BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69560.1
Length=1181
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476090 jgi|Araly1|476090|fgenesh2_kg.2__1220__AT1G69560.1 1628 0.0
Ahg488646 jgi|Araly1|488646|fgenesh2_kg.6__1780__AT5G17800.1 135 5e-31
> Ahg476090 jgi|Araly1|476090|fgenesh2_kg.2__1220__AT1G69560.1
Length=1050
Score = 1628 bits (881), Expect = 0.0
Identities = 997/1054 (95%), Gaps = 4/1054 (0%)
Strand=Plus/Plus
Query 109 ATGTCGGAAGATCAACACCATTCGATGGATCAGACCACTTCATCGGACTACTTCTCTTTA 168
||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGTCGGAAGATCAACACCGTTGGATGGATCAGATTGCTTCATCGGACTACTTCTCTTTA 60
Query 169 AATATCGACAATGCTCAACATCTCCGTAGCTACTACACAAGTCATAGAGAAGAAGACATG 228
|| |||||||| | |||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 61 AACATCGACAACGATCAACATCTCCGTAGCTACTACACAAGTCATAGAGAAGAAGAGAGG 120
Query 229 AACCCTAATCTAAGTGATTACAGTAATTGCAACAAGAAAGACACAACAGTCTATAGAAGC 288
|||||||||| ||||||||||||||| |||||||||||||| |||||||||||| |||||
Sbjct 121 AACCCTAATCAAAGTGATTACAGTAACTGCAACAAGAAAGATACAACAGTCTATGGAAGC 180
Query 289 TGTGGACACTCGTCAAAAGCTTCGGTGTCTAGAGGACATTGGAGACCAGCTGAAGATACT 348
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 TGTGGACACTCGTCAAAAGCTTCGGTGTCGAGAGGACATTGGAGACCAGCTGAAGATACC 240
Query 349 AAGCTCAAAGAACTAGTCGCCGTCTACGGTCCACAAAACTGGAACCTCATAGCTGAGAAG 408
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 241 AAGCTCAAAGAACTAGTCGCTGTCTACGGCCCACAAAACTGGAACCTCATAGCTGAAAAG 300
Query 409 CTCCAAGGAAGATCCGGGAAAAGCTGTAGGCTTCGATGGTTTAACCAACTAGACCCAAGG 468
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 301 CTCCAAGGAAGATCCGGGAAAAGCTGTAGACTTCGATGGTTTAACCAACTAGACCCGAGG 360
Query 469 ATAAATAGAAGAGCCTTCACTGAGGAAGAAGAAGAGAGGCTAATGCAAGCTCATAGGCTT 528
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATAAATAGAAGAGCCTTTACAGAGGAAGAAGAAGAGAGGCTAATGCAAGCTCATAGGCTT 420
Query 529 TATGGTAACAAATGGGCGATGATAGCGAGGCTTTTCCCTGGTAGGACTGATAATTCTGTG 588
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 TATGGTAACAAATGGGCGATGATAGCGAGGCTTTTCCCTGGGAGGACTGATAATTCTGTG 480
Query 589 AAGAACCATTGGCATGTTATAATGGCTCGCAAGTTTAGGGAACAATCTTCTTCTTACCGT 648
|||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||
Sbjct 481 AAGAACCATTGGCATGTTATAATGGCTCGCAAGTTTAGAGAGCAATCTTCTGCTTACCGT 540
Query 649 AGGAGGAAGACGATGGTTTCTCTTAAGCCACTCATTAACCCTAATCCTCACATTTTCAAT 708
||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 541 AGGAGGAAGACGATGCTTCCTCTTAAGCCACTCATTAACCCTAATCCTCACCTTTTCAAT 600
Query 709 GATTTTGACCCTACCCGGTTAGCTTTGACCCACCTTGCTAGTAGTGACCATAAGCAGCTT 768
| |||||||||||| ||||||||||||||||||||| ||||| |||||| ||| |||||
Sbjct 601 GCTTTTGACCCTACTAGGTTAGCTTTGACCCACCTTGTTAGTAATGACCAGAAGGAGCTT 660
