Query 2199 TCAAGATAATATTGAAACACAGTGAGCTCGAGAAACTGTGGGAAGGAATTCAAC--CG-C 2255
|||||||| |||||||| ||| ||||||||||||||||||||| || ||||| || |
Sbjct 1382 TCAAGATATTATTGAAAGGCAGCAAGCTCGAGAAACTGTGGGAAGAAAATCAACAGCGGC 1441
Query 2256 TTGTCAATCTCAAGGTGATGGATTTACGTTATTCTAGTCA-TTTGAAAGAGCTTCCTAAT 2314
|| ||||||||||||||||||||||||| ||||| || | |||||| ||||||||||||
Sbjct 1442 TTATCAATCTCAAGGTGATGGATTTACGCTATTC-AGAAAATTTGAAGGAGCTTCCTAAT 1500
Query 2315 CTCTCAACAG-CCATTAATCTC 2335
||||||| || ||| |||||||
Sbjct 1501 CTCTCAA-AGGCCACTAATCTC 1521
Score = 737 bits (399), Expect = 0.0
Identities = 512/564 (91%), Gaps = 17/564 (3%)
Strand=Plus/Plus
Query 326 TCTTCAACATCTCCTCCATCTACGTTGTCTTCTTCAACA--T-CT-CATC--C---GTCT 376
||||| |||||||||||||| ||||||||||||| |||| | || | || | ||||
Sbjct 121 TCTTCTACATCTCCTCCATCCACGTTGTCTTCTTTAACATCTCCTCCGTCTTCTTTGTCT 180
Query 377 TCTTCAACTTCTCCTCCATCATCTTTGTCTTGCACCGGGACTCACCATGTATTTCCAAGC 436
||||||||||||||| |||| ||||||||||||||||||||||||||||| ||| | |||
Sbjct 181 TCTTCAACTTCTCCTTCATCTTCTTTGTCTTGCACCGGGACTCACCATGTCTTTGCGAGC 240
Query 437 TTCCGTGGGGATGACGTTCGCAG-AAACTTTCTCAGTCACATTCAAAAGGAGTTTCGGAG 495
||||||||||| ||||||||||| ||| ||| | ||| |||||||| ||||||||| ||
Sbjct 241 TTCCGTGGGGAAGACGTTCGCAGAAAAATTT-TAAGTTACATTCAACAGGAGTTTCAAAG 299
Query 496 AAAAGGAATCACTCCGTTCATCGATAATGAGATTAGGAGAGGAGAATCCATCGGTCCTGA 555
||||||||||| ||||||||| ||||||||||| | | ||||||||||||| ||||||||
Sbjct 300 AAAAGGAATCATTCCGTTCATTGATAATGAGATCAAGCGAGGAGAATCCATTGGTCCTGA 359
Query 556 ACTCATTAAGGCCATTAGAGAATCTAAGATCGCAATTGTTC-TGCTCTCGAGGAACTATG 614
||||||||||||||||||||||||||||||||| |||| || | ||||||||||||||||
Sbjct 360 ACTCATTAAGGCCATTAGAGAATCTAAGATCGCGATTG-TCTTACTCTCGAGGAACTATG 418
Query 615 CTTCTTCAAAGTGGTGTCTTGAAGAATTGGTGGAGATTATGAAATGCAAGAAAGAGTTTG 674
|||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||
Sbjct 419 CTTCTTCAAAGTGGTGTCTTGACGAATTGGTGGAGATTATGGAATGCAAGAAAAAGTTTG 478
Query 675 GTCTAACAGTGTTTGCCA-TTTTCTATGAAGTTGATCCATCCCATGTTAAGAAGCTTACC 733
||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||
Sbjct 479 GTCTAACAGTGTTTG-TAGTTTTCTATGAAGTTGATCCATCCCATGTTAAGAAGCTGACC 537
Query 734 GGAGAATTTGGAGCTGTCTTTCAGAAAACTTGTAAGGGTAGAACAAAGGAGAATATTATG 793
