BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69570.1
Length=1709
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476091 jgi|Araly1|476091|fgenesh2_kg.2__1221__AT1G69570.1 2438 0.0
> Ahg476091 jgi|Araly1|476091|fgenesh2_kg.2__1221__AT1G69570.1
Length=1673
Score = 2438 bits (1320), Expect = 0.0
Identities = 1596/1719 (93%), Gaps = 59/1719 (3%)
Strand=Plus/Plus
Query 1 AGCGTGAAAAAGATCTCAAAATGCCCACTTTCTTCACAAACATGTGGctctcctatttct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 AGCGTGAAAAAGATCTCAAAATGCCCACTTTCTTCACAAACATGTGGCTCTCATATTTCT 60
Query 61 acatgtctctctctctattctgacgtgtaattttctctcttcctctctcccttctAATGC 120
|||||||||||||||||||||||||||| | || || ||||| ||||| ||||
Sbjct 61 ACATGTCTCTCTCTCTATTCTGACGTGT-A------CT-TT--TCTCT--CTTCT-ATGC 107
Query 121 ACTATCTATCGTCATTAATACCAACCTCAAG-CCC--CTTGTTTTCTCTTCATGCTCttt 177
||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct 108 ACTATCTATCGTCATTAATACCAACCTCAAGCCCCTTCTTGTTTTCTCTTCATACTCTTT 167
Query 178 ttttCTTCCCTCCGATCTTCATAGAGaaaaaaaaaCCAGAGGAAACCATTTATTAGACCT 237
|||| || |||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 168 TTTT-TT-CCTCCGATCTTCATAGAG-AAAAAAAA-CAGAGGAAACCATTTATTAGACCT 223
Query 238 TCATATCTCTAGAACTTTCATAATTAGTTATGTCTAAATCTAGAGATACGGAGATAAAGT 297
|||||| ||||||| ||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 224 TCATATTTCTAGAAGTTTCATAATTAGTTATGTCTAAATCTATAGATAGGGAGATAAAGT 283
Query 298 TGTTTGGGAGGACAATCACATCTCTTTTAGATGTGAATTGTTATGATCCGTCGTCGTTGT 357
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||
Sbjct 284 TGTTTGGGAGGACAATCACATCTCTTTTAGATGTGAATCGTTATGATCCATCGTCTTTGT 343
Query 358 CCCCTGTTCACGATGTTTCTTCTGATCCAAGCAAGGAGGATTCGTCTTCTTCTTCATCTT 417
||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||
Sbjct 344 CCCCTGTTCACGATGTTTCTTCTGATCAAAGCAAGGAGGATTCGTCATCTTCTTCTTCTT 403
Query 418 CTTGTTCTCCAACTATTGGACCAATCAGGGTTCCGGTTaaa-aaaaGTGA-GCAAGAGAG 475
|||||||||||||||||||||||||||||||||||| ||| || ||||| | |||||||
Sbjct 404 CTTGTTCTCCAACTATTGGACCAATCAGGGTTCCGG-CAAATAATAGTGATG-AAGAGAG 461
Query 476 TAACAAATTCAAAGATCCATATATATTATCCGATCTAAACGAACCACCAAAAGCAGTATC 535
||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 462 TAACAGATTCAAAGATCCATACATATTATCAGATCTAAACGAACCACCAAAAGCAGTATC 521
Query 536 TGAGATTTCATCACCAAGAAGTTCCAAGAACAACTGTGATCAACAGAGCGAGATCACAAC 595
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 522 TGAGATTTCATCACCAAGAAGTTCCAAGAACAATTGTGATCAACAGAGCGAGAT-----C 576
Query 596 AACAACTACCACAAGTACTACATCAGGAGAGAAATCAACGGCTCTCAAGAAACCGGACAA 655
|| || | |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 577 -ACGAC-A--ACAAGTACTACATCAGGAGAGAAATCAACGGCTCTCAAGAAACCAGACAA 632
Query 656 GCTTATTCCATGTCCTAGATGTGAAAGCGCAAACACCAAATTCTGTTATTACAACAACTA 715
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 GCTTCTTCCATGTCCTAGATGTGAAAGCGCAAACACCAAATTCTGTTATTACAACAACTA 692
Query 716 CAACGTGAACCAGCCACGTTACTTCTGCAGGAACTGTCAGAGGTATTGGACAGCTGGTGG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 CAACGTGAACCAGCCACGTTACTTCTGCAGGAACTGTCAGAGGTATTGGACAGCTGGTGG 752
Query 776 ATCTATGAGGAACGTTCCTGTTGGCTCAGGTCGTCGCAAGAACAAAGGATGGCCTTCTTC 835
|||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||
Sbjct 753 ATCTATGAGGAACGTTCCCGTTGGCTCAGGCCGTCGCAAGAACAAAGGATGGGCTTCTTC 812
