BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G69640.1
Length=1286
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476099 jgi|Araly1|476099|fgenesh2_kg.2__1229__AT1G69640.1 1845 0.0
Ahg921548 jgi|Araly1|921548|scaffold_102829.1 545 2e-154
> Ahg476099 jgi|Araly1|476099|fgenesh2_kg.2__1229__AT1G69640.1
Length=1241
Score = 1845 bits (999), Expect = 0.0
Identities = 1183/1266 (93%), Gaps = 36/1266 (3%)
Strand=Plus/Plus
Query 1 AAAACGCAAGTATCGTCCTTTGTTTTGTTTCTTTCTTCATCGTTGATTTGTC-AACTCAA 59
|||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1 AAAACGCAAGTATCGTTCTTTGTTTTGTTTC-TTCTTCATCGTTGATTTGTCAAACTCAA 59
Query 60 CAACGCCCAAACCCTAAAACAATCCCCAATCATCGTTTCAATAATCAAATTTCCCCAATT 119
| ||| ||||||||| || || ||||||||| ||||| |||||||||||||| |||
Sbjct 60 CGACG-CCAAACCCT--AA-AA----CAATCATCGATTCAACAATCAAATTTCCCCTATT 111
Query 120 GAAGAATAAAGATCAAAACTTTGGAAGTTTTCCTGTGAAAATAATCTATCCTTTTTGCAT 179
|||| ||||| |||||| |||| | ||||||||||||| || ||||| ||||||||||||
Sbjct 112 GAAGGATAAAAATCAAACCTTTAGCAGTTTTCCTGTGATAA-AATCTTTCCTTTTTGCAT 170
Query 180 CATTTGCGTTTTGGTTGATGAAGAGGATCTGAAGAAGCTGAGATTTAGGAATGATGATGG 239
|| ||||| |||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 171 CAATTGCG-TTTGGTTGATGAAGAGGATCTGAAGAAGCTGAGATTTAGG-A--ATGATGG 226
Query 240 GTTTTGCTGTATCGGATGAATTGTTGGGTACTGTTGCTCCGATTGTGGTGTACTGGTTGT 299
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 227 GTTTTGCTGTATCGGATGAATTGTTGGGTACTGTTGCTCCGATTGTGGTGTATTGGTTGT 286
Query 300 ATTCTGGGATTTATGTAGCGCTCTCCTCTTTAGAGAGTTATAGATTGCATTCAAAGGTTG 359
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 287 ATTCTGGGATTTATGTAGCGCTCTCGTCTTTGGAGAGTTATAGATTGCATTCAAAGGTTG 346
Query 360 AAGAAGAAGAGAAGAATCTTGTATCGAAATCTTCTGTTGTGAAAGGTGTTCTTGTTCAAC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 AAGAAGAAGAGAAGAATCTTGTATCGAAATCTTCTGTTGTGAAAGGTGTTCTTGTTCAAC 406
Query 420 AGGTTGTTCAAGCTGTTGTCGCTATCCTTTTGTTCACGGTGACGGGAAGTGATGCCGAAG 479
||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||
Sbjct 407 AGGTTGTTCAAGCTGTTGTCGCTATCCTTTTATTCACGGTGACAGGAAGTGATGTCGAAG 466
Query 480 CAGACAAAGCGCAACAGTTTTCCTTCTTGGTCCTAGCAAGACAGTTTGTGACTGCCATGA 539
||||||||||||||||||||||| | |||||| |||| |||||||||||||| |||||||
Sbjct 467 CAGACAAAGCGCAACAGTTTTCCCTGTTGGTCTTAGCCAGACAGTTTGTGACGGCCATGA 526
Query 540 TAGTCCTCGACACATGGCAATACTTCATGCATCGATATATGCATCAGAACAAGTTCTTAT 599
||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 527 TAGTCCTAGACACATGGCAATACTTTATGCATCGATATATGCATCACAACAAGTTCTTAT 586
Query 600 ACAAACATATCCACTCTCAACACCACCGTCTTATCGTCCCTTATGCATATGGAGCTTTAT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 587 ACAAACATATCCACTCTCAACACCACCGTCTTATCGTCCCTTATGCATATGGAGCGTTAT 646
