BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G69620.1 Length=666 Score E Sequences producing significant alignments: (Bits) Value Ahg926260 jgi|Araly1|926260|scaffold_201821.1 804 0.0 Ahg484659 jgi|Araly1|484659|fgenesh2_kg.5__651__AT3G28900.1 279 1e-74 > Ahg926260 jgi|Araly1|926260|scaffold_201821.1 Length=498 Score = 804 bits (435), Expect = 0.0 Identities = 479/500 (96%), Gaps = 3/500 (1%) Strand=Plus/Plus Query 42 GAGTGAGACAGAGAGAAGCGAAAATGGTGCAGCGCCTTGTTTACCGATCACGACACAGTT 101 |||||||| | ||||||||||||||||||||||| ||||||||||||||||| ||||| | Sbjct 1 GAGTGAGAGATAGAGAAGCGAAAATGGTGCAGCGTCTTGTTTACCGATCACGTCACAGCT 60 Query 102 ACGCCACCAAATCCAACCAGCACAGGATCGTCAAAACTCCAGGAGGTAAATTGACGTACC 161 ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 61 ACGCCACCAAATCAAACCAGCACCGGATCGTCAAAACTCCAGGAGGTAAATTGACGTATC 120 Query 162 AGACCACTAAGAAGAGAGCTAGTGGACCTAAATGTCCCGTTACCGGCAAGCGTATTCAGG 221 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AGACCACTAAGAAGAGAGCTAGTGGACCTAAATGTCCCGTTACCGGCAAGCGTATTCAGG 180 Query 222 GTATTCCTCACTTGAGGCCAACTGAGTACAAGAGGTCACGTTTATCAAGAAACAGGAGGA 281 |||||||||||||||||||| ||||||||||||| || ||||||||||||||||| |||| Sbjct 181 GTATTCCTCACTTGAGGCCATCTGAGTACAAGAGATCGCGTTTATCAAGAAACAGAAGGA 240 Query 282 CCGTGAACCGTGCTTATGGTGGGGTTTTGTCTGGTTCTGCTGTTAGGGAAAGAATCATTC 341 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CTGTGAACCGTGCTTATGGTGGGGTTTTGTCTGGTTCTGCTGTTAGGGAAAGAATCATTC 300 Query 342 GTGCCTTCCTTGTGGAGGAGCAAAAGATTGTGAAGAAGGTTTTGAAGCTTCAGAAGGCAA 401 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 301 GTGCTTTCCTTGTGGAGGAGCAAAAGATTGTGAAGAAGGTTTTGAAGCTTCAAAAGGCAA 360 Query 402 AGGAAAAGGTTGCTCCCAAGTGATCTAGACCCTATTAGTTTTTATGTTTTATGGCTCTGT 461 |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 361 AGGAAAAGGTTGCTCCCAAGAG--CTAGACCCTATTAGTTTTTATGTTTTATGGCTCTGT 418 Query 462 TCTAGCGATAGTACTGGTTGCAGAGAAAAA-CATTGTGTACTCATCAAAAAATTTAAGCT 520 |||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 419 TCTAGCGATAGTTCTGGTTGCAGAGAAAAAACATTGTGTACTCGTCAAAAAATTTAAGCT 478 Query 521 TTTTTGTATTGGTTTTGGAT 540 |||||||||||||||||||| Sbjct 479 TTTTTGTATTGGTTTTGGAT 498 > Ahg484659 jgi|Araly1|484659|fgenesh2_kg.5__651__AT3G28900.1 Length=531 Score = 279 bits (151), Expect = 1e-74 Identities = 301/371 (81%), Gaps = 20/371 (5%) Strand=Plus/Plus Query 50 CAGAGAGAAGCGAAAATGGTGCAGCGCCTTGTTTACCGATCACGACACAGTTACGCCACC 109 ||||| ||||||||||||| || || ||||||||||||||||| ||| |||||||||| Sbjct 29 CAGAGCTAAGCGAAAATGGTTCAACGTCTTGTTTACCGATCACGTCACTCTTACGCCACC 88 Query 110 AAATCCAACCAGCACAGGATCGTCAAAACTCCAGGAGGTAAATTGACGTACCAGACCACT 169 || |||||||| ||| | |||||||||||||| || || |||||||| |||||||| || Sbjct 89 AAGTCCAACCAACACCGCATCGTCAAAACTCCTGGTGGGAAATTGACTTACCAGACGACG 148 Query 170 AAGAAGAGAGCTAGTGGACCTAAATGTCCC-GTTACCGGCAAGCGTATTCA-GGGTATTC 227 || |||||||||||||||||||| || ||| ||||| |||||| | || || ||| |||| Sbjct 149 AACAAGAGAGCTAGTGGACCTAAGTG-CCCTGTTACTGGCAAGAGAATCCAAGGG-ATTC 206 Query 228 CTCACTTGAGGCCAACTGAGTACAAGAGGTC-ACGTTTATCAAGAAAC-AGGAGGACCGT 285 | || ||||| || |||||||||| ||||| | ||| |||| || || ||||| || Sbjct 207 CGCATTTGAGACCTGCTGAGTACAAAAGGTCGAGGTTGG-CAAGGAATGAG-AGGACAGT 264 Query 286 GAACCGTGCTTATGGTGGGGTTTTGTCTGGT-TCTGCTGTTAGGGAAAG--AA-TCATT- 340 ||| ||||| |||||||| ||| | ||||| | |||||||||||| || || | ||| Sbjct 265 GAATCGTGCATATGGTGGTGTTCTATCTGGAGT-TGCTGTTAGGGAGAGGCAAGTGATTG 323 Query 341 -C-GTGCCTTCCTTG-TGGAGGAGCAAAAGATTGTGAAGAAGGTTTTGAAGCTTCAGAAG 397 | | |||||| ||| | || || || ||||||||||||||||||||||||||||| ||| Sbjct 324 TCAGGGCCTTC-TTGGTTGAAGAACAGAAGATTGTGAAGAAGGTTTTGAAGCTTCAAAAG 382 Query 398 GC-AAAG-GAA 406 || |||| ||| Sbjct 383 GCGAAAGAGAA 393 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24436789797 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5