BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69610.1
Length=2051
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476096 jgi|Araly1|476096|fgenesh2_kg.2__1226__AT1G69610.1 2835 0.0
> Ahg476096 jgi|Araly1|476096|fgenesh2_kg.2__1226__AT1G69610.1
Length=1975
Score = 2835 bits (1535), Expect = 0.0
Identities = 1834/1973 (93%), Gaps = 42/1973 (2%)
Strand=Plus/Plus
Query 39 TACTAACTTCGATTTCTCCAATAAAGGTTTTGGTGTTGGTGGTTTGAAACAGTTTGTGTA 98
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 30 TACTAACTTCGATTTCTCCAATAAAGGTTTTGGTGTTGGTAGTTTGAAACAGTTTGTGTA 89
Query 99 CGGAAACACTTTCATTGTTCTCGATGCTTTCTGGGTTTCTTTCTCTAA-----TC-TCTT 152
||||||||||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 90 CGGAAACACTTTCATAGTTCTCGATGCTTTCTGGGTTTCTTTCTCTAATCTCTTCTTCTT 149
Query 153 CAGAGTTAATCCAGACAAAGAGACAAGCTTGGTCTTGTTCGAGAAACAGAACACAAAAGA 212
|||||||||| |||||||||||||||| |||||| |||||||||||||||||||||| |
Sbjct 150 CAGAGTTAATTCAGACAAAGAGACAAGTTTGGTCGTGTTCGAGAAACAGAACACAAACGG 209
Query 213 TTCCTCTGTTTTTGGAGATCATCAAGATCAAAACCAAATTTGTGGAACACAAGACGATGA 272
||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 210 TTCCTCTGTTTACGGAGATTATCAAGATCAAAAGCAAATTTGTGGAACACAAGACGATGA 269
Query 273 TCAGATGGAAAGCTCTCTGGTTTC-GATTAGCAAGAGATGCGAGTTTTATTCCGACAACA 331
|||||||||||| ||||||||||| || ||||||||||||||| ||||||| | | |||
Sbjct 270 TCAGATGGAAAGTTCTCTGGTTTCGGA-TAGCAAGAGATGCGAATTTTATT-C-A-GACA 325
Query 332 AAAGTATCGTTGGTTTTGTAGAAGAACCTAAAGCGTTTAGCTTTAAGTTTCATGAGTATT 391
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 326 AAAGTAGCGTTGGTTTTGTAGAAGAGCCTAAAGCGTTTAGCTTTAAGTTTCATGAGTACT 385
Query 392 CTGCTATTACTGTTCAGGAGGAGGAGAAGAAGAAGATGGTGAGTTTCTCTGATGAAAAAA 451
|||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| |
Sbjct 386 CTGCTAGTACTGTTCAGGAGGAGGAGAAGAAGAAGATGGGGAATTTCTCTGATGAAAACA 445
Query 452 CGAGTTCCATGGTTTTGGAGAAATCAGAATCAGATGGTTTTATGAAGGAACACGTGAAAG 511
|||||||||||||||||||| ||||||||||||| | | |||||||||||||||
Sbjct 446 CGAGTTCCATGGTTTTGGAGGAATCAGAATCAGA--G------G-AGGAACACGTGAAAG 496
Query 512 AAGAGATGTTGGTTTATGAGTTCATGAGTTGTGGTGTTTTAAAAGAGTCATTGGTTCACG 571
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||
Sbjct 497 AAGAGATGTTGGTTTATGAGTTCATGAGTTGTGGTGTTTTGAAAGAATCATTAGTCCACG 556
Query 572 AGAATCTTGTTGGTGGTGAAGACAACTTGTTTGATGATGATGATGGGTTTATAGAACTAA 631
||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 557 AGAATTTTGTTGGTGGTCAAGAAAACTTGTTTGATGATGATGATGGGTTTATAGAACTAA 616
Query 632 ACCCAAGTTTACAGATTTCAAACTTTGCTTATGgagaagaagaagaagaagagtttatac 691
||||||||||||||||||| |||||||||||| | | ||||||||||||||| |
Sbjct 617 ACCCAAGTTTACAGATTTCTAACTTTGCTTAT------G--G-AGAAGAAGAGTTTATGC 667
Query 692 acagagaagaagagatgaaaatgggctttgatgaacaagaagaGGTATatgatgagtttg 751
| | ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 668 AGAAAGAAGAAGAGAGGAAAATGGGTTTTGATGAACAAGAAGAGGTATATGATGAGTTTG 727
Query 752 atgatggttcagattcagatgatgatgagtttgagcatagtgatgtgattgagAAGTTGA 811
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 728 ACGATGGTTCAGATTCAGACGATGATGAGTTTGAGCATAGTGATGTGATTGAGAAATTGA 787
Query 812 AAACAGAATTAAGGACTGCAAGGACAGGAGGATTGTGCACTATTCTTGAGGAATCAGAGA 871
|||||||| ||||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 788 AAACAGAACTAAGGGCCGCAAGAACAGGAGGATTGTGCACTATTCTTGAGGAATCAGAGA 847
Query 872 CTCCATTACAAGAGCTGAAACCACTCAAGATTGAACCAAAACCAGATCAACACAAAGACA 931
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 848 CTCCATTACAAGAGCTGAAACCACTCAAGATCGAACCAAAACCAGATCAACACAAAGACA 907
Query 932 GAATTGCTGAAATTCACAAGGTTTACAAGAACTACGCGGTTAAAATGCGAAAACTCGATG 991
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 908 GAATTGCTGAAATTCACAAGGTTTACAAGAACTATGTGGTTAAAATGCGAAAACTCGATG 967
