BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69600.1
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926258 jgi|Araly1|926258|scaffold_201819.1 1040 0.0
> Ahg926258 jgi|Araly1|926258|scaffold_201819.1
Length=763
Score = 1040 bits (563), Expect = 0.0
Identities = 637/671 (95%), Gaps = 12/671 (2%)
Strand=Plus/Plus
Query 71 CCGGAGAAATGGGTGTTTGTTACAAAGAGTGTTTGAAAAACCACGCGGCTAATCTCGGCG 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 CCGGAGAAATGGGTGTTTGTTACAAAGAGTGTTTGAAAAACCACGCGGCTAATCTCGGCG 132
Query 131 GCCATGCTCTCGACGGTTGCGGCGAGTTTATGCCGAGTCCCACGGCTACTTCCACCGATC 190
| |||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 133 GTCATGCTCTTGACGGTTGCGGCGAGTTTATGCCGAGTCCCACCGCTAGTTCCACCGATC 192
Query 191 CTTCTTCTCTCCGTTGCGCTGCTTGTGGCTGCCACCGTAACTTCCACCGCCGTGACCCTT 250
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 193 CTTCTTCTCTCCGTTGCGCCGCTTGTGGCTGCCACCGTAACTTCCACCGCCGTGACCCTT 252
Query 251 CCGAGAATCTCAACTTCCTCACCGCGCCTCCGATTTCTTCTCCCTCCGGCACTGAGTCGC 310
||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||
Sbjct 253 CCGAGAATCTCAACTTCTTCACCGCGCCGCCGATTTCTTCTCCTTCCGGCACTGAGTCGC 312
Query 311 CGCCGTCTCGTCACGTGTCTTCTCCTGTTCCTTGCTCTTACTACACCTCAGCTCCTCCAC 370
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 CGCCATCTCGTCACGTGTCTTCTCCTGTTCCTTGCTCTTACTACACCTCAGCTCCTCCAC 372
Query 371 ATCACGTGATTCTCTCTCTCAGCTCCGGTTTCCCTGGACCGTCAGATCAAGATCCAACGG 430
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 373 ATCACGTGATTCTCTCTCTTAGCTCCGGTTTTCCTGGACCGTCAGATCAAGATCCAACGG 432
Query 431 TGGTTAGGTCAGAGAACAGTTCAAGAGGAGCAATGAGGAAACGAACAAGAACCAAATTCA 490
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 433 TGGTTAGGTCAGAGAACAGCTCAAGAGGAGCAATGAGGAAACGAACCAGAACCAAATTCA 492
Query 491 CGCCGGAGCAGAAGATCAAGATGAGAGCCTTCGCAGAGAAAGCTGGTTGGAAAATCAACG 550
|||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 493 CGCCGGAGCAGAAGATCAAGATGAGAGCGTTCGCTGAGAAAGCAGGTTGGAAAATCAACG 552
Query 551 GATGTGATGAAAAGTCGGTGAGAGAGTTTTGTAACGAAGTTGGGATTGAGAGAGGAGTTC 610
| |||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||
Sbjct 553 GCTGTGATGAAAAGTCTGTGAGAAATTTTTGTAACGAAGTTGGGATTGAGAGAGGAGTTC 612
Query 611 TTAAAGTGTGGATGCATAACAACAAGTACTCACTTCTCAATGGCAAGATCAGAGAGATCG 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 TTAAAGTGTGGATGCATAACAACAAGTACTCACTTCTCAATGGCAAGATCAGAGAGATCG 672
Query 671 AACATGGCCTGTGTCTGAACACT----C--ACAGC---AA---TGATGGTGATGGGTCTT 718
||||||| ||||||||||||||| | ||||| || |||||||||||||||||
Sbjct 673 AACATGGTCTGTGTCTGAACACTATTACTCACAGCTGTAACAATGATGGTGATGGGTCTT 732
Query 719 CATCTTCTTGA 729
| |||||||||
Sbjct 733 CGTCTTCTTGA 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26838533568
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5