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 538 GGAGAATTTGGAGCTGTCTTTCAGAAAACTTGTAAGGGTAGAACAAAGGAGGAGATT-TG 596
Query 794 -AGATGGAGACAAGCTTTTGAGGAGGTTGCTACAATTGCTGGTTACGATTCAAGAAACTG 852
||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||
Sbjct 597 GAGATGGAGACAAGCTTTTGAGGAAGTGGCTACAATTGCTGGTTACGATTCAAGAGACTG 656
Query 853 GGAAAATGAAGCTGCCATGATTGA 876
||||||||||||||||||| ||||
Sbjct 657 GGAAAATGAAGCTGCCATGGTTGA 680
Score = 455 bits (246), Expect = 2e-126
Identities = 333/375 (89%), Gaps = 5/375 (1%)
Strand=Plus/Plus
Query 3785 CTCAACAAATGCACGAAGCTGGTATCACTCCCGCAGCTTCCAGATTCCTTATCAGTTTTA 3844
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1864 CTCAACAAATGCACGAAGTTGGTATCACTCCCGCAGCTTCCAAATTCCTTATCAATTTTA 1923
Query 3845 GTTGCAGAATCATGTGAGTCCTTGGAGACACTTGCTTGCTCCTTTCCGAATCCCCAAGTT 3904
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1924 AATGCAGAATCATGTGAGTCCTTGGAGACACTTGCTTGCTCCTTTCCTAATCCCAAAGTT 1983
Query 3905 TGGCTCAAATTTATTGACTGCTGGAAACTGAATGAAAAAGGGAGAGATATCATCGTCCAG 3964
|| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1984 TGTCTCAAATTTATTGACTGCTGGAAACTGAATGAAAAAGGGAGAGACATCATCATCCAG 2043
Query 3965 ACATCGACAAGTAACTACACGATGTTACCAGGTAGAGAAGTGCCTGCGTTTTTCACTTAC 4024
||||||||||||| ||| |||| || |||||||||||| | |||||||| ||| |||||
Sbjct 2044 ACATCGACAAGTAGTTACGCGATCTTGCCAGGTAGAGAAATTCCTGCGTTCTTCGCTTAC 2103
Query 4025 CGAGCTACCACTGGAGGTTCTCTGGCAGTGAAGTTGAATGAGAGGCAT-TGTCGTACATC 4083
|||||||| |||||||||||| ||||||||||||| ||| |||||| | | || ||||||
Sbjct 2104 CGAGCTACTACTGGAGGTTCTGTGGCAGTGAAGTTTAATCAGAGGCGTCT-TCCTACATC 2162
Query 4084 TTGTAGATTTAAAGCTTGCATCTTGCTGGTT-AGAAAGGGTGACAAAATTGACTGTGAGG 4142
|| ||||||||| |||||||||||||||||| | || |||||| || ||| | | ||
Sbjct 2163 TTTTAGATTTAAGGCTTGCATCTTGCTGGTTTACAA-GGGTGATGAAGCTGATTACGCGG 2221
Query 4143 AATGGGGGTCCGTAT 4157
||||||| ||| |||
Sbjct 2222 AATGGGG-TCCATAT 2235
Score = 147 bits (79), Expect = 1e-33
Identities = 137/164 (84%), Gaps = 8/164 (5%)
Strand=Plus/Plus
Query 4225 TTTAACTGAGCATCTGTACACATTCGAAATCGAAG-CAAAAGGTGTGAAATCC-GTAGAG 4282
|||||| ||||||||||||| ||||||||| |||| |||| |||| ||||| | ||||
