BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69620.1
Length=666
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926260 jgi|Araly1|926260|scaffold_201821.1 804 0.0
Ahg484659 jgi|Araly1|484659|fgenesh2_kg.5__651__AT3G28900.1 279 1e-74
> Ahg926260 jgi|Araly1|926260|scaffold_201821.1
Length=498
Score = 804 bits (435), Expect = 0.0
Identities = 479/500 (96%), Gaps = 3/500 (1%)
Strand=Plus/Plus
Query 42 GAGTGAGACAGAGAGAAGCGAAAATGGTGCAGCGCCTTGTTTACCGATCACGACACAGTT 101
|||||||| | ||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 1 GAGTGAGAGATAGAGAAGCGAAAATGGTGCAGCGTCTTGTTTACCGATCACGTCACAGCT 60
Query 102 ACGCCACCAAATCCAACCAGCACAGGATCGTCAAAACTCCAGGAGGTAAATTGACGTACC 161
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 61 ACGCCACCAAATCAAACCAGCACCGGATCGTCAAAACTCCAGGAGGTAAATTGACGTATC 120
Query 162 AGACCACTAAGAAGAGAGCTAGTGGACCTAAATGTCCCGTTACCGGCAAGCGTATTCAGG 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGACCACTAAGAAGAGAGCTAGTGGACCTAAATGTCCCGTTACCGGCAAGCGTATTCAGG 180
Query 222 GTATTCCTCACTTGAGGCCAACTGAGTACAAGAGGTCACGTTTATCAAGAAACAGGAGGA 281
|||||||||||||||||||| ||||||||||||| || ||||||||||||||||| ||||
Sbjct 181 GTATTCCTCACTTGAGGCCATCTGAGTACAAGAGATCGCGTTTATCAAGAAACAGAAGGA 240
Query 282 CCGTGAACCGTGCTTATGGTGGGGTTTTGTCTGGTTCTGCTGTTAGGGAAAGAATCATTC 341
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTGTGAACCGTGCTTATGGTGGGGTTTTGTCTGGTTCTGCTGTTAGGGAAAGAATCATTC 300
Query 342 GTGCCTTCCTTGTGGAGGAGCAAAAGATTGTGAAGAAGGTTTTGAAGCTTCAGAAGGCAA 401
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 GTGCTTTCCTTGTGGAGGAGCAAAAGATTGTGAAGAAGGTTTTGAAGCTTCAAAAGGCAA 360
Query 402 AGGAAAAGGTTGCTCCCAAGTGATCTAGACCCTATTAGTTTTTATGTTTTATGGCTCTGT 461
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 361 AGGAAAAGGTTGCTCCCAAGAG--CTAGACCCTATTAGTTTTTATGTTTTATGGCTCTGT 418
Query 462 TCTAGCGATAGTACTGGTTGCAGAGAAAAA-CATTGTGTACTCATCAAAAAATTTAAGCT 520
|||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 419 TCTAGCGATAGTTCTGGTTGCAGAGAAAAAACATTGTGTACTCGTCAAAAAATTTAAGCT 478
Query 521 TTTTTGTATTGGTTTTGGAT 540
||||||||||||||||||||
Sbjct 479 TTTTTGTATTGGTTTTGGAT 498
> Ahg484659 jgi|Araly1|484659|fgenesh2_kg.5__651__AT3G28900.1
Length=531
Score = 279 bits (151), Expect = 1e-74
Identities = 301/371 (81%), Gaps = 20/371 (5%)
Strand=Plus/Plus
Query 50 CAGAGAGAAGCGAAAATGGTGCAGCGCCTTGTTTACCGATCACGACACAGTTACGCCACC 109
||||| ||||||||||||| || || ||||||||||||||||| ||| ||||||||||
Sbjct 29 CAGAGCTAAGCGAAAATGGTTCAACGTCTTGTTTACCGATCACGTCACTCTTACGCCACC 88
Query 110 AAATCCAACCAGCACAGGATCGTCAAAACTCCAGGAGGTAAATTGACGTACCAGACCACT 169
|| |||||||| ||| | |||||||||||||| || || |||||||| |||||||| ||
Sbjct 89 AAGTCCAACCAACACCGCATCGTCAAAACTCCTGGTGGGAAATTGACTTACCAGACGACG 148
Query 170 AAGAAGAGAGCTAGTGGACCTAAATGTCCC-GTTACCGGCAAGCGTATTCA-GGGTATTC 227
|| |||||||||||||||||||| || ||| ||||| |||||| | || || ||| ||||
Sbjct 149 AACAAGAGAGCTAGTGGACCTAAGTG-CCCTGTTACTGGCAAGAGAATCCAAGGG-ATTC 206
Query 228 CTCACTTGAGGCCAACTGAGTACAAGAGGTC-ACGTTTATCAAGAAAC-AGGAGGACCGT 285
| || ||||| || |||||||||| ||||| | ||| |||| || || ||||| ||
Sbjct 207 CGCATTTGAGACCTGCTGAGTACAAAAGGTCGAGGTTGG-CAAGGAATGAG-AGGACAGT 264
Query 286 GAACCGTGCTTATGGTGGGGTTTTGTCTGGT-TCTGCTGTTAGGGAAAG--AA-TCATT- 340
||| ||||| |||||||| ||| | ||||| | |||||||||||| || || | |||
Sbjct 265 GAATCGTGCATATGGTGGTGTTCTATCTGGAGT-TGCTGTTAGGGAGAGGCAAGTGATTG 323
Query 341 -C-GTGCCTTCCTTG-TGGAGGAGCAAAAGATTGTGAAGAAGGTTTTGAAGCTTCAGAAG 397
| | |||||| ||| | || || || ||||||||||||||||||||||||||||| |||
Sbjct 324 TCAGGGCCTTC-TTGGTTGAAGAACAGAAGATTGTGAAGAAGGTTTTGAAGCTTCAAAAG 382
Query 398 GC-AAAG-GAA 406
|| |||| |||
Sbjct 383 GCGAAAGAGAA 393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24436789797
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5