BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69630.1
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476098 jgi|Araly1|476098|fgenesh2_kg.2__1228__AT1G69630.1 1317 0.0
Ahg477036 jgi|Araly1|477036|fgenesh2_kg.2__2166__AT1G78730.1 171 2e-41
> Ahg476098 jgi|Araly1|476098|fgenesh2_kg.2__1228__AT1G69630.1
Length=1287
Score = 1317 bits (713), Expect = 0.0
Identities = 864/937 (92%), Gaps = 9/937 (1%)
Strand=Plus/Plus
Query 1 ATGGATGAAGATAGAGAGAAACATGTTCGTGCGAAAGGATCTGATGAAGTTGATTGGATA 60
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATGAAGATGGAGATAAACATGTTCGTGCGAAAGGATCTGATGAAGTTGATTGGATA 60
Query 61 AGCAAATTACCAGATTGTTTGCTATGTGAGGTACTCTTGAATCTTCCCACAAAAGATGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCAAATTACCAGATTGTTTGCTATGTGAGGTACTCTTGAATCTTCCCACAAAAGATGTT 120
Query 121 GTTAAGACTAGTGTTTTATCC-CGTAGATGGAGAAATCTCTGGAAACACGTACCTGGTTT 179
||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTAAGAGTAGTGTTTTATCCAC-TAGATGGAGAAATCTCTGGAAACACGTACCTGGTTT 179
Query 180 AGACCTAGACAATACTGATTTCCAAGAGTTCAACACATTCTTGAGTTTTGTTGATAGCTT 239
|||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 180 AGACTTAGACAATTCTGATTTCCAAGAGTTCAACACATTCTTGAATTTTGTTGATAGCTT 239
Query 240 TCTCGATTTCAACAGTGAATCATTCTTACAAAAATTTATCTTGAAGTATGATTGTGATGA 299
||| |||||||||| |||||||| ||||||| | ||||| ||||||||||||||||||||
Sbjct 240 TCTTGATTTCAACACTGAATCATGCTTACAATACTTTATGTTGAAGTATGATTGTGATGA 299
Query 300 CGA-G-T-ATGACCCTGACATTTTTCTTATCGGACGTTGGATCAACACTATCGTCACGCG 356
|| | | |||| ||||| |||| | ||||||||||||||||||||||||| ||||||||
Sbjct 300 TGATGATTATGATCCTGAGATTTCTATTATCGGACGTTGGATCAACACTATTGTCACGCG 359
Query 357 TAAAGTTCAACATATCGATGTTTTGGATGATTCGTATGGGAGTTGGGAGGTTCAGTTACC 416
|| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 360 CAATGTTAAACATATCGATGTTTTGGATGATTCATATGGGAGTTGGGAGGTTCAGTTGCC 419
Query 417 TTCAAGCATTTACACTTGTGAGAGTTTGGTATCTTTAAAGCTTTGTGGATTAACTTTGGC 476
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 420 TTCAAGCATTTACACTTGTGAGAGTTTGGTATCTTTAAAGCTTTGTGCATTAACTTTACC 479
Query 477 TAGTCCCGAGTTTGTTTCTTTACCTTCACTCAAAGTTATGGATCTGATTATAACTAAGTT 536
||||||| ||||||||||||||||||| || |||||||||| |||| ||||| |||||||
Sbjct 480 TAGTCCCAAGTTTGTTTCTTTACCTTCTCTTAAAGTTATGGCTCTGCTTATAGCTAAGTT 539
Query 537 TGCTGACGATATGGGGTTAGAAACGCTGATTACGAAATGCCCGGTTCTTGAAAGCTTGAC 596
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGCTGACGATTTGGCGTTAGAAACGCTGATTACGAAATGCCCGGTTCTTGAAAGCTTGAC 599
Query 597 TATTGAGAGGTCTTTTTGTGATGAGATTGAAGTTTTACGTGTGCGGTCTCAGTCTCTGTT 656
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 600 TATTGAGAGGTGTTTTTGTGATGAGATTGAAGTTTTACGTGTGCGGTCTCAGTCTTTGTT 659
Query 657 GAGGTTCACTCATGTTGCGGATAGTGATGAGGGTGTGGTTGAAGATCTTGTTGTTTCAAT 716
||| || |||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 660 GAGCTTTACTCATGTTGCGGATAGTGATGAGGGTGTGGTTGAAGATCTTGTGGTTGAAAT 719
Query 717 TGATGCTCCCAAGCTTGAGTATTTGAGGCTAAGTGATCATCGAGTTGCAAGTTTTATACT 776
||||||||| |||||||||||| ||||||| |||||| || ||||||| ||||| |||||
Sbjct 720 TGATGCTCCTAAGCTTGAGTATCTGAGGCTTAGTGATTATAGAGTTGCGAGTTTCATACT 779
Query 777 TAATAAACCCGGTAAGCTTGTCAAAGCGGATATCGATATTGTGTTTAACTTGAGTTCCGT 836