Sbjct 2235 TTTAACGGAGCATCTGTACATATTCGAAATGGAAGTTAAAA-ATGTGGAATCCAG-AGAG 2292
Query 4283 CTTGTCATT-AAGTTC-CAATTCGGCAGGAAAAAATGGGAGATAGGTGAATGCGGGATAC 4340
|| || || |||||| || | ||| | | ||||||||||||| ||||||||||||
Sbjct 2293 ATTTTC-TTAAAGTTCGGAA-CCCACAGTAGCATATGGGAGATAGGTAAATGCGGGATAC 2350
Query 4341 GCCCACTCTTGGAGGAGGACACTCACGTCGAAAGTTCTATATAA 4384
|||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 2351 GCCCACTCTTGGAGGACGACACTCACGTCGAAGGTTCTATATAA 2394
> Ahg889979 jgi|Araly1|889979|Al_scaffold_0007_1965
Length=1731
Score = 507 bits (274), Expect = 4e-142
Identities = 685/875 (78%), Gaps = 61/875 (7%)
Strand=Plus/Plus
Query 389 CCTCCATCATCTTTGTCTTGCACCG-GGACTCACCATGTATTTCCAAGCTTCCGTGG-GG 446
|||||||| |||||||||| || | ||| ||| | || ||||||||||||||||| |
Sbjct 115 CCTCCATCTTCTTTGTCTTACA-AGTGGAAACACGACGTCTTTCCAAGCTTCCGTGGTGT 173
Query 447 ATGACGTTCG-CAGAAACTTTCTCAGTCACATTCAAAAGGAGTTTCGGAGAAAAGGAATC 505
| || || || | | ||||||||||||| ||||| |||||||| | ||||||||||||
Sbjct 174 A-GATGTCCGTC-GGGACTTTCTCAGTCATATTCAGAAGGAGTTCCAAAGAAAAGGAATC 231
Query 506 ACTCCGTTCATCGATAATGAGATTAGGAGAGGAGAATCCATCGGTCCTGAACTCATTA-A 564
|| |||||||||||||||||||| | ||||||||||||||| ||||||||||| | || |
Sbjct 232 ACACCGTTCATCGATAATGAGATCAAGAGAGGAGAATCCATTGGTCCTGAACTTA-TACA 290
Query 565 GGCCATTAGAGAATCTAAGATCGCAATTGTTC-TGCTCTCGAGGAACTATGCTTCTTCAA 623
||||||||||| ||||||||||| | | || ||||||| | |||||||||||||||||
Sbjct 291 GGCCATTAGAGGGTCTAAGATCGCGA-TCATCTTGCTCTCAAAGAACTATGCTTCTTCAA 349
Query 624 AGTGGTGTCTTGAAGAATTGGTGGAGATTATGAAATGCA-AGAAAGAGTTTGGTCTAACA 682
||||||||||||| |||||||||||||||||||| || | |||| ||||| |||| |||
Sbjct 350 AGTGGTGTCTTGACGAATTGGTGGAGATTATGAAGTGTAGAGAA-GAGTTAGGTCAAACT 408
Query 683 GTGTTTGCCATTTTCTATGAAGTTGATCCATCCCATGTTAAGAAGCTTACCGGAGAATTT 742
||| | |||||||||||| |||| ||||||| |||| ||||||| ||||||||||
Sbjct 409 GTGATGGCCATTTTCTATAAAGTAGATCCATATGATGTAAAGAAGCAGGTCGGAGAATTT 468
Query 743 GG-A-GCTGTCTTTCAGAAAA-CTTGTAAGGGTAGA-ACAAAGGAGAATATTATGAGATG 798
|| | | || |||||||||| ||||| |||| | || |||||| | |||| |||||
Sbjct 469 GGCAAG--GT-TTTCAGAAAAACTTGTGCTGGTA-ACACTAAGGAGGACATTAAAAGATG 524
Query 799 GAGACAAGCTTTTG-AGGAGGTTGCTACAATTGCTGGTTACGATTCAAGAAACTGGGAAA 857
