BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69580.2
Length=1198
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476093 jgi|Araly1|476093|fgenesh2_kg.2__1223__AT1G69580.2 1790 0.0
Ahg931834 jgi|Araly1|931834|scaffold_304291.1 215 7e-55
> Ahg476093 jgi|Araly1|476093|fgenesh2_kg.2__1223__AT1G69580.2
Length=1193
Score = 1790 bits (969), Expect = 0.0
Identities = 1127/1199 (94%), Gaps = 28/1199 (2%)
Strand=Plus/Plus
Query 1 ATGTTTCCAGATATGGAGTgaaagaagaag-aaaagaaaaagaaagaaaaaaaaCATCAA 59
||||||||||||||||||||| |||||||| ||||| ||||| || ||||||||||||||
Sbjct 1 ATGTTTCCAGATATGGAGTGAGAGAAGAAGAAAAAG-AAAAG-AA-AAAAAAAACATCAA 57
Query 60 CCACTCCAAAGATTTATATATATATCTATTAATCTCCATATCTTTGCCAACAAACCCAAC 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 CCACTCCAAAGATTTATATATATATCTATTAATCTCCATATCTTTGCCAACAAACCCAAC 117
Query 120 AATCTTTGAAAACAAATCACCCTTTCGTTTTTATTTAAATTTCTTGGGTCGTTTCTTAAA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AATCTTTGAAAACAAATCACCCTTTCGTTTTTATTTAAATTTCTTGGGTCGTTTCTTAAA 177
Query 180 TTTGTATGTGTTTATTAATGGAGATCAACAATAATGCCAACAATACTAATACTACTATTG 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 178 TTTGTATGTGTTTATTAATGGAGATCAACAATAATGCCAACAATACTAATACTAATA--- 234
Query 240 ATAATCACAAGGCAAAGATGAGCCTTGTGTTGTCAACGGATGCTAAGCCAAGGTTGAAAT 299
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 235 ATAATCACAAGGCAAAGATGAGCCTTGTGTTGTCAACAGATGCTAAGCCAAGATTGAAAT 294
Query 300 GGACTTGTGATCTTCATCACAAATTCATCGAAGCCGTTAATCAACTTGGAGGACCTAACA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GGACTTGTGATCTTCATCACAAATTCATCGAAGCCGTTAATCAACTTGGAGGACCTAACA 354
Query 360 AAGCAACACCTAAGGGTTTGATGAAGGTTATGGAGATTCCTGGGCTTACCTTATACCATC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 AAGCAACACCTAAGGGTTTGATGAAGGTTATGGAGATTCCTGGGCTTACCTTATACCATC 414
Query 420 TCAAGAGCCATTTACAGAAATATCGGTTAGGGAAGAGCATGAAGTTCGATGATAACAAGC 479
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 415 TCAAGAGTCATTTACAGAAATATCGGTTAGGGAAAAGCATGAAGTTCGATGATAACAAGC 474
Query 480 TAGAAG---TTTCCTCTGCATCAGAGAATCAAGAAGTTGAGAGTAAAAACGATTCAAGAG 536
| |||| |||||||||| ||||| ||||||||| |||||||||||||||||| ||||
Sbjct 475 TCGAAGCAGTTTCCTCTGCTTCAGAAAATCAAGAACCTGAGAGTAAAAACGATTCCAGAG 534
Query 537 ATCTCCGAGGCTGCAGTGTCACCGAAGAAAACAGCAATCCAGCTAAAGACAGAGGGCTAC 596
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 535 ATCTCCGCGGCTGCAGTGTCACCGAAGAAAACAGCAATCCAGCTAAAGACAGAGGGTTGC 594
Query 597 AAATCACAGAGGCTTTACAAATGCAGATGGAAGTTCAGAAGAAACTTCATGAACAAATCG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 AAATCACAGAGGCTTTACAAATGCAGATGGAAGTTCAGAAGAAACTTCATGAACAAATCG 654
Query 657 AAGTTCAGAGGCATTTGCAGGTGAAGATTGAGGCACAAGGAAAGTATCTACAGTCCGTTT 716
||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||