Query 660 ACAACCATCCAGTGGAAGGTCTTCTCTTGGATACAATTGGAGGCGCCTTATCTTTCCTAG 719
||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 647 ACAACCACCCAGTTGAAGGTCTTCTCTTGGATACAGTTGGAGGCGCCTTATCTTTCCTAG 706
Query 720 TCTCTGGTATGTCTCCAAGAACTTCCATCTTCTTCTTCTCTTTCGCCACGATCAAAACCG 779
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 707 TCTCTGGTATGTCTCCAAGAACTTCCATCTTCTTCTTCTCTTTCGCCACAATCAAGACTG 766
Query 780 TGGACGACCATTGCGGTCTCTGGCTACCTGGAAACTTATTCCATATGGTCTTCAAGAACA 839
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 767 TGGACGACCATTGCGGTCTCTGGCTTCCTGGAAACTTATTCCATATGGTCTTCAAGAACA 826
Query 840 ACTCGGCTTACCACGATATCCATCATCAGCTCTATGGAACCAAATACAATTTCTCTCAGC 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 ACTCGGCTTACCACGATATCCATCATCAGCTCTATGGAACCAAATACAATTTCTCTCAGC 886
Query 900 CTTTCTTTGTCATGTGGGATCGGATTCTTGGAACTTACATGCCTTACTCGCTTGAGAAAA 959
|||||||||| ||||||||||||||||| ||||||||||||||||| || || |||||||
Sbjct 887 CTTTCTTTGTTATGTGGGATCGGATTCTGGGAACTTACATGCCTTATTCCCTCGAGAAAA 946
Query 960 GAGAAGATGGAGGATTCGAAGCTCGCCCGACTAAAGAATTCAAAGACGATTAA-GATTTT 1018
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 947 GAGAAGATGGAGGATTCGAAGCACGCCCGACTAAAGAATTCAAAGACGATTAAAGATTTT 1006
Query 1019 GGAGTTTGGATATATGTTATGTATCTGCCCTGA-----G-G-TTGGAGAAATGGATGATA 1071
|||||||||||||||||||||||||||||||| | | ||||| || |||||||||
Sbjct 1007 GGAGTTTGGATATATGTTATGTATCTGCCCTGGCCCCTGTGGTTGGATAA-TGGATGATA 1065
Query 1072 CTTTGTGTTATTGGAGGTGTAGTTTTAAAATCAGAAACAGAACTGGtttttttGCGTTTT 1131
||||||||||||||||||||||||||||| ||||||||||||||||||| | | ||||
Sbjct 1066 CTTTGTGTTATTGGAGGTGTAGTTTTAAA-TCAGAAACAGAACTGGTTTGT--G--TTTT 1120
Query 1132 GCGTTTCTTCTCAAGAGCGAATTTAGCTTGGAGTTTGAGATTTGTATATAAACATTATTG 1191
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1121 GCGTTTCTTCTCAAGAGCGAAT----CT-GGAGTTTGAGATTTGTATATAAACATTATTG 1175
Query 1192 AGTTGTTGTTCTACTTTCGGTTTTT--GTTTTGCATGTAATATTACTACAACAAACATGt 1249
||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||| |||
Sbjct 1176 AGTTGTTGTTCTACTTTCGGTTTTTTTGTTTTGCATGTAACATTACCACAACAAACTTGT 1235
Query 1250 tttttt 1255
||||||
Sbjct 1236 TTTTTT 1241
> Ahg921548 jgi|Araly1|921548|scaffold_102829.1
Length=847
Score = 545 bits (295), Expect = 2e-154
Identities = 479/566 (85%), Gaps = 20/566 (4%)
Strand=Plus/Plus
Query 457 GGTGACGGGAAGTGATGCCGAAG--CAGACAAAGCGCAACAGTTTTCCTTCTTGGTCCTA 514
|||||| ||||||||||||| || ||| | | | || || | |||| | ||||| |||
Sbjct 275 GGTGACAGGAAGTGATGCCG-AGTCCAG-C--A-CACAGCAATCTTCCATATTGGTTCTA 329
Query 515 GCAAGACAGTTTGTGACTGCCATGATAGTCCTCGACACATGGCAATACTTCATGCATCGA 574
|| | |||| ||| | ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 330 GCTGGTCAGTGTGTAATTGCCATGTTAGTCCTCGACACATGGCAATACTTCATGCATCGG 389