Query 836 AAACCATTACTTGCAAGTCACTTCTGAGGATTGTGATAATAATAACTCGGGGACGATCCT 895
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 813 AAACCATTACTTGCAAGTCACTTCTGAGGATTGTGATAATAATAACTCCGGGACGATCCT 872
Query 896 TAGTTTCGGTTCTTCGGAGTCTTCGGTTACAGAGACTGGTAAGCATCAGTCAGGTGATAC 955
||| |||||||||||||| |||||||| |||||| ||||||||||||| ||| | |||||
Sbjct 873 TAGCTTCGGTTCTTCGGAATCTTCGGTGACAGAGGCTGGTAAGCATCAATCAAGAGATAC 932
Query 956 AGCAAAGATAAGTGCTGATTCAGTTTCTCAAGAAAATAAAAGCTACCAAGGGTTTCTTCC 1015
| |||| ||||| |||||||||||||| |||||| |||| ||||||||||||||||||
Sbjct 933 AACAAAAATAAGCGCTGATTCAGTTTCCCAAGAACGCAAAACCTACCAAGGGTTTCTTCC 992
Query 1016 TCCGCAAGTAATGTTACCTAATAATTCTTCTCCTTGGCCTTACCAATGGAGTCCAACGGG 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 TCCGCAAGTAATGTTACCTAATAATTCTTCTCCTTGGCCTTACCAATGGAGTCCAACGGG 1052
Query 1076 TCCTAACGCTAGTTTCTACCCTGTCCCCTTCTACTGGGGATGCACGGTTCCGATATACCC 1135
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1053 TCCTAATGCTAGTTTCTACCCTGTCCCCTTCTATTGGGGATGCACGGTTCCGATATACCC 1112
Query 1136 TACCTCAGAGACTTCATCATGTTTAGGAAAACGGTCAAGAGATCAAACTGAAGGAAGAAT 1195
|||||| || |||||| | |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1113 TACCTCCGATACTTCACCGTGTTTAGGAAAACGATCAAGAGATCAAACTGAAGGAAGAAT 1172
Query 1196 CAATGATACTAATACAACAATAACTACTACAAGAGCAAGATTGGTCTCAGAATCTCTTAG 1255
|||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1173 CAATGATACTAATACAACGATAACTTCTACAAGAGCAAGATTGGTTTCAGAATCTCTTAG 1232
Query 1256 AATGAATATCGAAGCTAGTAAGAGCGCTGTGTGGTCTAAGTTACCGACAAAACCCGAGaa 1315
|||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1233 AATGAATAGCGAAGCTACTAAGAGCGCGGTGTGGTCTAAGTTACCGACAAAACCCGAGAA 1292
Query 1316 aaaaaCGCAAGGATTCAGTTTGTTCAATGGATTTGACACAAAGGGAAACAGCAACAGAAG 1375
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1293 AAAAACGCAAGGATTCAGTTTGTTCAATGGATTTGACACAAAGGGTAACAGCAACAGAAG 1352
Query 1376 TAGCTTGGTCTCCGAAACTTCTCACAGTCTACAAGCAAACCCTGCAGCGATGTCTAGAGC 1435
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 CAGCTTGGTCACTGAAACTTCTCACAGTCTACAAGCAAACCCTGCAGCGATGTCTAGAGC 1412
Query 1436 TATGAACTTCAGGGAGAGCATGCAACAATAATCAGACACTAATATAGATATATAT-T--- 1491
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1413 TATGAACTTCAGGGAGAGCATGCAACAATAATCAGACACTGATATAGATATATATATATT 1472
Query 1492 CATGAACTGAGAGATTTGAGTTTGGCTAATTGTTACCTTGTGGAAGAAGGCAAAGCTGTG 1551
||||||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 1473 CATGAACTGAGAGATTTGAGTTTAGCTAATTGTTACCTTGTGGAAGAAG-------T-T- 1523
Query 1552 TAGATAGTTTTGTTGTTTGGAACTAAGAGTAGATATAGTATTTACTGTT-GTACACAAAC 1610
| | ||| ||| | | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1524 T---T-GTT--GTT-TC-G-AACTAAGAGTAGATATAGTATTTACTGTTTGTACACAAAC 1574
Query 1611 AGAGATATTTTTGGAGCTGTAGATATTTCTCTCCATTGTGTGATGAAGTTGCAACATATA 1670
||| |||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1575 AGAAATATTTTTGGAGGTGTAGATATTTCTCTCCATTGTGCGATGAAGTTGCAAAATATA 1634
Query 1671 TAAACCTTTAGATTAATA-T--CTACGTGATCTATCTTG 1706
|||||||||||||||||| | |||||||||||||||||
Sbjct 1635 TAAACCTTTAGATTAATAATATCTACGTGATCTATCTTG 1673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64105882335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5