|||||||||||| | | || | || |||||||| |||||| ||||||| || ||||| |
Sbjct 525 GAGACAAGCTTTAGGAAAAG-TGGCCACAATTGCGGGTTACCATTCAAGCAATTGGGATA 583
Query 858 ATGAAGCTGCCATGATTGAAGAAATT-GCCATTGAAATTTCCAAA-AGATTGATTAATTC 915
||||||| |||||||| ||| | | | |||||||| ||||||| || | ||||| |||
Sbjct 584 ATGAAGCGGCCATGATCGAA-AGACTCGCCATTGATGTTTCCAATGAGCT-GATTAGTTC 641
Query 916 CT-CACCGT-TCAGTGGGTTTGAAGGTTT-GATTGGGATGAAAGCTCATATAGAAAAGAT 972
| | || | | |||| ||||| ||||| | |||| |||||||||||||| ||||| ||
Sbjct 642 -TGCGCCATCT-AGTGATTTTGACGGTTTTG-TTGGAATGAAAGCTCATATGGAAAATAT 698
Query 973 -GAAACAGTTGCTTT-GCCTCGATTCAACAGATGAAAGG-AGGACGGTTGGTATTTCAGG 1029
||| || || ||| |||| || || |||||| | | | | | || |||| ||
Sbjct 699 AGAACCA-TT-CTTCCGCCTAGACTCG---GATGAA-GTCAAAATGATAGGGATTTGTGG 752
Query 1030 TCCTTCTGGAATTGGTAAGAGCACTATTGCTAGAGTTCTACATAATCAA-ATCTCTGATG 1088
|||||||||||||||||||||||| ||||| ||| || || | | || | |||| |||
Sbjct 753 TCCTTCTGGAATTGGTAAGAGCACCATTGCCAGATTTATATTTGGTGAATA-CTCTCATG 811
Query 1089 -GTTTTCAAA-TGAGTGTTTTCATG-AAA-T-TCAAACCAAGTTATACAAGACCAATTTG 1143
||| | | | ||||| |||||| ||| | ||||| | ||||| ||||||| || |
Sbjct 812 AGTT--CGAGCTAAGTGTCTTCATGGAAAATATCAAAAGACGTTATCCAAGACC--TT-G 866
Query 1144 TT-CTGATGA-T-CACGATGTGAAGTTGCAATTAGAGCAGCAATTTCTAG-CTCAATTGA 1199
|| | ||||| | || | | |||| ||||||||| | || | ||| | | ||||| | |
Sbjct 867 TTAC-GATGAGTACA-G-TATGAAATTGCAATTACAAAAGGAGTTTTT-GTCTCAAATAA 922
Query 1200 TTAACCAAGAGGATATCAAGATTCATCAGTTAGGA 1234
| ||||| |||||||| ||||||||||| ||||||
Sbjct 923 TGAACCAGGAGGATATAAAGATTCATCATTTAGGA 957
> Ahg476559 jgi|Araly1|476559|fgenesh2_kg.2__1689__AT1G74220.1
Length=975
Score = 357 bits (193), Expect = 5e-97
Identities = 273/308 (89%), Gaps = 20/308 (6%)
Strand=Plus/Minus
Query 4487 CGTGAAGCTATTATTACCAATATGGATACTGAAAAGAGATTCATTGGAGACAATGCTCCA 4546
|||||||||||| ||||| || ||||| |||||||||||||||||||| | | |||||||
Sbjct 378 CGTGAAGCTATTGTTACCCATGTGGATGCTGAAAAGAGATTCATTGGACATAGTGCTCCA 319
Query 4547 TTCAACTGGAGCTGTAGAGGTTGTTCTTGCGAAAACATGTGAAGGGATTCTGTAAGGAGG 4606
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 TT---CTGGAGCTGTAGAGGTTGTTCTTGCGAAAACATGTGAAGGGATTCTGTAAGGAGG 262
Query 4607 TTTATTAGGGCTCGAGGTC-TT-T-GTTGTTGT-GTTGTTA-GT-G---G---ATCTTTC 4654