Query 992 TCATCGATTCTCAAACAATGCATTCCATCAGTTTGCTAAAGCTAAAAGATTCATCTAAAC 1051
|||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||
Sbjct 968 TCATCGATTCTCAAACAATGCATTCCATCAGTTTGCTAAAGCTAAAGGAATCATCTGAAC 1027
Query 1052 CTAGTAGAAACACTGATAAACCGCCTAAATCGTCTCTGCATCAGAATATATGGCCATTCA 1111
| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 CGAGCAGAAACACCGATAAACCGCCTAAATCGTCTCTGCATCAGAATATATGGCCATTCA 1087
Query 1112 AGAAACATACGCTTGAATGTGACCCGAGTGAGAGACTTGTGAAAGAAGCAAGCAGAGACT 1171
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1088 AGAAACATAAGCTTGAATGTGACCCGATTGAGAGACTTGTGAAAGAAGCAAGCAGAGACT 1147
Query 1172 TTGAGACTGTCTATGTAGGCCAAGTTTGTCTCTCGTGGGAGATGCTTCGATGGCAATACG 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 TTGAGACTGTCTATGTAGGCCAAGTTTGTCTCTCGTGGGAGATGCTTCGATGGCAATACG 1207
Query 1232 AC-AAAGTCTTGGAATTTGATTCACAGGTTACTACTTATCAATACAACTTAGTAGCTGGA 1290
| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 1208 -CTAAAGTCTTGGAATTTGATTCTCAGGTTACTACTTATCAATACAATTTAGTTGCTGGA 1266
Query 1291 GAGTTTCAGTTATTCCAAGTTCTGCTTCAACGGTTTGTGGAGAATGAACCGTTTCAGAAC 1350
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1267 GAGTTTCAGTTATTCCAAGTTCTGCTTCAACGGTTTGTGGAGAATGAACCGTTTCAAAAC 1326
Query 1351 TCCTCTAGAGTTGAGACTTACTTAAAGAACCGTCGCCATTTCCAGAATTTCCTTCAGATT 1410
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1327 TCCTCTAGAGTTGAGACTTACTTAAAGAACCGTCGCCATTTCCATAATTTTCTTCAGATT 1386
Query 1411 CCACTTGTTAGAGATGACCGTTCTTCGAAGA--A----GAAATGTAGATATGAAGGAGAA 1464
||||||||||||||||| ||||| || |||| | |||||||||| | ||||| |||
Sbjct 1387 CCACTTGTTAGAGATGATCGTTCCTCAAAGACTAACAAGAAATGTAGAAACGAAGGGGAA 1446
Query 1465 TTCGCGGTAAAGACTGAAATGTTGAGAGAGATTATCCGAGAGTCGATGAGTGTTTTCTGG 1524
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1447 TTCGCGGTAAAGATTGAAATGTTGAGAGAGATTATCCGAGAATCGATGAGTGTTTTTTGG 1506
Query 1525 GAGTTTCTTTGTGCAGACAAAGACGAGTTTACTTCAATGATGAAAGTTTCTCACCAAACT 1584
||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 1507 GAGTTTCTTTGTGCAGACAAAGATGAGTTTACTTCAATAATAAAAGTTTCTCACCAAACT 1566
Query 1585 CAAGTCTCTCCACAGGATTCTTTAGACCTTGAGCTCTTGACAGATATCAGAACTCATCTC 1644
|||||||||||||| ||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 1567 CAAGTCTCTCCACAAGATCCTCTAGACCTTGAGCTCTTGACAGATATCAGAACTGATCTC 1626
Query 1645 CAAAAGAAAGAGAAGAAGCTAAAGGAAATACAAAGAAGCCAAAGCTGTATAGTGAAGAAG 1704
|||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1627 CAAAAGAAGGATAAGAAGCTAAAGGAAATACTAAGAAGCCAAAGCTGTATAGTGAAGAAG 1686
Query 1705 TTAAAGAAGAATGAATCAAAGAGTAGTATTGGTGTGAAGGATGAATTACTAATAGCTAAA 1764
||||||||||||| |||||||||| | |||||||||||||||| ||||| |||||| ||
Sbjct 1687 ATAAAGAAGAATGAGTCAAAGAGTAATGTTGGTGTGAAGGATGAGTTACTGATAGCTCAA 1746
Query 1765 ATTGAACTGAGACTGGTTTCAAGAGTGATGTACATGTCGAAACTTACTACTGAGAAGTTA 1824
|||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||
Sbjct 1747 ATTGAACTGAGACTGGTTTCAAGAGTGATGAACATGTCGAAACTTACCACCGAGAAGTTA 1806
Query 1825 CATTGGTGTCAGG-AGAAACTTGAAAAGATCAGCTTCAACGGTCGGAAGATTCATATGGA 1883
||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1807 GTTTGGTGT-AGGGAGAAACTTGAAAAGATCAGCTTCAACGGTCGGAAGATTCACATGGA 1865
Query 1884 ACCATATTTCTCGTTGTTACCTTGTTGAGCCATCTCTGCGTATAGATTAGATCATAGATG 1943
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1866 ACCATCTTTCTCGTTGTTACCTTGTTGAGCCATCTCTGCCTATAGATTAGATCATAGATA 1925
Query 1944 TTGGAACAATATGGCTTCATCAGATCCAGGAAGATGTCTTTTTGTTGTTGTTC 1996
|||||| | |||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1926 TTGGAATATTATGGCTTCA---GATCCGGGAAGATGTCTTTTTGTTGTTGTTC 1975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77132746125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5