Sbjct 655 AAGTTCAGAGGCATTTGCAGGTGAAGATTGAGGCACAAGGAAAGTATTTACAATCTGTTT 714
Query 717 TAATGAAAGCTCAACAAACTCTCGCTGGCTACTCATCTTCAAATCTCGGCATGGATTTTG 776
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
Sbjct 715 TAATGAAAGCTCAACAAACTCTCGCTGGCTACACATCTTCAACTCTCGGCATGGATTTCG 774
Query 777 CGAGGACCGAGCTCTCTAGATTAGCTTCAATGGTGAACAGAGGCTGTCCAAGCACTTCGT 836
|||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 775 CGAGAACGGAGCTCTCTAGATTAGCTTCAATGGTGAATAGAGGCTGTCCAAGTTCTTCGT 834
Query 837 TCTCAGAGCTAACGCAAGTagaagaaga--a-gaag-a-a-g--G-TTTCTTGTGGTACA 887
|||||||||||||||||||||||||||| | |||| | | | | ||||||||||||||
Sbjct 835 TCTCAGAGCTAACGCAAGTAGAAGAAGAGGAAGAAGCAGAAGAAGGTTTCTTGTGGTACA 894
Query 888 AGAAACCAGAAAACAGAGGAATTAGTCAGCTGAGATGTTCAGTAGAGAGCTCGTTGACAT 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 AGAAACCAGAAAACAGAGGAATTAGTCAGCTGAGATGTTCAGTAGAGAGCTCGTTGACAT 954
Query 948 CTTCAGAGACCTCAGAGACAAAACTGGATACTGACAATAACCTTAATAAATCGATTGAAC 1007
||||||||| |||||||| |||||| || | |||||||||||||||||||| |||||| |
Sbjct 955 CTTCAGAGAGCTCAGAGATAAAACTTGAAAATGACAATAACCTTAATAAATTGATTGAGC 1014
Query 1008 TTCCGTTGATGGAGATCA-ACTCGGAAGTGATGA-AGGGGAAGAAGAGAAGCATAAACGA 1065
|||||||||||||||||| | || |||||||| | |||| |||||||||||| |||||||
Sbjct 1015 TTCCGTTGATGGAGATCACA-TCTGAAGTGATAACAGGG-AAGAAGAGAAGCTTAAACGA 1072
Query 1066 CGTCGTTTGCGTGGAGCAG---CCTCTAATGAAGAGAGCTTTTGGAGTTGATGATGATGA 1122
||||||||| || || ||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1073 CGTCGTTTGTGTTGAACAGAAGCCTCTAATGAAGAGGGCTTTTGGAGTTGATGATGATGA 1132
Query 1123 GCAT-TTGAAGTTGAGTTTGAATACTTACAAGAAAGACATGGAGGCGTGTACGAACATA 1180
|| | |||||| |||||||||||| ||||||||||||||||||| ||||| ||||||||
Sbjct 1133 GC-TCTTGAAGCTGAGTTTGAATAGTTACAAGAAAGACATGGAGACGTGTCCGAACATA 1190
> Ahg931834 jgi|Araly1|931834|scaffold_304291.1
Length=214
Score = 215 bits (116), Expect = 7e-55
Identities = 183/214 (86%), Gaps = 9/214 (4%)
Strand=Plus/Plus
Query 699 AGTATCTACAGTCCGTTTTAATGAAAGCTCAACAAACTCTCGCTGGCTACTCATCTTCAA 758
||||| |||| || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 AGTATTTACAATCTGTTTTAATGAAAGCTCAACAAACTCTCGCTGGCTACTCATCTTCCA 60
Query 759 ATCTCGGCATGGATTTTGCGAGGACCGAGCTCTCTAGATTAGCTTCAATGGTGAACAGAG 818
|||| ||||||| || || || || |||||||| |||||||||| |||| |||||||||
Sbjct 61 CTCTCCGCATGGACTTAGCAAGAACGGAGCTCTCCAGATTAGCTTTAATGTTGAACAGAG 120
Query 819 GCTGTCCAAGCACTTCGTTCTCAGAGCTAACGCAAGTagaa-ga-agaa-gaag-a-a-g 872
|||||||||| |||| | ||| |||||||| ||||| ||| || || | |||| | | |
Sbjct 121 GCTGTCCAAGTTCTTCATACTCTGAGCTAACACAAGTGGAAAGAGAGGATGAAGCAGAAG 180
Query 873 --G-TTTCTTGTGGTACAAGAAACCAGAAAACAG 903
| ||||||||||||||||||||||||||||||
Sbjct 181 CAGGTTTCTTGTGGTACAAGAAACCAGAAAACAG 214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44718181641
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5