BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G69630.1 Length=1356 Score E Sequences producing significant alignments: (Bits) Value Ahg476098 jgi|Araly1|476098|fgenesh2_kg.2__1228__AT1G69630.1 1317 0.0 Ahg477036 jgi|Araly1|477036|fgenesh2_kg.2__2166__AT1G78730.1 171 2e-41 > Ahg476098 jgi|Araly1|476098|fgenesh2_kg.2__1228__AT1G69630.1 Length=1287 Score = 1317 bits (713), Expect = 0.0 Identities = 864/937 (92%), Gaps = 9/937 (1%) Strand=Plus/Plus Query 1 ATGGATGAAGATAGAGAGAAACATGTTCGTGCGAAAGGATCTGATGAAGTTGATTGGATA 60 |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGATGAAGATGGAGATAAACATGTTCGTGCGAAAGGATCTGATGAAGTTGATTGGATA 60 Query 61 AGCAAATTACCAGATTGTTTGCTATGTGAGGTACTCTTGAATCTTCCCACAAAAGATGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AGCAAATTACCAGATTGTTTGCTATGTGAGGTACTCTTGAATCTTCCCACAAAAGATGTT 120 Query 121 GTTAAGACTAGTGTTTTATCC-CGTAGATGGAGAAATCTCTGGAAACACGTACCTGGTTT 179 ||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 121 GTTAAGAGTAGTGTTTTATCCAC-TAGATGGAGAAATCTCTGGAAACACGTACCTGGTTT 179 Query 180 AGACCTAGACAATACTGATTTCCAAGAGTTCAACACATTCTTGAGTTTTGTTGATAGCTT 239 |||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 180 AGACTTAGACAATTCTGATTTCCAAGAGTTCAACACATTCTTGAATTTTGTTGATAGCTT 239 Query 240 TCTCGATTTCAACAGTGAATCATTCTTACAAAAATTTATCTTGAAGTATGATTGTGATGA 299 ||| |||||||||| |||||||| ||||||| | ||||| |||||||||||||||||||| Sbjct 240 TCTTGATTTCAACACTGAATCATGCTTACAATACTTTATGTTGAAGTATGATTGTGATGA 299 Query 300 CGA-G-T-ATGACCCTGACATTTTTCTTATCGGACGTTGGATCAACACTATCGTCACGCG 356 || | | |||| ||||| |||| | ||||||||||||||||||||||||| |||||||| Sbjct 300 TGATGATTATGATCCTGAGATTTCTATTATCGGACGTTGGATCAACACTATTGTCACGCG 359 Query 357 TAAAGTTCAACATATCGATGTTTTGGATGATTCGTATGGGAGTTGGGAGGTTCAGTTACC 416 || ||| ||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 360 CAATGTTAAACATATCGATGTTTTGGATGATTCATATGGGAGTTGGGAGGTTCAGTTGCC 419 Query 417 TTCAAGCATTTACACTTGTGAGAGTTTGGTATCTTTAAAGCTTTGTGGATTAACTTTGGC 476 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 420 TTCAAGCATTTACACTTGTGAGAGTTTGGTATCTTTAAAGCTTTGTGCATTAACTTTACC 479 Query 477 TAGTCCCGAGTTTGTTTCTTTACCTTCACTCAAAGTTATGGATCTGATTATAACTAAGTT 536 ||||||| ||||||||||||||||||| || |||||||||| |||| ||||| ||||||| Sbjct 480 TAGTCCCAAGTTTGTTTCTTTACCTTCTCTTAAAGTTATGGCTCTGCTTATAGCTAAGTT 539 Query 537 TGCTGACGATATGGGGTTAGAAACGCTGATTACGAAATGCCCGGTTCTTGAAAGCTTGAC 596 |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TGCTGACGATTTGGCGTTAGAAACGCTGATTACGAAATGCCCGGTTCTTGAAAGCTTGAC 599 Query 597 TATTGAGAGGTCTTTTTGTGATGAGATTGAAGTTTTACGTGTGCGGTCTCAGTCTCTGTT 656 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 600 TATTGAGAGGTGTTTTTGTGATGAGATTGAAGTTTTACGTGTGCGGTCTCAGTCTTTGTT 659 Query 657 GAGGTTCACTCATGTTGCGGATAGTGATGAGGGTGTGGTTGAAGATCTTGTTGTTTCAAT 716 ||| || |||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 660 GAGCTTTACTCATGTTGCGGATAGTGATGAGGGTGTGGTTGAAGATCTTGTGGTTGAAAT 719 Query 717 TGATGCTCCCAAGCTTGAGTATTTGAGGCTAAGTGATCATCGAGTTGCAAGTTTTATACT 776 ||||||||| |||||||||||| ||||||| |||||| || ||||||| ||||| ||||| Sbjct 720 TGATGCTCCTAAGCTTGAGTATCTGAGGCTTAGTGATTATAGAGTTGCGAGTTTCATACT 779 Query 777 