Query 575 TATATGCATCAGAACAAGTTCTTATACAAACATATCCACTCTCAACACCACCGTCTTATC 634
||||||||||| |||||||||||||||||||||||||||||||| ||||| | ||| |
Sbjct 390 TATATGCATCACAACAAGTTCTTATACAAACATATCCACTCTCAGCACCATAGGCTTGTT 449
Query 635 GT-CCCTTATGCATATGGAGCTTTATACAACCATCCAGTGGAAGGTCTTCTCTTGGATAC 693
|| |||| |||| ||||||||| |||||||||||||| | ||||| |||||| | |||||
Sbjct 450 GTTCCCT-ATGCTTATGGAGCTCTATACAACCATCCAATAGAAGGCCTTCTCCTCGATAC 508
Query 694 AATTGGAGGCGCCTTATCTTTCCT-AGTCTCTGGTATGTCTCCAAGAACTTCCATCTTCT 752
|||||| |||||||||||||| || | |||| |||||||||||||||||||| |||||||
Sbjct 509 AATTGGTGGCGCCTTATCTTTTCTCA-TCTCGGGTATGTCTCCAAGAACTTCAATCTTCT 567
Query 753 TCTTCTC-TTTCGCCACGATCAAAACCGTGGACGACCATTGCGGTCTCTGGCTACCTGGA 811
||||||| ||| || || |||||||||||||| ||||||||||| ||||| || || |||
Sbjct 568 TCTTCTCCTTT-GCAACCATCAAAACCGTGGATGACCATTGCGGACTCTGCCTCCCCGGA 626
Query 812 AA-CTTATTCCATATGGTCTTCAAGAACAACTCGGCTTACCACGATATCCATCATCAGCT 870
|| || |||||||| | || ||||||||| | || || || ||| | || ||||||||
Sbjct 627 AATCTC-TTCCATATCTTGTTTAAGAACAACACCGCGTATCATGATGTGCACCATCAGCT 685
Query 871 CTATGGAACCAAATACAATTTCTCTCAGCCTTTCTTTGTCATGTGGGATCGGATTCTTGG 930
||||||| ||||| ||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 686 TTATGGAAACAAATTCAACTTCTCTCAGCCTTTCTTCGTCATGTGGGATCGGATTCTTGG 745
Query 931 AACTTACATGCCTTACTCGCTTGAGAAAAGAGAA-GATGGAGGATTCGAAGCTCGCCCGA 989
||||||||||||||||||||||||||| | ||| ||||| ||||| |||||||| || |
Sbjct 746 TACTTACATGCCTTACTCGCTTGAGAAACG-GAAAGATGGCGGATTTGAAGCTCGTCCAA 804
Query 990 CTAAAGAA-TTCAAAGAC-GATTAAG 1013
| ||| || || |||||| |||||||
Sbjct 805 CGAAACAAGTT-AAAGACTGATTAAG 829
Score = 213 bits (115), Expect = 3e-54
Identities = 190/226 (84%), Gaps = 6/226 (3%)
Strand=Plus/Plus
Query 235 GATGGGTTTTGCTGTATCGGATGAATTGTTGGGTA-CTGTTGCTCCGATTGTGGTGTACT 293
||||||||||| | | || || ||||||||||| | || ||||||||||| ||||||| |
Sbjct 23 GATGGGTTTTGTTCTGTCTGACGAATTGTTGGG-AGCTTTTGCTCCGATTCTGGTGTATT 81
Query 294 -GGTTGTATTCTGGGATTTATGTAGCG-CTCTCCTCTTTAGAGAGTTATAGATTGCATTC 351
|||| ||||||||| ||||||| | | ||||| || || ||||||||||||||||||||
Sbjct 82 GGGTT-TATTCTGGGGTTTATGT-GGGACTCTCTTCGTTGGAGAGTTATAGATTGCATTC 139
Query 352 AAAGGTTGAAGAAGAAGAGAAGAATCTTGTATCGAAATCTTCTGTTGTGAAAGGTGTTCT 411
||||||||| |||||||||||||||||||| || || || |||||| |||||||||||
Sbjct 140 AAAGGTTGAGGAAGAAGAGAAGAATCTTGTCTCCAAGTCAAATGTTGTTAAAGGTGTTCT 199
Query 412 TGTTCAACAGGTTGTTCAAGCTGTTGTCGCTATCCTTTTGTTCACG 457
| | |||||| || |||| || | |||||||||||| ||||||||
Sbjct 200 TCTCCAACAGCTTATTCAGGCCATCGTCGCTATCCTTCTGTTCACG 245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48072998337
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5