| ||||||||||||| ||| || | |||||||| |||||| || | | |||||||
Sbjct 261 TGTATTAGGGCTCGAAGTCGTTGTTGTTGTTGTTGTTGTTGTGTTGTTTGTGGATCTTTC 202
Query 4655 CATGACTTGTGTCGGAAGATATTGCTCTACATTGTT-TT-AGAATCTGATCAGGTCTTGG 4712
|||||| ||||||||| || |||||||||||||||| || ||| ||||||||||||||||
Sbjct 201 CATGACCTGTGTCGGAGGAGATTGCTCTACATTGTTGTTTAGATTCTGATCAGGTCTTGG 142
Query 4713 TTCGCGGCTTCTATGgaagaataagaagaggaagaagaagaagaaagTCTTGAGATTGGA 4772
|||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 141 TTCG-G-CTTCTATGGAAGAACAAGAAGAGGAAGAAGAAGAAGAAAGTCTTGAGATTGGA 84
Query 4773 TCTTGCTG 4780
|||| |||
Sbjct 83 TCTT-CTG 77
> Ahg896915 jgi|Araly1|896915|Al_scaffold_0005_881
Length=3243
Score = 161 bits (87), Expect = 4e-38
Identities = 270/355 (76%), Gaps = 25/355 (7%)
Strand=Plus/Plus
Query 3785 CTCAACAAATGCACGAAGCTGGTATCACTCCCGCAGCTTCCAGATTCCTTATCAGTTT-T 3843
|||||| ||||| |||||| ||||||||||| ||||||||||||||||||||| | |
Sbjct 2668 CTCAACGGATGCAAGAAGCTAGTATCACTCCCACAGCTTCCAGATTCCTTATCA-TACCT 2726
Query 3844 AGTTGCAG-AATCAT-GTGAGTCCTTGGAGACACTTGCTTGCTCCTTTC-CGAATCCCCA 3900
|| |||| || || ||||||| ||||||| ||||| || ||||||| | ||||| |
Sbjct 2727 AGAGGCAGTAA--ATTGTGAGTCATTGGAGAGACTTGATTTCTCCTTTTAC-AATCCA-A 2782
Query 3901 AGTT-TGGCTCAAATTTATTGACTGCTGGAAACTGAATGAAA-AAGGGAGAGATA-TCAT 3957
|| | | ||||| ||| || |||||| ||| ||||| ||| ||| || || | ||||
Sbjct 2783 AGATATATCTCAACTTTGTTAACTGCTTCAAATTGAAT-AAAGAAGCCAGGGA-ACTCAT 2840
Query 3958 CGTCCAGACATCG-ACAAGTAACTACACGATGTTACCAGGTAGAGAAGTGCCTGCGTTTT 4016
| ||||||| | | || | | ||| || | ||||| ||| ||||||||||||| |
Sbjct 2841 CATCCAGAC-TAGTACT-G-A-CTATGCGGTCTTACCTGGTGGAGAAGTGCCTGCAAAAT 2896
Query 4017 TCACTTACCGAGCTACCACTGGAGGTTCTC-TGGCAGTGAAGTTGAATGAGAGGCAT-TG 4074
||||||||||||||| | ||| ||| | || ||| || |||||| | |||| | |
Sbjct 2897 TCACTTACCGAGCTAATAGAGGAAATTC-CATGATAGTAAACTTGAATCATAGGCCTCTT 2955
Query 4075 TCGTACATCTTGTAGATTTAAAGCTTGCATCTTGCTGGTTAG-AAAGGGTGACAA 4128
|| ||| | | |||||||||||||||||||||||||||| |||||| |||||
Sbjct 2956 TCA-ACAACCTCAAGATTTAAAGCTTGCATCTTGCTGGTTAATAAAGGG-GACAA 3008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 196833767556
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5