|||||||| || |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 780 AAATAAACCGGGCAAGCTTGTTGAAGCGGATATCGATATTGTGTTTAACTTGTCTTCCG- 838
Query 837 GAA-TAAGTTTAATCCAGATGATCTACCAAAGAGAACTATGATACGTAATTTTCTCCTCG 895
||| |||||| |||||||||||||||||||| ||||||||||| |||||||||||| |||
Sbjct 839 GAAATAAGTTCAATCCAGATGATCTACCAAAAAGAACTATGATTCGTAATTTTCTCGTCG 898
Query 896 -GCATCTCTACTATTAAAGATATGATCATTTTTTCGA 931
| || |||||| | |||||| ||||||||| |||||
Sbjct 899 CG-ATTTCTACTGTCAAAGATTTGATCATTTCTTCGA 934
Score = 448 bits (242), Expect = 7e-125
Identities = 288/310 (93%), Gaps = 3/310 (1%)
Strand=Plus/Plus
Query 1049 TTGAG-AGCTGCCCGAATCTAAAAACTCTTGTCGTGAAATCTGCTAGTTATCAGGAGAAG 1107
||||| |||||||||||||||||||||||||||||||||||| ||| ||||| ||||||
Sbjct 979 TTGAGAAGCTGCCCGAATCTAAAAACTCTTGTCGTGAAATCTACTAAATATCAAGAGAAG 1038
Query 1108 GGAGAAAATATTATTTTGC-CGGGACCTAGGCGTTTCCTATCATCTCTCGAGTATGTTAA 1166
|| | ||||| |||| | | |||||| |||||||||||||||| ||||||||||||||
Sbjct 1039 CAAGGAGATATTGTTTT-CTCCGGACCTCGGCGTTTCCTATCATCGCTCGAGTATGTTAA 1097
Query 1167 GATAGAAAGGCCATTGAAAGGAGAGGCGATGGAGATGAAACTAGTGAGTTACTTACTTGA 1226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 GATAGAAAGGCCATTGAAAGGAGAGGCGATGGAGATGAAACTAGTGAGTTACTTACTTGA 1157
Query 1227 GAATTCAACCATCCTCAAGAAACTGACCCTATGCTTGGATGATTCCGTGAAGAAAGAAGA 1286
||||||||| ||||||||| |||||||||||||||||||||||||| | |||||||||||
Sbjct 1158 GAATTCAACAATCCTCAAGGAACTGACCCTATGCTTGGATGATTCCATAAAGAAAGAAGA 1217
Query 1287 TTCTGTCATCCTAAAAGAACTCCTTGCCATTCCAAGACTCTCTACATCATCCAAAGTTGT 1346
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1218 ATCTGTCATCCTAAAAGAACTCCTTACCATTCCAAGACTCTCTACATCATGCAAAGTTGT 1277
Query 1347 CGTTCTCTGA 1356
||||||||||
Sbjct 1278 CGTTCTCTGA 1287
Score = 87.9 bits (47), Expect = 2e-16
Identities = 56/60 (93%), Gaps = 2/60 (3%)
Strand=Plus/Plus
Query 953 ATTTC-TCAAGATGTGAACGACTACCCTTATTCCGTAACCTATCTGTCTTGTGTGTTGAG 1011
||||| || | |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 925 ATTTCTTCGA-ATGTGAACGACTACCCTTATTCCGTAACTTATCTGTCTTGTGTGTTGAG 983
> Ahg477036 jgi|Araly1|477036|fgenesh2_kg.2__2166__AT1G78730.1
Length=1235
Score = 171 bits (92), Expect = 2e-41
Identities = 179/220 (81%), Gaps = 9/220 (4%)
Strand=Plus/Plus
Query 61 AGCAAATTACCAGATTGTTTGCTATGTGAGGTACTCTTGAATCTTCCCACAAAAGATGTT 120
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 85 AGCAAATTACCAGATCCATTGCTATGTCAGGTACTCTTGAATCTTCCCACAAAAGATGTG 144
Query 121 GTTAAGACTAGTGTTTTATCCCGTAGATGGAGAAA-TCTCTGGA-AACACGTACCTGGTT 178
|||||||||||||| |||||| |||||||| |||| | |||||| || ||||||||||
Sbjct 145 GTTAAGACTAGTGTGTTATCCAGTAGATGG-GAAAATATCTGGAGAAGT-GTACCTGGTT 202
Query 179 TAGACCTAGACAATACTGATTTCCAAGAGTTCAACACATTCT-TGAGTTTTGTTGATAGC 237
| ||| | | || ||| |||| |||| |||| | || | |||| ||||||||||||
Sbjct 203 TGGACTTGGGGTATGGTGACTTCCCGGAGTACAACGCTTT-TGTGAGCTTTGTTGATAGC 261
Query 238 TTTCTCGATTTCAACAGTGAATCATT-CTTACAAAAATTT 276
||||| | ||| ||| | ||||| || | | ||||| |||
Sbjct 262 TTTCTGGGTTTTAACCGCGAATC-TTGCCTGCAAAA-TTT 299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50741602527
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5