Query 769 ATGTTACCAGTTCCTTGCTTCCCAGGTTATGATCATGAAAATGAGAGTCCATTAATGGTG 828
||||| ||| ||||||||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct 661 ATGTTGCCAATTCCTTGCTTCCCAGGTTATGATCATGGAAATGAGATTCCGTTAATGGTG 720
Query 829 GATATGTTCGAAACCCAAATGATGGTTGGCGATTACATTGCATGGACACAAGAGGCAACT 888
||||||||| ||| | |||||||||| ||||| ||||||||||||||||||||| |||||
Sbjct 721 GATATGTTCCAAAACGAAATGATGGTCGGCGAATACATTGCATGGACACAAGAGTCAACT 780
Query 889 ACATTCGATTTCTTAAACCAAACCGGGAAGAGTGAGATATTTGAAAGAATCAATGAGGAG 948
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 781 ACATTCGATTTCTTAAAACAAACCGGGAAGAGTGAGATGTTTGAAAGAATGAATGAGGAG 840
Query 949 AAGAAACCACCATTTTTCGATTTTCTTGGGTTGGGGACGGTGTGATCATCATCGATCATG 1008
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 841 AAGAAACCACCATTTTTCGATTTTCTTGGGTTGGGGACGGTGTG---ATCATC-ATCATG 896
Query 1009 AACAAGACTGGCTTGAGTTAGTTAACAAAAGTTATGAGATGATTTGAGTCCTTGTCGATG 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 AACAAGACTGGCTTGAGTTAGTTAACAAAAGTTATGAGATGATTTGAGTCCTTGTCGATG 956
Query 1069 TAGTTATGTTGCGTTAATAATTGTAGATTAAATGTTGTTGTCCTTAGTCACATGCAACAT 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TAGTTATGTTGCGTTAATAATTGTAGATTAAATGTTGTTGTCCTTAGTCACATGCAACAT 1016
Query 1129 TCCTTACCCCGTGTTAATTAGCACGTACATATAT 1162
|||||||||| |||||||||| ||||||||||||
Sbjct 1017 TCCTTACCCCTTGTTAATTAGTACGTACATATAT 1050
> Ahg488646 jgi|Araly1|488646|fgenesh2_kg.6__1780__AT5G17800.1
Length=1162
Score = 135 bits (73), Expect = 5e-31
Identities = 231/306 (75%), Gaps = 16/306 (5%)
Strand=Plus/Plus
Query 320 GAGGACATTGGAGACCAGCTGAAGATACTAAGCTCAAAGAACTAGTCG-CC-GTCTACGG 377
||||||| ||||||||| | |||||| |||| ||||| || || || | || || | ||
Sbjct 278 GAGGACACTGGAGACCAACAGAAGATGCTAAACTCAAGGAGCTTGTTGCCCAGT-T-TGG 335
Query 378 TCCACAAAACTGGAACCTCATAGCTGAGAAGCTCCAAGGAAGATCCGGGAAAAGCTGTAG 437
||| |||||||||||| | || ||| | | || | || ||||| || || || ||||
Sbjct 336 TCCCCAAAACTGGAACTTGATTGCTCACCACCTTCTTGGTAGATCAGGCAAGAGTTGTA- 394
Query 438 GCTT-CGATGGTTTAACCAACTAGACCCAAGGATAAATA-GAAGAGCCTTCACTGAGGAA 495
| || |||||||||||||||||||||||||||| || | || |||||||||| ||||||
Sbjct 395 GATTGAGATGGTTTAACCAACTAGACCCAAGGATTAACAAGA-GAGCCTTCACGGAGGAA 453
Query 496 GAAGAAGAG-AGGCTAAT-GCAAGCTCATAG-GCTTTATGGTAACAAATGGGCGATGATA 552
||||| | ||||| | ||| ||||| | || | |||| ||||| ||||| ||||
Sbjct 454 GAAGA-GCTTAGGCTTTTAGCA-GCTCACCGAGCCT-ATGGCAACAAGTGGGCTTTGATC 510
Query 553 GCGAGGCTTTTCCCTGGTAGG-ACTGATAATTCTGTGAAGAACCATTGGCATGTTATAAT 611
| | || ||||| || | | || ||||| | || |||||||| ||||| || || ||
Sbjct 511 TCTCGTCTCTTCCCCGG-ACGTACCGATAACGCCGTCAAGAACCACTGGCACGTCATCAT 569
Query 612 GGCTCG 617
||||||
Sbjct 570 GGCTCG 575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44070092052
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5