BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G69588.1

Length=884
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926257 jgi|Araly1|926257|scaffold_201818.1                        479    2e-134


> Ahg926257 jgi|Araly1|926257|scaffold_201818.1
Length=396

 Score =  479 bits (259),  Expect = 2e-134
 Identities = 369/418 (88%), Gaps = 23/418 (6%)
 Strand=Plus/Plus

Query  87   TCTTGTCTGCCTAAGAGCAGAAATGTTGGGTTCCAGTACAAGATCAATGTTTTTTCTTCT  146
            ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct  1    TCTTGTCTGCCTAAGAGCAGAAATGTTGGGTTCCAGTACAAGATCGATGCTTTTTCTTCT  60

Query  147  CGTCTGCATAGGATTACTAGCAGACAACAGATATAATGTCTCAGCCATGAGACATAGAGA  206
             ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  61   TGTCTGCATAGGATTACTAGCAGACAACAGATATAAGGTCTCAGCCATGAGACATAGAGA  120

Query  207  GTTTTTCCTCAAAGAAACACAAGCAGAAAAAGCAGGAGTTCAGACAGAGGAAATTTCTAA  266
            ||||||||||    ||||| || |      | |   ||  |   ||||||||||||||||
Sbjct  121  GTTTTTCCTC----AAACA-AA-C------A-C---AG--C---CAGAGGAAATTTCTAA  159

Query  267  GCTCAGGAGCATCGGTGTTCAATTCAAACACACCCTTGAAGATCAAGAAATGCTCAATAA  326
            | ||||||||| |||| |||||||||||||||||||||||||||||| ||||||||   |
Sbjct  160  GGTCAGGAGCACCGGTTTTCAATTCAAACACACCCTTGAAGATCAAGGAATGCTCAGGGA  219

Query  327  AAACCGACGCGTTCTCGAGGAAGTTAACAAAG-ATAAAATCAAAGCTGAGGAGACACAAG  385
            |||| | |||||||| ||||| |||||| ||| ||| | |||||||||||||||| ||||
Sbjct  220  AAACAGGCGCGTTCTGGAGGAGGTTAAC-AAGAATACAGTCAAAGCTGAGGAGACGCAAG  278

Query  386  AACGAAAGAATAAGACAGAAGACTCATTCAAATCAAGCAAGAGACGTGTAAGACGAGGAT  445
            ||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||
Sbjct  279  AACAAAAGAATAAGACAGATGACACATTCCAATCAAGCAAGAGACGTGTAAGACGAGGAT  338

Query  446  CAGATCCTATCCACAACAAAGCTCAGCCATTTTCTTAAACGGCGCAAGAGAAATCAAA  503
            |||||||||||||||||||||||||||||||||||||| |||| |||||| | |||||
Sbjct  339  CAGATCCTATCCACAACAAAGCTCAGCCATTTTCTTAAGCGGCACAAGAGCATTCAAA  396



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32747585703


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5