TAATAAACCCGGTAAGCTTGTCAAAGCGGATATCGATATTGTGTTTAACTTGAGTTCCGT 836 |||||||| || |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 780 AAATAAACCGGGCAAGCTTGTTGAAGCGGATATCGATATTGTGTTTAACTTGTCTTCCG- 838 Query 837 GAA-TAAGTTTAATCCAGATGATCTACCAAAGAGAACTATGATACGTAATTTTCTCCTCG 895 ||| |||||| |||||||||||||||||||| ||||||||||| |||||||||||| ||| Sbjct 839 GAAATAAGTTCAATCCAGATGATCTACCAAAAAGAACTATGATTCGTAATTTTCTCGTCG 898 Query 896 -GCATCTCTACTATTAAAGATATGATCATTTTTTCGA 931 | || |||||| | |||||| ||||||||| ||||| Sbjct 899 CG-ATTTCTACTGTCAAAGATTTGATCATTTCTTCGA 934 Score = 448 bits (242), Expect = 7e-125 Identities = 288/310 (93%), Gaps = 3/310 (1%) Strand=Plus/Plus Query 1049 TTGAG-AGCTGCCCGAATCTAAAAACTCTTGTCGTGAAATCTGCTAGTTATCAGGAGAAG 1107 ||||| |||||||||||||||||||||||||||||||||||| ||| ||||| |||||| Sbjct 979 TTGAGAAGCTGCCCGAATCTAAAAACTCTTGTCGTGAAATCTACTAAATATCAAGAGAAG 1038 Query 1108 GGAGAAAATATTATTTTGC-CGGGACCTAGGCGTTTCCTATCATCTCTCGAGTATGTTAA 1166 || | ||||| |||| | | |||||| |||||||||||||||| |||||||||||||| Sbjct 1039 CAAGGAGATATTGTTTT-CTCCGGACCTCGGCGTTTCCTATCATCGCTCGAGTATGTTAA 1097 Query 1167 GATAGAAAGGCCATTGAAAGGAGAGGCGATGGAGATGAAACTAGTGAGTTACTTACTTGA 1226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1098 GATAGAAAGGCCATTGAAAGGAGAGGCGATGGAGATGAAACTAGTGAGTTACTTACTTGA 1157 Query 1227 GAATTCAACCATCCTCAAGAAACTGACCCTATGCTTGGATGATTCCGTGAAGAAAGAAGA 1286 ||||||||| ||||||||| |||||||||||||||||||||||||| | ||||||||||| Sbjct 1158 GAATTCAACAATCCTCAAGGAACTGACCCTATGCTTGGATGATTCCATAAAGAAAGAAGA 1217 Query 1287 TTCTGTCATCCTAAAAGAACTCCTTGCCATTCCAAGACTCTCTACATCATCCAAAGTTGT 1346 |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 1218 ATCTGTCATCCTAAAAGAACTCCTTACCATTCCAAGACTCTCTACATCATGCAAAGTTGT 1277 Query 1347 CGTTCTCTGA 1356 |||||||||| Sbjct 1278 CGTTCTCTGA 1287 Score = 87.9 bits (47), Expect = 2e-16 Identities = 56/60 (93%), Gaps = 2/60 (3%) Strand=Plus/Plus Query 953 ATTTC-TCAAGATGTGAACGACTACCCTTATTCCGTAACCTATCTGTCTTGTGTGTTGAG 1011 ||||| || | |||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 925 ATTTCTTCGA-ATGTGAACGACTACCCTTATTCCGTAACTTATCTGTCTTGTGTGTTGAG 983 > Ahg477036 jgi|Araly1|477036|fgenesh2_kg.2__2166__AT1G78730.1 Length=1235 Score = 171 bits (92), Expect = 2e-41 Identities = 179/220 (81%), Gaps = 9/220 (4%) Strand=Plus/Plus Query 61 AGCAAATTACCAGATTGTTTGCTATGTGAGGTACTCTTGAATCTTCCCACAAAAGATGTT 120 ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 85 AGCAAATTACCAGATCCATTGCTATGTCAGGTACTCTTGAATCTTCCCACAAAAGATGTG 144 Query 121 GTTAAGACTAGTGTTTTATCCCGTAGATGGAGAAA-TCTCTGGA-AACACGTACCTGGTT 178 |||||||||||||| |||||| |||||||| |||| | |||||| || |||||||||| Sbjct 145 GTTAAGACTAGTGTGTTATCCAGTAGATGG-GAAAATATCTGGAGAAGT-GTACCTGGTT 202 Query 179 TAGACCTAGACAATACTGATTTCCAAGAGTTCAACACATTCT-TGAGTTTTGTTGATAGC 237 | ||| | | || ||| |||| |||| |||| | || | |||| |||||||||||| Sbjct 203 TGGACTTGGGGTATGGTGACTTCCCGGAGTACAACGCTTT-TGTGAGCTTTGTTGATAGC 261 Query 238 TTTCTCGATTTCAACAGTGAATCATT-CTTACAAAAATTT 276 ||||| | ||| ||| | ||||| || | | ||||| ||| Sbjct 262 TTTCTGGGTTTTAACCGCGAATC-TTGCCTGCAAAA-TTT 299 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50741602527 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5